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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary rootlet
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Accession:GO:0035253 term browser browse the term
Definition:A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm.
Synonyms:exact_synonym: cilial rootlet;   cilium rootlet


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ciliary rootlet term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein ISO (MGI:3608016|PMID:16018997) RGD PMID:16018997 MGI:3608016 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin ISO MGI:3580447 (MGI:3580205|PMID:15870283), (MGI:3608016|PMID:16018997), (MGI:4950337|PMID:21212183), (MGI:5467890|PMID:23178122), (MGI:6209354|PMID:29891944) RGD PMID:15870283, PMID:16018997, PMID:21212183, PMID:23178122, PMID:29891944 MGI:3580205, MGI:3608016, MGI:4950337, MGI:5467890, MGI:6209354 NCBI chr 5:159,540,453...159,583,194
Ensembl chr 5:159,540,421...159,583,049
JBrowse link
G Kif5a kinesin family member 5A IEA
ISO
GO_REF:0000107
(MGI:3608016|PMID:16018997)
Ensembl
RGD
PMID:16018997 GO_REF:0000107, MGI:3608016 NCBI chr 7:70,515,832...70,552,897
Ensembl chr 7:70,513,343...70,556,827
JBrowse link
G Kif5b kinesin family member 5B ISO (MGI:3608016|PMID:16018997) RGD PMID:16018997 MGI:3608016 NCBI chr17:54,181,416...54,219,048
Ensembl chr17:54,181,419...54,212,096
JBrowse link
G Kif5c kinesin family member 5C IEA
ISO
GO_REF:0000107
(MGI:3608016|PMID:16018997)
Ensembl
RGD
PMID:16018997 GO_REF:0000107, MGI:3608016 NCBI chr 3:35,014,157...35,257,417
Ensembl chr 3:35,014,538...35,257,407
JBrowse link
G Klc1 kinesin light chain 1 ISO PR:Q8CJ40 (MGI:3608016|PMID:16018997) RGD PMID:16018997 MGI:3608016 NCBI chr 6:136,330,151...136,373,716
Ensembl chr 6:136,330,383...136,373,721
JBrowse link
G Klc2 kinesin light chain 2 ISO PR:Q8CJ40 (MGI:3608016|PMID:16018997) RGD PMID:16018997 MGI:3608016 NCBI chr 1:220,492,174...220,502,397
Ensembl chr 1:220,492,176...220,502,272
JBrowse link
G Klc3 kinesin light chain 3 ISO PR:Q8CJ40 (MGI:3608016|PMID:16018997) RGD PMID:16018997 MGI:3608016 NCBI chr 1:80,306,074...80,315,886
Ensembl chr 1:80,306,102...80,315,533
JBrowse link
G Nek4 NIMA-related kinase 4 IDA RGD PMID:21685204 RGD:13204813 NCBI chr16:7,035,002...7,080,272
Ensembl chr16:7,035,068...7,075,554
JBrowse link
G Pjvk pejvakin ISO (MGI:5887150|PMID:28209736) RGD PMID:28209736 MGI:5887150 NCBI chr 3:63,508,386...63,518,163
Ensembl chr 3:63,510,293...63,518,147
JBrowse link
G Psen1 presenilin 1 IBA
ISO
PMID:21873635
(MGI:3608016|PMID:16018997)
RGD PMID:16018997, PMID:21873635 MGI:3608016, RGD:13792537 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Rab28 RAB28, member RAS oncogene family IDA PMID:23746546 UniProt PMID:23746546 RGD:8554122 NCBI chr14:73,888,968...73,963,209
Ensembl chr14:73,889,213...73,963,202
JBrowse link
G Rpgrip1 RPGR interacting protein 1 IDA RGD PMID:21685204 RGD:13204813 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpgrip1l Rpgrip1-like IDA RGD PMID:21685204 RGD:13204813 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      ciliary rootlet 15
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      intracellular anatomical structure 14638
        intracellular organelle 12405
          intracellular non-membrane-bounded organelle 5177
            cytoskeleton 2175
              ciliary rootlet 15
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.