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ONTOLOGY REPORT - ANNOTATIONS


Term:ectopic germ cell programmed cell death
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Accession:GO:0035234 term browser browse the term
Definition:Programmed cell death of an errant germ line cell that is outside the normal migratory path or ectopic to the gonad. This is an important mechanism of regulating germ cell survival within the embryo.
Synonyms:exact_synonym: programmed cell death of ectopic germ cells;   programmed cell death, ectopic germ cells



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ectopic germ cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429|MGI:96677|MGI:96974 (PMID:14660547), (PMID:17107997)
MGI:1857429 (PMID:9988273)
RGD PMID:9988273 PMID:14660547 PMID:17107997 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2l1 Bcl2-like 1 acts_upstream_of ISO MGI:2176699 (PMID:10894153) RGD PMID:10894153 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479
JBrowse link
G Casp2 caspase 2 acts_upstream_of_or_within ISO MGI:107700 (PMID:11536012) RGD PMID:11536012 NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379
JBrowse link
G Casp4 caspase 4 acts_upstream_of_or_within ISO MGI:2159366|MGI:97295 (PMID:11536012) RGD PMID:11536012 NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:3698413 (PMID:24357321)
Ensembl
RGD
PMID:24357321 GO_REF:0000107 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Il1a interleukin 1 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96543 (PMID:11536012)
Ensembl
RGD
PMID:11536012 GO_REF:0000107 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
JBrowse link
G Il1b interleukin 1 beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96542 (PMID:11536012)
Ensembl
RGD
PMID:11536012 GO_REF:0000107 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Insl6 insulin-like 6 acts_upstream_of ISO MGI:4431170 (PMID:19520787) RGD PMID:19520787 NCBI chr 1:227,069,958...227,073,493
Ensembl chr 1:227,069,958...227,073,493
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of
acts_upstream_of_or_within
ISO MGI:1856232 (PMID:18308723)
MGI:99702 (PMID:14660547)
RGD PMID:14660547 PMID:18308723 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO MGI:1856161 (PMID:17107997) RGD PMID:17107997 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Mael maelstrom spermatogenic transposon silencer acts_upstream_of ISO MGI:3795667 (PMID:18694567) RGD PMID:18694567 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO MGI:2667593 (PMID:17145779) RGD PMID:17145779 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Sod1 superoxide dismutase 1 acts_upstream_of ISO MGI:1857873 (PMID:16036348) RGD PMID:16036348 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Syce3 synaptonemal complex central element protein 3 acts_upstream_of ISO (PMID:20407872) RGD PMID:20407872 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp2 synaptonemal complex protein 2 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:3526164 (PMID:16717126)
Ensembl
RGD
PMID:16717126 GO_REF:0000107 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of ISO MGI:3526163 (PMID:18316482) RGD PMID:18316482 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Topaz1 testis and ovary specific TOPAZ 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5700076 (PMID:26358182)
Ensembl
RGD
PMID:26358182 GO_REF:0000107 NCBI chr 8:122,358,243...122,412,875
Ensembl chr 8:122,358,243...122,412,875
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of ISO MGI:2183933 (PMID:12556476) RGD PMID:12556476 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
G Unc5c unc-5 netrin receptor C involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857852 (PMID:18077458)
Ensembl
RGD
PMID:18077458 GO_REF:0000107 NCBI chr 2:230,180,353...230,535,219
Ensembl chr 2:230,180,951...230,535,217
JBrowse link
G Ybx3 Y box binding protein 3 acts_upstream_of ISO MGI:3693011 (PMID:16954378) RGD PMID:16954378 NCBI chr 4:165,129,747...165,153,101
Ensembl chr 4:165,129,758...165,153,161
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    developmental process 7042
      developmental process involved in reproduction 1232
        ectopic germ cell programmed cell death 20
Path 2
Term Annotations click to browse term
  biological_process 20292
    developmental process 7042
      cellular developmental process 4747
        cell differentiation 4746
          cell development 3304
            programmed cell death involved in cell development 31
              ectopic germ cell programmed cell death 20
paths to the root