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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)



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segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd adrenocortical dysplasia acts_upstream_of_or_within IMP (MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:3526782 NCBI chr 8:106,424,787...106,427,860
Ensembl chr 8:106,422,492...106,427,734
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in IGI (MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:82989 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IMP (MGI:1931803|PMID:11262239)
(MGI:3587130|PMID:16079160)
MGI PMID:11262239 PMID:16079160 MGI:1931803 MGI:3587130 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:3580203 NCBI chr10:116,905,330...116,984,442
Ensembl chr10:116,905,332...116,984,439
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:64,769,717...64,776,909
Ensembl chr 1:64,769,717...64,776,910
JBrowse link
G Tasor transcription activation suppressor involved_in IMP (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chr14:27,150,759...27,205,512
Ensembl chr14:27,150,791...27,205,512
JBrowse link
G Tbx3 T-box 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789
JBrowse link
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) acts_upstream_of_or_within IMP (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chr 6:72,603,354...72,766,028
Ensembl chr 6:72,603,361...72,766,237
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within IMP (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chr 9:110,768,676...110,775,226
Ensembl chr 9:110,768,671...110,775,226
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in IDA (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IGI (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr11:59,138,862...59,181,577
Ensembl chr11:59,138,859...59,181,578
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IMP (MGI:3710018|PMID:17442697) UniProt PMID:17442697 MGI:3710018 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within IMP (MGI:64171|PMID:7903221) MGI PMID:7903221 MGI:64171 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chr 6:52,139,397...52,141,811
Ensembl chr 6:52,139,397...52,141,811
JBrowse link
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) acts_upstream_of_or_within IMP (MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:67780 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 zinc finger protein of the cerebellum 2 involved_in IGI (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chr14:122,712,796...122,717,740
Ensembl chr14:122,712,847...122,717,264
JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 involved_in IGI (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IMP (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IMP (MGI:5317364|PMID:21795391) MGI PMID:21795391 MGI:5317364 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in IMP (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chr11:59,674,719...59,678,483
Ensembl chr11:59,674,723...59,678,471
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:56,814,603...56,858,444
Ensembl chr19:56,814,641...56,858,444
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IMP
IBA
(MGI:4946318|PMID:21383078)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21383078 PMID:21873635 MGI:4946318 MGI:6201960 NCBI chr 1:156,082,866...156,131,874
Ensembl chr 1:156,082,866...156,131,234
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:43,926,225...43,942,737
Ensembl chr17:43,926,226...43,941,190
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:45,965,335...46,034,766
Ensembl chr 4:45,965,334...46,034,761
JBrowse link
G Tdrkh tudor and KH domain containing protein involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:94,320,551...94,342,161
Ensembl chr 3:94,320,580...94,341,975
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:100,982,188...101,129,031
Ensembl chr 9:100,982,283...101,128,994
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in IMP (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr18:61,151,934...61,169,271
Ensembl chr18:61,151,934...61,169,271
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in IMP (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within IMP
IGI
(MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr19:25,649,758...25,656,355
Ensembl chr19:25,649,775...25,656,355
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:4367298|PMID:19779553) MGI PMID:19779553 GO_REF:0000096 MGI:4367298 MGI:4834177 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300
JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:72973 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within IMP
IGI
(MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP
IGI
(MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:3578715 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within IMP (MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:2389015 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chr 6:52,139,397...52,141,811
Ensembl chr 6:52,139,397...52,141,811
JBrowse link
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) acts_upstream_of_or_within IMP (MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:2660991 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 acts_upstream_of_or_within IMP (MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:2387913 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IMP (MGI:1928575|PMID:11124811) MGI PMID:11124811 MGI:1928575 NCBI chr12:11,258,383...11,258,949
Ensembl chr12:11,258,361...11,258,973
JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in IMP (MGI:4946172|PMID:21059868) UniProt PMID:21059868 MGI:4946172 NCBI chr 5:108,213,518...108,257,085
Ensembl chr 5:108,213,540...108,256,870
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,472,762...119,576,826
Ensembl chr 1:119,472,767...119,576,730
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within IMP (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chr 6:122,582,362...122,587,046
Ensembl chr 6:122,582,362...122,587,046
JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A acts_upstream_of_or_within IMP (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chr  X:18,027,101...18,146,175
Ensembl chr  X:18,028,814...18,146,175
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361
JBrowse link
G Mesp1 mesoderm posterior 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Mesp2 mesoderm posterior 2 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4459001|PMID:20346937)
GO_Central
MGI
PMID:20346937 PMID:21873635 MGI:4459001 MGI:6201960 NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187
JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IMP (MGI:5438472|PMID:21998026) MGI PMID:21998026 MGI:5438472 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within IGI (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr  X:138,680,430...138,683,102
Ensembl chr  X:138,680,298...138,683,102
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
IGI
IDA
(MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chr 9:86,897,590...86,902,494
Ensembl chr 9:86,897,590...86,901,970
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:1195384 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851
JBrowse link
G Tbx6 T-box 6 acts_upstream_of_or_within IDA (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr 5:124,677,969...124,688,569
Ensembl chr 5:124,678,758...124,688,569
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat acts_upstream_of_or_within IEP (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr11:12,186,676...12,415,022
Ensembl chr11:12,186,608...12,414,960
JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within IMP (MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:3034157 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within IGI (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr11:101,768,336...101,785,309
Ensembl chr11:101,768,336...101,785,200
JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within IGI (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chr12:37,158,539...37,229,533
Ensembl chr12:37,158,539...37,229,533
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within IMP (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr 2:22,830,085...22,930,275
Ensembl chr 2:22,830,085...22,930,253
JBrowse link
G Atm ataxia telangiectasia mutated acts_upstream_of_or_within IGI (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040
JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within IDA (MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:3037351 NCBI chr11:108,808,654...108,841,609
Ensembl chr11:108,811,175...108,841,609
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298
JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134
JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within IMP
IDA
(MGI:3620337|PMID:15170697)
(MGI:1095777|PMID:9272948)
MGI PMID:9272948 PMID:15170697 MGI:1095777 MGI:3620337 NCBI chr 7:27,992,980...28,001,210
Ensembl chr 7:27,992,978...28,001,663
JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within IGI (MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:3583034 NCBI chr15:81,470,329...81,536,278
Ensembl chr15:81,469,552...81,536,278
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,472,762...119,576,826
Ensembl chr 1:119,472,767...119,576,730
JBrowse link
G Foxb1 forkhead box B1 involved_in IMP (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chr 9:69,664,992...69,668,222
Ensembl chr 9:69,664,992...69,668,222
JBrowse link
G Foxc1 forkhead box C1 involved_in IGI (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 involved_in IGI (MGI:2150572|PMID:11562355) UniProt PMID:11562355 MGI:2150572 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chr 8:121,811,125...121,814,893
Ensembl chr 8:121,811,125...121,814,883
JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within IMP (MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
MGI PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chr11:69,009,783...69,014,880
Ensembl chr11:69,011,230...69,014,881
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within IMP (MGI:3578569|PMID:15857914) MGI PMID:15857914 MGI:3578569 NCBI chr 7:140,547,342...140,549,740
Ensembl chr 7:140,547,134...140,549,738
JBrowse link
G Kat2a K(lysine) acetyltransferase 2A acts_upstream_of_or_within IGI
IMP
(MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chr11:100,595,572...100,604,427
Ensembl chr11:100,595,572...100,603,291
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI
IMP
(MGI:1334099|PMID:10090727)
(MGI:3510574|PMID:15545629)
MGI PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chr 3:130,903,946...131,018,006
Ensembl chr 3:130,904,120...131,018,005
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
IMP (MGI:5545944|PMID:23072809)
(MGI:3774705|PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 MGI:3774705 MGI:5545944 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Mesp2 mesoderm posterior 2 acts_upstream_of_or_within IGI
IMP
(MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within IMP (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chr18:10,725,523...10,822,969
Ensembl chr18:10,725,548...10,818,704
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IMP (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chr12:11,258,383...11,258,949
Ensembl chr12:11,258,361...11,258,973
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (MGI:78390|PMID:8565825)
(MGI:1861090|PMID:10929709)
(MGI:3849775|PMID:19531352)
MGI PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995
JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within IMP (MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:76810 NCBI chr10:107,328,709...107,330,584
Ensembl chr10:107,328,714...107,330,598
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724
JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within IEP (PMID:9621431) BHF-UCL PMID:9621431 NCBI chr14:69,428,141...69,432,107
Ensembl chr14:69,428,087...69,432,111
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within IMP (MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:5608942 NCBI chr11:82,791,594...82,799,272
Ensembl chr11:82,791,594...82,799,237
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within IMP (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chr 7:121,706,485...121,732,203
Ensembl chr 7:121,706,485...121,732,208
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within IMP (MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:2451199 NCBI chr14:80,004,212...80,008,752
Ensembl chr14:80,004,215...80,008,752
JBrowse link
G Plxna2 plexin A2 acts_upstream_of_or_within IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 1:194,302,020...194,499,177
Ensembl chr 1:194,300,526...194,499,177
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within IMP (MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:2660984 NCBI chr 2:153,083,452...153,112,949
Ensembl chr 2:153,083,453...153,112,167
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within IMP (MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:1267118 NCBI chr16:38,345,420...38,370,619
Ensembl chr16:38,345,499...38,370,620
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IGI (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IGI
IMP
(MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
MGI PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within IGI (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
TAS
IMP
(MGI:3056004|PMID:15466160)
(MGI:4367298|PMID:19779553)
BHF-UCL
MGI
PMID:15466160 PMID:19779553 MGI:3056004 MGI:4367298 NCBI chr 5:53,713,121...53,814,787
Ensembl chr 5:53,623,494...53,814,704
JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within
IDA
IMP
(MGI:3613215|PMID:16326386)
(MGI:3715395|PMID:17531978)
UniProt
MGI
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chr 9:86,897,590...86,902,494
Ensembl chr 9:86,897,590...86,901,970
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within IMP (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C acts_upstream_of_or_within IEP (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 5:17,779,814...17,935,266
Ensembl chr 5:17,779,279...17,935,266
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI
IEP
(MGI:3618960|PMID:16467359)
(PMID:10654605)
MGI
BHF-UCL
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276
JBrowse link
G T brachyury, T-box transcription factor T acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:3701028|PMID:16835439)
(MGI:6201960|PMID:21873635)
(MGI:3056222|PMID:15384171)
(MGI:64493|PMID:8293872)
MGI
GO_Central
PMID:8293872 PMID:15384171 PMID:16835439 PMID:21873635 MGI:3056222 MGI:3701028 MGI:6201960 MGI:64493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in IMP (MGI:5918349|PMID:28893950) MGI PMID:28893950 MGI:5918349 NCBI chr 7:105,392,101...105,393,586
Ensembl chr 7:105,388,600...105,393,568
JBrowse link
G Tbx18 T-box18 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3044041|PMID:15155583)
GO_Central
MGI
PMID:15155583 PMID:21873635 MGI:3044041 MGI:6201960 NCBI chr 9:87,584,853...87,613,313
Ensembl chr 9:87,584,853...87,613,313
JBrowse link
G Tcap titin-cap acts_upstream_of_or_within IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr11:98,274,637...98,275,779
Ensembl chr11:98,274,637...98,275,779
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within IMP (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IMP (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chr 5:124,677,969...124,688,569
Ensembl chr 5:124,678,758...124,688,569
JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:3709913 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
G Ttn titin acts_upstream_of_or_within IEP (PMID:9817758) BHF-UCL PMID:9817758 NCBI chr 2:76,534,324...76,812,901
Ensembl chr 2:76,534,324...76,812,891
JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IMP (MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chr11:59,138,862...59,181,577
Ensembl chr11:59,138,859...59,181,578
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405
JBrowse link
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 acts_upstream_of_or_within IMP (MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:3708426 NCBI chr 5:25,894,812...25,910,795
Ensembl chr 5:25,894,810...25,910,823
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IMP (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chr 2:44,873,524...45,007,454
Ensembl chr 2:44,873,644...45,007,407
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within IEP (PMID:15821257) UniProt PMID:15821257 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828
JBrowse link
G Irx1 Iroquois homeobox 1 acts_upstream_of_or_within IEP (PMID:17875669) UniProt PMID:17875669 NCBI chr13:72,106,351...72,111,842
Ensembl chr13:72,106,040...72,111,842
JBrowse link
G Irx2 Iroquois homeobox 2 acts_upstream_of_or_within IEP (PMID:17875669) UniProt PMID:17875669 NCBI chr13:72,771,463...72,782,315
Ensembl chr13:72,776,939...72,782,317
JBrowse link
G Irx3 Iroquois related homeobox 3 acts_upstream_of_or_within IEP (PMID:17875669) UniProt PMID:17875669 NCBI chr 8:92,525,139...92,528,282
Ensembl chr 8:92,525,153...92,528,695
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:56,398,291...56,399,993
Ensembl chr13:56,398,291...56,399,976
JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:56,318,917...56,326,816
Ensembl chr13:56,321,517...56,326,698
JBrowse link
G Wt1 WT1 transcription factor involved_in IMP (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin, alpha 5 acts_upstream_of_or_within IMP (MGI:3611396|PMID:16316641) MGI PMID:16316641 MGI:3611396 NCBI chr 2:179,818,166...179,868,092
Ensembl chr 2:179,818,166...179,867,652
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within IMP (MGI:3613099|PMID:16319111) MGI PMID:16319111 MGI:3613099 NCBI chr 1:62,742,476...62,857,851
Ensembl chr 1:62,742,444...62,857,854
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F acts_upstream_of_or_within IMP (MGI:3613099|PMID:16319111) MGI PMID:16319111 MGI:3613099 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link
G Shh sonic hedgehog acts_upstream_of IDA (MGI:3053236|PMID:15337776) MGI PMID:15337776 MGI:3053236 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Nrp2 neuropilin 2 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 1:62,742,476...62,857,851
Ensembl chr 1:62,742,444...62,857,854
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 9:107,558,698...107,587,674
Ensembl chr 9:107,558,699...107,587,674
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:3055483|PMID:15469977)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:15469977 PMID:21873635 MGI:3055483 MGI:6201960 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,330,856...80,411,526
Ensembl chr 2:80,330,856...80,411,724
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within IGI
IMP
(MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:1858546 NCBI chr 7:65,511,884...65,700,134
Ensembl chr 7:65,511,482...65,700,134
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28739
    multicellular organismal process 9098
      pattern specification process 496
        regionalization 389
          segmentation 114
            appendage segmentation + 0
            blastoderm segmentation + 24
            brain segmentation 3
            central nervous system segmentation + 5
            renal system segmentation + 1
            segment specification + 15
            somitogenesis + 77
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 28739
    developmental process 7279
      anatomical structure development 6701
        multicellular organism development 5647
          pattern specification process 496
            regionalization 389
              segmentation 114
                appendage segmentation + 0
                blastoderm segmentation + 24
                brain segmentation 3
                central nervous system segmentation + 5
                renal system segmentation + 1
                segment specification + 15
                somitogenesis + 77
                trunk segmentation + 6
paths to the root