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ONTOLOGY REPORT - ANNOTATIONS

Term:miRNA binding
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Accession:GO:0035198 term browser browse the term
Definition:Binding to a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes.
Synonyms:exact_synonym: microRNA binding
 never_in_taxon: NCBITaxon:4896 ! Schizosaccharomyces pombe


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miRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGO1 argonaute RISC component 1 enables IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:92,038,104...92,076,477
Ensembl chr 6:91,984,303...92,215,149 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 enables IEA Ensembl
UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:2,966,794...3,012,388
Ensembl chr 4:2,919,511...3,015,334 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 enables IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:92,081,763...92,225,811
Ensembl chr 6:92,036,834...92,215,149 		JBrowse link
G AGO4 argonaute RISC component 4 enables IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:91,967,499...92,013,030
Ensembl chr 6:91,973,119...92,012,990 		JBrowse link
G DDX21 DExD-box helicase 21 enables IEA Ensembl GO_REF:0000107 NCBI chr14:72,039,985...72,063,778
Ensembl chr14:72,039,982...72,063,773 		JBrowse link
G DICER1 dicer 1, ribonuclease III enables ISO (PMID:18604195) MGI PMID:18604195 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G DND1 DND microRNA-mediated repression inhibitor 1 NOT|enables ISO (PMID:18155131) UniProt PMID:18155131 NCBI chr 2:142,384,526...142,387,407
Ensembl chr 2:142,384,532...142,387,199 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:71,207,141...71,245,863
Ensembl chr 2:71,207,096...71,248,906 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 enables ISO (PMID:32060985) MGI PMID:32060985 NCBI chr 8:879,151...894,968
Ensembl chr 8:879,159...894,964 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:120,361,232...120,400,282
Ensembl chr  X:120,361,367...120,399,831 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:28431233) UniProt PMID:28431233 NCBI chr 5:19,485,033...19,491,418
Ensembl chr 5:19,485,096...19,491,417 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO (PMID:24356509) UniProt PMID:24356509 NCBI chr18:46,205,164...46,215,861
Ensembl chr18:46,205,418...46,215,856 		JBrowse link
G LIN28A lin-28 homolog A enables IEA Ensembl GO_REF:0000107 NCBI chr 6:83,806,178...83,818,550
Ensembl chr 6:83,806,056...83,818,633 		JBrowse link
G MATR3 matrin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:141,179,515...141,230,259
Ensembl chr 2:141,179,566...141,231,015 		JBrowse link
G PNPT1 polyribonucleotide nucleotidyltransferase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:85,595,356...85,639,665
Ensembl chr 3:85,595,392...85,639,690 		JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (PMID:18710938), (PMID:19409607) UniProt PMID:18710938 PMID:19409607 NCBI chr 7:23,564,654...23,570,691 JBrowse link
G PUM1 pumilio RNA binding family member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:87,546,388...87,687,483
Ensembl chr 6:87,547,320...87,687,442 		JBrowse link
G PUM2 pumilio RNA binding family member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:117,857,930...117,965,564
Ensembl chr 3:117,883,673...117,965,293 		JBrowse link
G QKI QKI, KH domain containing RNA binding enables ISS UniProt GO_REF:0000024 NCBI chr 1:4,732,575...4,883,386
Ensembl chr 1:4,735,514...4,883,392 		JBrowse link
G RBM10 RNA binding motif protein 10 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:41,773,232...41,803,656
Ensembl chr  X:41,773,232...41,803,653 		JBrowse link
G RBM14 RNA binding motif protein 14 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:5,776,535...5,784,337
Ensembl chr 2:5,776,539...5,784,337 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:116,204,807...116,292,455
Ensembl chr 9:116,208,799...116,292,381 		JBrowse link
G SOCS3 suppressor of cytokine signaling 3 enables IEA Ensembl GO_REF:0000107 NCBI chr12:3,643,832...3,647,015
Ensembl chr12:3,643,929...3,647,009 		JBrowse link
G SOX2 SRY-box transcription factor 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:119,668,476...119,669,435
Ensembl chr13:119,668,476...119,669,435 		JBrowse link
G SOX4 SRY-box transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:16,886,834...16,895,488
Ensembl chr 7:16,891,319...16,892,752 		JBrowse link
G SPOUT1 SPOUT domain containing methyltransferase 1 enables IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:269,157,173...269,167,154
Ensembl chr 1:269,157,176...269,167,087 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex enables IEA UniProt GO_REF:0000104 NCBI chr 5:18,718,588...18,723,843
Ensembl chr 5:18,718,688...18,723,839 		JBrowse link
G TRIM71 tripartite motif containing 71 enables IEA Ensembl GO_REF:0000107 NCBI chr13:18,762,043...18,835,788
Ensembl chr13:18,761,950...18,831,564 		JBrowse link
G TUT4 terminal uridylyl transferase 4 enables ISO (MGI:6162440|PMID:28671666) UniProt PMID:28671666 MGI:6162440 NCBI chr 6:159,655,658...159,794,450
Ensembl chr 6:159,692,797...159,793,758 		JBrowse link
G TUT7 terminal uridylyl transferase 7 enables ISO (PMID:28671666) UniProt PMID:28671666 NCBI chr10:28,995,564...29,061,179
Ensembl chr10:28,995,565...29,061,176 		JBrowse link
G YBX1 Y-box binding protein 1 enables ISO (PMID:27559612) UniProt PMID:27559612 NCBI chr 6:168,716,782...168,736,475
Ensembl chr 6:168,716,774...168,736,604 		JBrowse link
G ZC3H10 zinc finger CCCH-type containing 10 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:21,506,510...21,513,972
Ensembl chr 5:21,508,218...21,514,590 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A enables IEA Ensembl GO_REF:0000107 NCBI chr 6:93,541,334...93,551,200
Ensembl chr 6:93,541,334...93,551,193 		JBrowse link
G ZC3H7A zinc finger CCCH-type containing 7A enables IEA
IBA		 InterPro
Ensembl
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:31,332,486...31,372,802
Ensembl chr 3:31,332,511...31,372,799 		JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B enables IEA
IBA		 Ensembl
InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:7,148,624...7,201,429
Ensembl chr 5:7,148,627...7,201,059 		JBrowse link
G ZNF346 zinc finger protein 346 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:80,871,576...80,895,592
Ensembl chr 2:80,871,595...80,895,585 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18689
    binding 16248
      organic cyclic compound binding 5538
        nucleic acid binding 3505
          RNA binding 1280
            regulatory RNA binding 51
              miRNA binding 36
                miRNA inhibitor activity via base-pairing 0
paths to the root