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ONTOLOGY REPORT - ANNOTATIONS


Term:segmentation
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Accession:GO:0035282 term browser browse the term
Definition:The regionalization process that divides an organism or part of an organism into a series of semi-repetitive parts, or segments, often arranged along a longitudinal axis.
Synonyms:xref: Wikipedia:Segmentation_(biology)


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segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:3526782 NCBI chrNW_004955484:9,022,520...9,025,446
Ensembl chrNW_004955484:9,022,520...9,025,446
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO (MGI:82989|PMID:8887313) BHF-UCL PMID:8887313 MGI:82989 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (MGI:1931803|PMID:11262239)
(MGI:3587130|PMID:16079160)
MGI PMID:11262239 PMID:16079160 MGI:1931803 MGI:3587130 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (MGI:3580203|PMID:15870281) MGI PMID:15870281 MGI:3580203 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chrNW_004955430:6,440,655...6,480,956
Ensembl chrNW_004955430:6,442,084...6,480,802
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chrNW_004955424:2,139,576...2,286,183
Ensembl chrNW_004955424:2,137,865...2,286,181
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO (MGI:1303194|PMID:9790191) MGI PMID:9790191 MGI:1303194 NCBI chrNW_004955420:25,476,975...25,479,969
Ensembl chrNW_004955420:25,477,122...25,479,969
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) BHF-UCL PMID:9054360 MGI:4835157 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839483|PMID:20630950) MGI PMID:20630950 MGI:4839483 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
BMP signaling pathway involved in renal system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (MGI:3710018|PMID:17442697) UniProt PMID:17442697 MGI:3710018 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO (MGI:64171|PMID:7903221) MGI PMID:7903221 MGI:64171 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chrNW_004955410:28,794,878...28,798,231
Ensembl chrNW_004955410:28,794,878...28,798,231
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (MGI:67780|PMID:7925021) MGI PMID:7925021 MGI:67780 NCBI chrNW_004955445:16,219,675...16,222,913 JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 Zic family member 2 involved_in ISO (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chrNW_004955404:10,731,987...10,735,599 JBrowse link
G Zic3 Zic family member 3 involved_in ISO (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chrNW_004955489:7,560,684...7,571,739
Ensembl chrNW_004955489:7,560,684...7,571,892
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (MGI:5545944|PMID:23072809) UniProt PMID:23072809 MGI:5545944 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 involved_in ISO (MGI:4943609|PMID:21397848) UniProt PMID:21397848 MGI:4943609 NCBI chrNW_004955577:698,741...702,977 JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISO (MGI:4946318|PMID:21383078) UniProt PMID:21383078 MGI:4946318 NCBI chrNW_004955406:18,895,010...18,961,200
Ensembl chrNW_004955406:18,895,011...18,962,333
JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004955501:2,648,017...2,751,999
Ensembl chrNW_004955501:2,648,017...2,752,057
JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004955415:4,337,903...4,355,782
Ensembl chrNW_004955415:4,337,903...4,355,782
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5689216|PMID:26114479) UniProt PMID:26114479 MGI:5689216 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chrNW_004955434:5,528,625...5,535,783 JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:19061953)
(MGI:4367298|PMID:19779553)
UniProt
MGI
PMID:19061953 PMID:19779553 MGI:4367298 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:72973|PMID:7789282) MGI PMID:7789282 MGI:72973 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (MGI:3820487|PMID:17974128) MGI PMID:17974128 MGI:3820487 NCBI chrNW_004955453:11,463,407...11,558,001
Ensembl chrNW_004955453:11,463,379...11,558,006
JBrowse link
retinoic acid receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3578715|PMID:15889094) MGI PMID:15889094 MGI:3578715 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (MGI:2389015|PMID:12421720) MGI PMID:12421720 MGI:2389015 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (MGI:1098901|PMID:9367425) MGI PMID:9367425 MGI:1098901 NCBI chrNW_004955410:28,794,878...28,798,231
Ensembl chrNW_004955410:28,794,878...28,798,231
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (MGI:2660991|PMID:12701106) MGI PMID:12701106 MGI:2660991 NCBI chrNW_004955445:16,219,675...16,222,913 JBrowse link
G Mllt3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (MGI:2387913|PMID:12242306) MGI PMID:12242306 MGI:2387913 NCBI chrNW_004955434:22,594,681...22,873,826 JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO (MGI:1928575|PMID:11124811) MGI PMID:11124811 MGI:1928575 NCBI chrNW_004955469:617,029...617,610
Ensembl chrNW_004955469:617,029...617,610
JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (MGI:4946172|PMID:21059868) UniProt PMID:21059868 MGI:4946172 NCBI chrNW_004955423:1,469,498...1,534,082
Ensembl chrNW_004955423:1,469,498...1,534,082
JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3611720|PMID:16368929) MGI PMID:16368929 MGI:3611720 NCBI chrNW_004955413:6,493,734...6,516,315 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (MGI:5448135|PMID:22949634) MGI PMID:22949634 MGI:5448135 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004955416:15,447,959...15,450,209 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2157654|PMID:11291865) MGI PMID:11291865 MGI:2157654 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095
JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004955490:9,167,071...9,172,101
Ensembl chrNW_004955490:9,167,183...9,169,773
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:4459001|PMID:20346937)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:20346937 MGI:3613215 MGI:4459001 NCBI chrNW_004955411:11,418,744...11,422,766 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:1195384|PMID:9420335) MGI PMID:9420335 MGI:1195384 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO (MGI:4459001|PMID:20346937) MGI PMID:20346937 MGI:4459001 NCBI chrNW_004955493:6,888,832...6,894,840
Ensembl chrNW_004955493:6,888,832...6,894,831
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3034157|PMID:14960495) MGI PMID:14960495 MGI:3034157 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chrNW_004955451:17,013,180...17,022,131
Ensembl chrNW_004955451:17,012,982...17,022,186
JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (MGI:2669571|PMID:12925591) MGI PMID:12925591 MGI:2669571 NCBI chrNW_004955410:18,924,669...18,988,478
Ensembl chrNW_004955410:18,924,605...18,988,478
JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chrNW_004955429:2,682,341...2,783,752
Ensembl chrNW_004955429:2,682,343...2,783,752
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920) MGI PMID:12636920 MGI:3037351 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3702797|PMID:16943278) MGI PMID:16943278 MGI:3702797 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5296388|PMID:22072575) UniProt PMID:22072575 MGI:5296388 NCBI chrNW_004955419:4,604,883...4,626,675
Ensembl chrNW_004955419:4,607,507...4,626,608
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3578712|PMID:15902259)
UniProt
MGI
PMID:15902259 PMID:23072809 MGI:3578712 MGI:5545944 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (MGI:1095777|PMID:9272948)
(MGI:3620337|PMID:15170697)
MGI PMID:9272948 PMID:15170697 MGI:1095777 MGI:3620337 NCBI chrNW_004955468:70,714...78,831
Ensembl chrNW_004955468:71,004...78,827
JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931) MGI PMID:15937931 MGI:3583034 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173
JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (MGI:3771770|PMID:18064677) UniProt PMID:18064677 MGI:3771770 NCBI chrNW_004955450:14,867,941...14,902,990 JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (MGI:3046002|PMID:15170214)
(MGI:2152470|PMID:11641270), (MGI:4367298|PMID:19779553)
MGI PMID:11641270 PMID:15170214 PMID:19779553 MGI:2152470 MGI:3046002 MGI:4367298 NCBI chrNW_004955467:8,837,895...8,841,062
Ensembl chrNW_004955467:8,837,886...8,841,739
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (MGI:3583034|PMID:15937931)
(MGI:3709911|PMID:17325035)
MGI PMID:15937931 PMID:17325035 MGI:3583034 MGI:3709911 NCBI chrNW_004955451:16,192,228...16,197,103
Ensembl chrNW_004955451:16,191,186...16,197,574
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (MGI:1334099|PMID:10090727)
(MGI:3510574|PMID:15545629)
MGI PMID:10090727 PMID:15545629 MGI:1334099 MGI:3510574 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within
ISO (MGI:5545944|PMID:23072809)
(MGI:3774705|PMID:18234727)
UniProt
MGI
PMID:18234727 PMID:23072809 MGI:3774705 MGI:5545944 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3578712|PMID:15902259) MGI PMID:15902259 MGI:3578712 NCBI chrNW_004955416:15,447,959...15,450,209 JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (MGI:3603078|PMID:16000382) MGI PMID:16000382 MGI:3603078 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO (MGI:1928575|PMID:11124811), (MGI:5545970|PMID:21750544) MGI PMID:11124811 PMID:21750544 MGI:1928575 MGI:5545970 NCBI chrNW_004955469:617,029...617,610
Ensembl chrNW_004955469:617,029...617,610
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (MGI:3849775|PMID:19531352)
(MGI:1861090|PMID:10929709)
(MGI:78390|PMID:8565825)
MGI PMID:8565825 PMID:10929709 PMID:19531352 MGI:1861090 MGI:3849775 MGI:78390 NCBI chrNW_004955405:19,345,943...19,348,453
Ensembl chrNW_004955405:19,345,943...19,348,453
JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO (MGI:76810|PMID:7588068) MGI PMID:7588068 MGI:76810 NCBI chrNW_004955405:19,336,798...19,338,610
Ensembl chrNW_004955405:19,336,718...19,338,670
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702
JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004955403:46,807,846...46,809,924
Ensembl chrNW_004955403:46,806,178...46,836,310
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (MGI:5608942|PMID:24875805) MGI PMID:24875805 MGI:5608942 NCBI chrNW_004955481:9,821,329...9,830,350
Ensembl chrNW_004955481:9,821,329...9,830,555
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chrNW_004955415:29,413,253...29,420,682
Ensembl chrNW_004955415:29,413,253...29,420,682
JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (MGI:2451199|PMID:12591245) MGI PMID:12591245 MGI:2451199 NCBI chrNW_004955404:50,403,752...50,413,264 JBrowse link
G Plxna2 plexin A2 acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004955489:3,914,137...4,116,780
Ensembl chrNW_004955489:3,914,633...4,116,825
JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:2660984|PMID:12697902) MGI PMID:12697902 MGI:2660984 NCBI chrNW_004955422:28,809,901...28,833,186
Ensembl chrNW_004955422:28,809,901...28,833,186
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176) MGI PMID:9636176 MGI:1267118 NCBI chrNW_004955427:19,188,512...19,206,050
Ensembl chrNW_004955427:19,188,183...19,206,050
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (MGI:3624894|PMID:16687486) MGI PMID:16687486 MGI:3624894 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553)
(MGI:87649|PMID:9153393)
MGI PMID:9153393 PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 MGI:87649 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (MGI:1347695|PMID:10557208), (MGI:4367298|PMID:19779553) MGI PMID:10557208 PMID:19779553 MGI:1347695 MGI:4367298 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (MGI:4367298|PMID:19779553) MGI PMID:19779553 MGI:4367298 NCBI chrNW_004955443:18,783,061...19,029,441
Ensembl chrNW_004955443:18,783,061...18,910,228
JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in
ISO (MGI:3715395|PMID:17531978)
(MGI:3613215|PMID:16326386)
MGI
UniProt
PMID:16326386 PMID:17531978 MGI:3613215 MGI:3715395 NCBI chrNW_004955411:11,418,744...11,422,766 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:3037488|PMID:14745966) MGI PMID:14745966 MGI:3037488 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774
JBrowse link
G Sema3c semaphorin 3C acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004955410:4,795,658...4,953,460
Ensembl chrNW_004955410:4,794,477...4,954,906
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359)
(PMID:10654605)
MGI
BHF-UCL
PMID:10654605 PMID:16467359 MGI:3618960 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3618960|PMID:16467359) MGI PMID:16467359 MGI:3618960 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (MGI:5918349|PMID:28893950) MGI PMID:28893950 MGI:5918349 NCBI chrNW_004955414:22,322,954...22,324,412
Ensembl chrNW_004955414:22,323,031...22,324,367
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (MGI:3044041|PMID:15155583) MGI PMID:15155583 MGI:3044041 NCBI chrNW_004955411:12,194,560...12,232,374
Ensembl chrNW_004955411:12,194,550...12,232,374
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171)
(MGI:3701028|PMID:16835439)
(MGI:64493|PMID:8293872)
MGI PMID:8293872 PMID:15384171 PMID:16835439 MGI:3056222 MGI:3701028 MGI:64493 NCBI chrNW_004955439:15,675,680...15,683,542
Ensembl chrNW_004955439:15,676,095...15,683,554
JBrowse link
G Tcap titin-cap acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004955451:14,413,657...14,414,735
Ensembl chrNW_004955451:14,413,657...14,414,735
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (MGI:84545|PMID:8955271) MGI PMID:8955271 MGI:84545 NCBI chrNW_004955597:446,489...452,003
Ensembl chrNW_004955597:446,855...451,949
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (MGI:4453264|PMID:20178780) MGI PMID:20178780 MGI:4453264 NCBI chrNW_004955482:5,404,739...5,415,243
Ensembl chrNW_004955482:5,404,739...5,415,243
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:3709913|PMID:17320900) MGI PMID:17320900 MGI:3709913 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Ttn titin acts_upstream_of_or_within ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004955403:18,057,344...18,328,389 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (MGI:3037351|PMID:12636920)
(MGI:3611726|PMID:16291790), (MGI:64780|PMID:8299937)
MGI PMID:8299937 PMID:12636920 PMID:16291790 MGI:3037351 MGI:3611726 MGI:64780 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:4413372|PMID:19795512) MGI PMID:19795512 MGI:4413372 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO (MGI:3708426|PMID:17116431) MGI PMID:17116431 MGI:3708426 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:3590396|PMID:16157277), (MGI:3624924|PMID:16598713) MGI PMID:16157277 PMID:16598713 MGI:3590396 MGI:3624924 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748
JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955504:2,072,540...2,099,781 JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955504:1,456,433...1,460,996
Ensembl chrNW_004955504:1,455,664...1,460,996
JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004955433:11,944,890...11,948,372
Ensembl chrNW_004955433:11,944,890...11,948,369
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chrNW_004955469:1,954,470...1,961,344
Ensembl chrNW_004955469:1,953,370...1,961,390
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004955408:30,693,893...30,695,453
Ensembl chrNW_004955408:30,694,496...30,695,221
JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (MGI:62488|PMID:8395349) UniProt PMID:8395349 MGI:62488 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (MGI:3611396|PMID:16316641) MGI PMID:16316641 MGI:3611396 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO (MGI:3613099|PMID:16319111) MGI PMID:16319111 MGI:3613099 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO (MGI:3613099|PMID:16319111) MGI PMID:16319111 MGI:3613099 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO (MGI:3053236|PMID:15337776) MGI PMID:15337776 MGI:3053236 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3055483|PMID:15469977) MGI PMID:15469977 MGI:3055483 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3793375|PMID:18257070) MGI PMID:18257070 MGI:3793375 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (MGI:1858546|PMID:10809672) MGI PMID:10809672 MGI:1858546 NCBI chrNW_004955416:28,184,768...28,314,697
Ensembl chrNW_004955416:28,184,768...28,314,759
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12199
    multicellular organismal process 6266
      pattern specification process 448
        regionalization 354
          segmentation 103
            appendage segmentation + 0
            blastoderm segmentation + 19
            brain segmentation 3
            central nervous system segmentation + 5
            renal system segmentation + 1
            segment specification + 14
            somitogenesis + 71
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 12199
    developmental process 5778
      anatomical structure development 5431
        multicellular organism development 4697
          pattern specification process 448
            regionalization 354
              segmentation 103
                appendage segmentation + 0
                blastoderm segmentation + 19
                brain segmentation 3
                central nervous system segmentation + 5
                renal system segmentation + 1
                segment specification + 14
                somitogenesis + 71
                trunk segmentation + 6
paths to the root