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ONTOLOGY REPORT - ANNOTATIONS

Term:ciliary rootlet
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Accession:GO:0035253 term browser browse the term
Definition:A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm.
Synonyms:exact_synonym: cilial rootlet;   cilium rootlet


show annotations for term's descendants           Sort by:
ciliary rootlet term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein located_in ISO (PMID:16018997) RGD PMID:16018997 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin located_in ISO
IEA		 MGI:3580447 (PMID:15870283), (PMID:16018997), (PMID:21212183), (PMID:23178122), (PMID:29891944)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870283 PMID:16018997 PMID:21212183 PMID:23178122 PMID:29891944 GO_REF:0000107 NCBI chr 5:158,603,979...158,646,728
Ensembl chr 5:153,320,962...153,363,578 		JBrowse link
G Kif5a kinesin family member 5A located_in IEA
ISO		 GO_REF:0000107
(PMID:16018997)		 Ensembl
RGD		 PMID:16018997 GO_REF:0000107 NCBI chr 7:64,937,210...64,974,339
Ensembl chr 7:63,049,424...63,092,858 		JBrowse link
G Kif5b kinesin family member 5B located_in IEA
ISO		 GO_REF:0000107
(PMID:16018997)		 Ensembl
RGD		 PMID:16018997 GO_REF:0000107 NCBI chr17:56,185,386...56,222,990
Ensembl chr17:51,489,944...51,527,508 		JBrowse link
G Kif5c kinesin family member 5C located_in ISO
IEA		 (PMID:16018997)
GO_REF:0000107		 RGD
Ensembl		 PMID:16018997 GO_REF:0000107 NCBI chr 3:54,441,266...54,591,630
Ensembl chr 3:34,032,105...34,182,413 		JBrowse link
G Klc1 kinesin light chain 1 located_in ISO PR:Q8CJ40 (PMID:16018997) RGD PMID:16018997 NCBI chr 6:136,644,592...136,690,399
Ensembl chr 6:130,823,419...130,867,031 		JBrowse link
G Klc2 kinesin light chain 2 located_in ISO PR:Q8CJ40 (PMID:16018997) RGD PMID:16018997 NCBI chr 1:211,843,927...211,854,160
Ensembl chr 1:202,414,557...202,424,672 		JBrowse link
G Klc3 kinesin light chain 3 located_in ISO PR:Q8CJ40 (PMID:16018997) RGD PMID:16018997 NCBI chr 1:88,173,842...88,183,806
Ensembl chr 1:79,045,844...79,055,416 		JBrowse link
G Nek4 NIMA-related kinase 4 IDA RGD PMID:21685204 RGD:13204813 NCBI chr16:6,151,292...6,200,280
Ensembl chr16:6,144,959...6,188,932 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,796,909...28,810,587
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Pjvk pejvakin located_in ISO
IEA		 (PMID:28209736)
GO_REF:0000107		 RGD
Ensembl		 PMID:28209736 GO_REF:0000107 NCBI chr 3:82,002,106...82,012,273
Ensembl chr 3:61,596,641...61,605,045 		JBrowse link
G Psen1 presenilin 1 located_in ISO
IEA		 (PMID:16018997)
GO_REF:0000107		 RGD
Ensembl		 PMID:16018997 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab28 RAB28, member RAS oncogene family located_in IDA PMID:23746546 UniProt PMID:23746546 RGD:8554122 NCBI chr14:73,458,386...73,535,367
Ensembl chr14:69,245,854...69,322,967 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 IDA RGD PMID:21685204 RGD:13204813 NCBI chr15:27,282,997...27,341,021
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpgrip1l Rpgrip1-like IDA RGD PMID:21685204 RGD:13204813 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Spag5 sperm associated antigen 5 located_in ISO
IEA		 (PMID:23351521)
GO_REF:0000107		 RGD
Ensembl		 PMID:23351521 GO_REF:0000107 NCBI chr10:63,693,300...63,714,813
Ensembl chr10:63,198,768...63,216,745 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      ciliary rootlet 16
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        membraneless organelle 5412
          intracellular membraneless organelle 5412
            cytoskeleton 2472
              ciliary rootlet 16
paths to the root