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ONTOLOGY REPORT - ANNOTATIONS

Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


show annotations for term's descendants           Sort by:
segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15537664) Ensembl
MGI		 PMID:15537664 GO_REF:0000107 NCBI chr16:67,657,512...67,660,260
Ensembl chr16:67,657,512...67,660,810 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,225,342...7,234,517
Ensembl chr17:7,225,342...7,234,517 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11262239)
(PMID:16079160)		 Ensembl
MGI		 PMID:11262239 PMID:16079160 GO_REF:0000107 NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:9790191) UniProt
MGI		 PMID:9790191 GO_REF:0000024 NCBI chr 3:46,574,535...46,582,457
Ensembl chr 3:46,574,534...46,582,457 		JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chr12:69,470,388...69,579,793
Ensembl chr12:69,470,349...69,579,793 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IDA (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr 2:207,762,598...207,769,906
Ensembl chr 2:207,762,598...207,769,906 		JBrowse link
G HOXD8 homeobox D8 involved_in NAS (PMID:2568311) UniProt PMID:2568311 NCBI chr 2:176,129,705...176,132,695
Ensembl chr 2:176,129,694...176,132,695 		JBrowse link
G TASOR transcription activation suppressor involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,132...56,683,265 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IMP (PMID:9207801) UniProt PMID:9207801 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175 		JBrowse link
G TBXT T-box transcription factor T involved_in TAS (PMID:8963900) PINC PMID:8963900 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700 		JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chr 2:85,133,392...85,310,387
Ensembl chr 2:85,133,392...85,310,387 		JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20630950) Ensembl
MGI		 PMID:20630950 GO_REF:0000107 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11029008) Ensembl
MGI		 PMID:11029008 GO_REF:0000107 NCBI chr 1:228,006,998...228,061,271
Ensembl chr 1:228,006,998...228,061,271 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903221) Ensembl
MGI		 PMID:7903221 GO_REF:0000107 NCBI chr10:62,811,996...62,819,167
Ensembl chr10:62,811,996...62,819,167 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9367425) Ensembl
MGI		 PMID:9367425 GO_REF:0000107 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7925021) Ensembl
MGI		 PMID:7925021 GO_REF:0000107 NCBI chr20:40,685,848...40,689,236
Ensembl chr20:40,685,848...40,689,236 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZIC2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chr13:99,981,784...99,986,765
Ensembl chr13:99,981,784...99,986,765 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:137,566,127...137,577,691
Ensembl chr  X:137,566,127...137,577,691 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLD6 phospholipase D family member 6 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,200,995...17,206,333
Ensembl chr17:17,200,995...17,206,333 		JBrowse link
G TDRD1 tudor domain containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:114,174,874...114,232,666
Ensembl chr10:114,179,270...114,232,666 		JBrowse link
G TDRD5 tudor domain containing 5 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:179,591,613...179,691,272
Ensembl chr 1:179,591,613...179,691,272 		JBrowse link
G TDRD6 tudor domain containing 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:46,680,268...46,704,319
Ensembl chr 6:46,687,875...46,704,319 		JBrowse link
G TDRD7 tudor domain containing 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:97,412,096...97,496,125
Ensembl chr 9:97,412,096...97,496,125 		JBrowse link
G TDRKH tudor and KH domain containing involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:151,766,486...151,790,534
Ensembl chr 1:151,770,107...151,791,416 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKD1 NKD inhibitor of WNT signaling pathway 1 involved_in ISS (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr16:50,548,396...50,649,249
Ensembl chr16:50,548,396...50,649,249 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,728...136,147,894
Ensembl chr 3:135,965,728...136,147,894 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDX1 caudal type homeobox 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:150,166,778...150,184,558
Ensembl chr 5:150,166,778...150,184,558 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:27,960,918...27,969,315
Ensembl chr13:27,960,918...27,969,315 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:170,282,206...170,291,078
Ensembl chr 6:170,282,206...170,306,565 		JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17974128) Ensembl
MGI		 PMID:17974128 GO_REF:0000107 NCBI chr 9:1,050,357...1,057,552
Ensembl chr 9:1,049,858...1,057,552 		JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO
IMP		 (PMID:19779553)
(PMID:19061953)		 Ensembl
MGI
UniProt		 PMID:19061953 PMID:19779553 GO_REF:0000107 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7789282) Ensembl
MGI		 PMID:7789282 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,887...222,298,998 		JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in TAS (PMID:7715727) PINC PMID:7715727 NCBI chr10:22,321,099...22,331,706
Ensembl chr10:22,321,099...22,331,484 		JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough involved_in TAS (PMID:7715727) PINC PMID:7715727 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:12421720) Ensembl
MGI
BHF-UCL		 PMID:12421720 GO_REF:0000024 GO_REF:0000107 NCBI chr17:7,225,342...7,234,517
Ensembl chr17:7,225,342...7,234,517 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9367425) Ensembl
MGI		 PMID:9367425 GO_REF:0000107 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12701106) Ensembl
MGI		 PMID:12701106 GO_REF:0000107 NCBI chr20:40,685,848...40,689,236
Ensembl chr20:40,685,848...40,689,236 		JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12242306) Ensembl
MGI		 PMID:12242306 GO_REF:0000107 NCBI chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499 		JBrowse link
G MSGN1 mesogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124811) Ensembl
MGI		 PMID:11124811 GO_REF:0000107 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798 		JBrowse link
G MTF2 metal response element binding transcription factor 2 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:93,079,283...93,139,076
Ensembl chr 1:93,079,235...93,139,079 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr 2:120,013,077...120,179,119
Ensembl chr 2:120,013,077...120,179,119 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,580,998...22,585,455 		JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368929) Ensembl
MGI		 PMID:16368929 GO_REF:0000107 NCBI chr12:7,689,784...7,695,775
Ensembl chr12:7,689,784...7,695,775 		JBrowse link
G KDM6A lysine demethylase 6A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949634) Ensembl
MGI		 PMID:22949634 GO_REF:0000107 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11291865) Ensembl
MGI		 PMID:11291865 GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:89,732,446...89,751,249
Ensembl chr15:89,749,875...89,751,249 		JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:20346937) GO_Central
MGI		 PMID:20346937 GO_REF:0000033 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754 		JBrowse link
G NRARP NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21998026) Ensembl
MGI		 PMID:21998026 GO_REF:0000107 NCBI chr 9:137,299,631...137,302,271
Ensembl chr 9:137,299,631...137,302,271 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chr14:56,799,905...56,810,479
Ensembl chr14:56,799,905...56,816,693 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:20346937) UniProt
MGI		 PMID:20346937 GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:20346937) Ensembl
MGI
UniProt		 PMID:20346937 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:83,853,229...83,857,515
Ensembl chr 6:83,853,360...83,857,515 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9420335) Ensembl
MGI		 PMID:9420335 GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,528...51,085,045 		JBrowse link
G TBX6 T-box transcription factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20346937) Ensembl
MGI		 PMID:20346937 GO_REF:0000107 NCBI chr16:30,085,793...30,091,924
Ensembl chr16:30,085,793...30,091,924 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20178780) Ensembl
MGI		 PMID:20178780 GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COBL cordon-bleu WH2 repeat protein involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14960495) Ensembl
MGI		 PMID:14960495 GO_REF:0000107 NCBI chr 6:170,282,206...170,291,078
Ensembl chr 6:170,282,206...170,306,565 		JBrowse link
G MEOX1 mesenchyme homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12925591) Ensembl
MGI		 PMID:12925591 GO_REF:0000107 NCBI chr17:43,640,389...43,661,922
Ensembl chr17:43,640,389...43,661,922 		JBrowse link
G MEOX2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12925591) Ensembl
MGI		 PMID:12925591 GO_REF:0000107 NCBI chr 7:15,611,212...15,686,683
Ensembl chr 7:15,611,212...15,686,683 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:106,900,063...106,903,341
Ensembl chr  X:106,900,063...106,903,341 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI1 abl interactor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chr10:26,746,596...26,860,958
Ensembl chr10:26,746,593...26,861,087 		JBrowse link
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16687486) Ensembl
MGI		 PMID:16687486 GO_REF:0000107 NCBI chr11:108,223,067...108,369,102
Ensembl chr11:108,222,804...108,369,102 		JBrowse link
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12636920) Ensembl
MGI		 PMID:12636920 GO_REF:0000107 NCBI chr17:65,528,563...65,561,648
Ensembl chr17:65,528,563...65,561,648 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr10:86,755,763...86,932,844
Ensembl chr10:86,755,786...86,932,825 		JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA		 CAFA
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:15902259) UniProt
MGI
Ensembl		 PMID:15902259 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:170,282,206...170,291,078
Ensembl chr 6:170,282,206...170,306,565 		JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15170697)
(PMID:9272948)		 Ensembl
MGI		 PMID:9272948 PMID:15170697 GO_REF:0000107 NCBI chr19:39,498,947...39,508,469
Ensembl chr19:39,498,895...39,508,481 		JBrowse link
G EP300 E1A binding protein p300 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937931) Ensembl
MGI		 PMID:15937931 GO_REF:0000107 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794329) Ensembl
MGI		 PMID:18794329 GO_REF:0000107 NCBI chr 2:120,013,077...120,179,119
Ensembl chr 2:120,013,077...120,179,119 		JBrowse link
G FOXB1 forkhead box B1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:60,004,311...60,007,444
Ensembl chr15:60,004,234...60,061,730 		JBrowse link
G FOXC1 forkhead box C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124112) Ensembl
MGI		 PMID:11124112 GO_REF:0000107 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422 		JBrowse link
G HES7 hes family bHLH transcription factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15170214)
(PMID:11641270), (PMID:19779553)		 Ensembl
MGI		 PMID:11641270 PMID:15170214 PMID:19779553 GO_REF:0000107 NCBI chr17:8,120,592...8,126,634
Ensembl chr17:8,120,592...8,124,106 		JBrowse link
G IFITM1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) MGI PMID:15857914 NCBI chr11:314,040...315,272
Ensembl chr11:310,041...315,272 		JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937931)
(PMID:17325035)		 Ensembl
MGI		 PMID:15937931 PMID:17325035 GO_REF:0000107 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15545629)
(PMID:10090727)		 Ensembl
MGI		 PMID:10090727 PMID:15545629 GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956 		JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:18234727) Ensembl
MGI
UniProt		 PMID:18234727 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:2,512,529...2,529,177
Ensembl chr 7:2,512,529...2,529,177 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20589884) Ensembl
MGI		 PMID:20589884 GO_REF:0000107 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103 		JBrowse link
G MESP2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15902259) MGI PMID:15902259 NCBI chr15:89,776,332...89,778,754
Ensembl chr15:89,760,591...89,778,754 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16000382) Ensembl
MGI		 PMID:16000382 GO_REF:0000107 NCBI chr18:21,704,916...21,870,953
Ensembl chr18:21,704,957...21,870,953 		JBrowse link
G MSGN1 mesogenin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124811), (PMID:21750544) Ensembl
MGI		 PMID:11124811 PMID:21750544 GO_REF:0000107 NCBI chr 2:17,816,460...17,817,798
Ensembl chr 2:17,816,460...17,817,798 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825)
(PMID:19531352)
(PMID:10929709)		 Ensembl
MGI		 PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671 		JBrowse link
G MYF6 myogenic factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7588068) Ensembl
MGI		 PMID:7588068 GO_REF:0000107 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474 		JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858 		JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:23,678,693...23,682,938
Ensembl chr 8:23,678,697...23,682,938 		JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24875805) Ensembl
MGI		 PMID:24875805 GO_REF:0000107 NCBI chr17:35,128,730...35,142,303
Ensembl chr17:35,128,730...35,142,304 		JBrowse link
G PALB2 partner and localizer of BRCA2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20484223) Ensembl
MGI		 PMID:20484223 GO_REF:0000107 NCBI chr16:23,603,165...23,641,310
Ensembl chr16:23,603,160...23,641,321 		JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16093716) Ensembl
MGI		 PMID:16093716 GO_REF:0000107 NCBI chr20:21,705,664...21,718,481
Ensembl chr20:21,705,659...21,718,481 		JBrowse link
G PCDH8 protocadherin 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12591245) Ensembl
MGI		 PMID:12591245 GO_REF:0000107 NCBI chr13:52,842,889...52,848,640
Ensembl chr13:52,842,889...52,848,641 		JBrowse link
G PLXNA2 plexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:208,022,242...208,244,384
Ensembl chr 1:208,022,242...208,244,384 		JBrowse link
G POFUT1 protein O-fucosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12697902) Ensembl
MGI		 PMID:12697902 GO_REF:0000107 NCBI chr20:32,207,880...32,238,658
Ensembl chr20:32,207,855...32,238,658 		JBrowse link
G POGLUT1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9636176) Ensembl
MGI		 PMID:9636176 GO_REF:0000107 NCBI chr 3:119,468,963...119,494,708
Ensembl chr 3:119,468,963...119,494,708 		JBrowse link
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in IGI (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:135,965,728...136,147,894
Ensembl chr 3:135,965,728...136,147,894 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16687486) Ensembl
MGI		 PMID:16687486 GO_REF:0000107 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208), (PMID:19779553)
(PMID:9153393)		 Ensembl
MGI		 PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553) MGI PMID:10557208 PMID:19779553 NCBI chr 1:226,870,616...226,903,668
Ensembl chr 1:226,870,184...226,927,726 		JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19779553) Ensembl
MGI		 PMID:19779553 GO_REF:0000107 NCBI chr 4:26,105,449...26,435,131
Ensembl chr 4:26,163,455...26,435,131 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17531978) Ensembl
MGI
UniProt		 PMID:17531978 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:83,853,229...83,857,515
Ensembl chr 6:83,853,360...83,857,515 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 9:91,722,601...91,950,228
Ensembl chr 9:91,563,091...91,950,228 		JBrowse link
G SEMA3C semaphorin 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467359) Ensembl
MGI		 PMID:16467359 GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467359) Ensembl
MGI		 PMID:16467359 GO_REF:0000107 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,606,294...6,612,216
Ensembl chr11:6,606,294...6,612,539 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in		 ISS
IBA		 ARUK-UCL
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:84,732,496...84,764,598
Ensembl chr 6:84,687,351...84,764,598 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:15384171)
(PMID:8293872)
(PMID:16835439)		 Ensembl
MGI
GO_Central		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700 		JBrowse link
G TCAP titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,665,349...39,666,554
Ensembl chr17:39,665,349...39,666,554 		JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8955271) Ensembl
MGI		 PMID:8955271 GO_REF:0000107 NCBI chr20:604,257...610,309
Ensembl chr20:604,257...610,309 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20178780) Ensembl
MGI		 PMID:20178780 GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17320900) Ensembl
MGI		 PMID:17320900 GO_REF:0000107 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,546 		JBrowse link
G TTN titin involved_in ISO (MGI:1314551|PMID:9817758) BHF-UCL PMID:9817758 MGI:1314551 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16291790), (PMID:8299937)
(PMID:12636920)		 Ensembl
MGI		 PMID:8299937 PMID:12636920 PMID:16291790 GO_REF:0000107 NCBI chr 1:228,006,998...228,061,271
Ensembl chr 1:228,006,998...228,061,271 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19795512) Ensembl
MGI		 PMID:19795512 GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
G XRCC2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17116431) Ensembl
MGI		 PMID:17116431 GO_REF:0000107 NCBI chr 7:152,644,776...152,676,141
Ensembl chr 7:152,644,776...152,676,193 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16157277), (PMID:16598713) MGI PMID:16157277 PMID:16598713 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:2,528,745...2,530,263
Ensembl chr 1:2,528,745...2,530,263 		JBrowse link
G IRX1 iroquois homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,595,832...3,601,403
Ensembl chr 5:3,595,832...3,601,403 		JBrowse link
G IRX2 iroquois homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:2,735,635...2,751,677
Ensembl chr 5:2,745,845...2,751,677 		JBrowse link
G IRX3 iroquois homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:54,283,304...54,286,787
Ensembl chr16:54,283,304...54,286,787 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BASP1 brain abundant membrane attached signal protein 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:17,216,823...17,276,834
Ensembl chr 5:17,065,598...17,276,843 		JBrowse link
G DCANP1 dendritic cell associated nuclear protein 1 involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,214...135,447,348
Ensembl chr 5:135,444,214...135,447,348 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,534,282...135,535,964
Ensembl chr 5:135,534,282...135,535,964 		JBrowse link
G TIFAB TIFA inhibitor involved_in IGI (PMID:23419067) CAFA PMID:23419067 NCBI chr 5:135,444,226...135,452,351
Ensembl chr 5:135,444,226...135,452,351 		JBrowse link
G WT1 WT1 transcription factor involved_in ISS UniProt GO_REF:0000024 NCBI chr11:32,387,775...32,435,539
Ensembl chr11:32,387,775...32,435,564 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA5 laminin subunit alpha 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16316641) Ensembl
MGI		 PMID:16316641 GO_REF:0000107 NCBI chr20:62,309,065...62,367,312
Ensembl chr20:62,307,955...62,367,312 		JBrowse link
G NRP2 neuropilin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319111) Ensembl
MGI		 PMID:16319111 GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133 		JBrowse link
G SEMA3F semaphorin 3F involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319111) Ensembl
MGI		 PMID:16319111 GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15337776) Ensembl
MGI		 PMID:15337776 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 7:83,955,777...84,492,725
Ensembl chr 7:83,955,777...84,492,724 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr10:52,314,281...52,317,657
Ensembl chr10:52,314,281...52,318,042 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977) MGI PMID:15469977 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858 		JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10809672) Ensembl
MGI		 PMID:10809672 GO_REF:0000107 NCBI chr15:101,303,933...101,489,707
Ensembl chr15:101,289,784...101,525,202 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19779
    multicellular organismal process 8476
      pattern specification process 525
        regionalization 475
          segmentation 118
            appendage segmentation + 0
            blastoderm segmentation + 28
            brain segmentation 3
            central nervous system segmentation + 5
            renal system segmentation 0
            segment specification + 18
            somitogenesis + 77
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 19779
    developmental process 7627
      anatomical structure development 7040
        multicellular organism development 5650
          pattern specification process 525
            regionalization 475
              segmentation 118
                appendage segmentation + 0
                blastoderm segmentation + 28
                brain segmentation 3
                central nervous system segmentation + 5
                renal system segmentation 0
                segment specification + 18
                somitogenesis + 77
                trunk segmentation + 6
paths to the root