Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:tube formation
go back to main search page
Accession:GO:0035148 term browser browse the term
Definition:Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow.
Synonyms:exact_synonym: tube lumen formation
 related_synonym: lumen formation in an anatomical structure


show annotations for term's descendants           Sort by:
 
tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO (PMID:24463812) RGD PMID:24463812 NCBI chr 4:100,067,341...100,099,517
Ensembl chr 4:100,067,341...100,099,517
JBrowse link
G Bcas3 BCAS3, microtubule associated cell migration factor involved_in ISO (MGI:5582152|PMID:22300583) RGD PMID:22300583 MGI:5582152 NCBI chr10:72,756,548...73,271,851
NCBI chr10:72,951,303...73,015,309
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO MGI:2156483 (MGI:3703466|PMID:17276340) RGD PMID:17276340 MGI:3703466 NCBI chr 3:120,726,906...120,764,192
Ensembl chr 3:120,726,906...120,764,192
JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3831615|PMID:19033661)
GO_REF:0000107
(PMID:19033661)
UniProt
RGD
Ensembl
PMID:19033661 GO_REF:0000024 GO_REF:0000107 MGI:3831615 NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 involved_in ISO (PMID:20616313) RGD PMID:20616313 NCBI chr 6:43,348,927...43,363,633
Ensembl chr 6:43,348,958...43,363,335
JBrowse link
G Mir126b microRNA 126b acts_upstream_of_or_within ISO MGI:109484 (MGI:6109167|PMID:29118970) RGD PMID:29118970 MGI:6109167 NCBI chr 3:4,042,488...4,042,560 JBrowse link
G Notch1 notch receptor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20616313)
UniProt
RGD
PMID:20616313 GO_REF:0000024 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 involved_in IBA
ISO
PMID:21873635
(MGI:5285149|PMID:20835237)
RGD PMID:20835237, PMID:21873635 MGI:5285149, RGD:13792537 NCBI chr13:94,888,046...95,100,833
Ensembl chr13:94,888,078...95,112,033
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISS
ISO
GO_REF:0000024
(PMID:19033661)
UniProt
RGD
PMID:19033661 GO_REF:0000024 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:6109167|PMID:29118970)
MGI:5562755 (MGI:6109167|PMID:29118970)
Ensembl
RGD
PMID:29118970 GO_REF:0000107 MGI:6109167 NCBI chr 7:75,573,553...75,598,295
Ensembl chr 7:75,574,967...75,597,276
JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO MGI:5056374 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:5056365 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like acts_upstream_of_or_within ISO MGI:4124253|MGI:4128888 (MGI:6101898|PMID:26787558) RGD PMID:26787558 MGI:6101898 NCBI chr20:14,287,470...14,393,879
Ensembl chr20:14,287,457...14,393,793
JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (MGI:80520|PMID:8622765) RGD PMID:8622765 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
BMP signaling pathway involved in nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA
ISS
(PMID:10021330)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10021330 GO_REF:0000024 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO MGI:1930016 (MGI:3513229|PMID:15569713) RGD PMID:15569713 MGI:3513229 NCBI chr 4:150,202,170...150,249,196
Ensembl chr 4:150,202,058...150,244,372
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97902 (MGI:3513229|PMID:15569713)
Ensembl
RGD
PMID:15569713 GO_REF:0000107 MGI:3513229 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3624584|PMID:16546160)
Ensembl
RGD
PMID:16546160 GO_REF:0000107 MGI:3624584 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (MGI:1927045|PMID:11076684) RGD PMID:11076684 MGI:1927045 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Podxl podocalyxin-like involved_in ISO
ISS
(PMID:15814834)
GO_REF:0000024
RGD
UniProt
PMID:15814834 GO_REF:0000024 NCBI chr 4:58,829,049...58,893,353
Ensembl chr 4:58,829,060...58,893,170
JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:1857642 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:3526437 (MGI:3588895|PMID:16054034) RGD PMID:16054034 MGI:3588895 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937
JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98371 (MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:14,932,348...14,937,336
Ensembl chr10:14,932,348...14,937,336
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98370 (MGI:4939090|PMID:21212101)
UniProt
RGD
PMID:21212101 GO_REF:0000024 MGI:4939090 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
metanephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857453 (MGI:4950307|PMID:21350016)
Ensembl
RGD
PMID:21350016 GO_REF:0000107 MGI:4950307 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:3526437 (MGI:4950307|PMID:21350016) RGD PMID:21350016 MGI:4950307 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937
JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3822373|PMID:19112489)
UniProt
RGD
PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3822373|PMID:19112489)
UniProt
RGD
PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4830282|PMID:19056682) RGD PMID:19056682 MGI:4830282 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
nephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3611949|PMID:16319112)
UniProt
RGD
PMID:16319112 GO_REF:0000024 MGI:3611949 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:4430449|PMID:19913010) RGD PMID:19913010 MGI:4430449 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:2445273|PMID:12435636)
UniProt
RGD
PMID:12435636 GO_REF:0000024 MGI:2445273 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858008 (MGI:3714576|PMID:17537789)
Ensembl
RGD
PMID:17537789 GO_REF:0000107 MGI:3714576 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (MGI:2178881|PMID:11948913) RGD PMID:11948913 MGI:2178881 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166
JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:3818454 (MGI:3818102|PMID:18801334)
GO_REF:0000107
RGD
Ensembl
PMID:18801334, PMID:21873635 GO_REF:0000107 MGI:3818102, RGD:13792537 NCBI chr 5:154,831,697...154,907,646
Ensembl chr 5:154,868,534...154,907,634
JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO UniProtKB:P23359 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P49003 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857719 (MGI:1337194|PMID:10328919)
Ensembl
RGD
PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO MGI:3574034 (MGI:4880797|PMID:21246654) RGD PMID:21246654 MGI:4880797 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO MGI:3574399 (MGI:3530675|PMID:15649475) RGD PMID:15649475 MGI:3530675 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (MGI:3762244|PMID:17565372) RGD PMID:17565372 MGI:3762244 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87860 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87859 (MGI:1327082|PMID:9883720) RGD PMID:9883720 MGI:1327082 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within ISO MGI:2176598 (MGI:3689296|PMID:16981008) RGD PMID:16981008 MGI:3689296 NCBI chr 1:175,443,189...175,447,260
Ensembl chr 1:175,445,088...175,447,259
JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO MGI:1857553 (MGI:81193|PMID:8673125) RGD PMID:8673125 MGI:81193 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO MGI:1888997 (MGI:2149166|PMID:11504943), (MGI:893797|PMID:9216040) RGD PMID:9216040 PMID:11504943 MGI:2149166 MGI:893797 NCBI chr 7:31,699,309...31,784,192
Ensembl chr 7:31,699,885...31,784,192
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2448591 (MGI:1926242|PMID:11044403)
Ensembl
RGD
PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr 1:78,456,409...78,573,374
Ensembl chr 1:78,456,409...78,573,374
JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (MGI:3607949|PMID:16170314) RGD PMID:16170314 MGI:3607949 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bcl10 BCL10, immune signaling adaptor involved_in ISS
ISO
PMID:11163238
(MGI:1930354|PMID:11163238)
RGD PMID:11163238, PMID:11163238 MGI:1930354, RGD:734638 NCBI chr 2:251,805,392...251,814,957
Ensembl chr 2:251,805,392...251,814,957
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4429763|PMID:19850029)
Ensembl
RGD
PMID:19850029 GO_REF:0000107 MGI:4429763 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Brd2 bromodomain containing 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:3,910,555...3,921,074
Ensembl chr20:3,910,555...3,917,426
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO MGI:5708063 (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO MGI:2135272|MGI:3574034|MGI:4829945 (MGI:3530173|PMID:15640247), (MGI:4822542|PMID:20589882), (MGI:4880797|PMID:21246654) RGD PMID:15640247 PMID:20589882 PMID:21246654 MGI:3530173 MGI:4822542 MGI:4880797 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
ISO (MGI:2667273|PMID:12842012)
MGI:107926|MGI:2135272 (MGI:3703464|PMID:17229766)
RGD PMID:12842012 PMID:17229766 MGI:2667273 MGI:3703464 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2385355 (MGI:2384266|PMID:12149478) RGD PMID:12149478 MGI:2384266 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cluap1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5523142 (MGI:5509110|PMID:23742838)
Ensembl
RGD
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2135272 (MGI:2676511|PMID:14512015)
Ensembl
RGD
PMID:14512015 GO_REF:0000107 MGI:2676511 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:3029622|PMID:14966286)
UniProt
RGD
PMID:14966286 GO_REF:0000024 MGI:3029622 NCBI chr 1:214,283,787...214,317,466
Ensembl chr 1:214,283,790...214,317,466
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO MGI:3529997 (MGI:3529660|PMID:15710412) RGD PMID:15710412 MGI:3529660 NCBI chr16:58,776,489...59,247,752
Ensembl chr16:59,077,574...59,247,754
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:2429760 (MGI:2389015|PMID:12421720) RGD PMID:12421720 MGI:2389015 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Enah ENAH, actin regulator acts_upstream_of_or_within ISO MGI:109268|MGI:97549 (MGI:1331576|PMID:10069337), (MGI:3054149|PMID:15371503) RGD PMID:10069337 PMID:15371503 MGI:1331576 MGI:3054149 NCBI chr13:100,297,421...100,415,335
Ensembl chr13:100,300,054...100,414,226
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:21840926)
MGI:4346364 (MGI:4367921|PMID:19877275)
(MGI:4438317|PMID:19767740), (MGI:5296277|PMID:21840926)
GO_REF:0000024
RGD
UniProt
PMID:19767740 PMID:19877275 PMID:21840926 GO_REF:0000024 MGI:4367921 MGI:4438317 MGI:5296277 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO MGI:108474 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr15:48,601,259...48,670,257
Ensembl chr15:48,601,266...48,670,257
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO MGI:108476 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr 7:77,898,329...77,931,034
Ensembl chr 7:77,899,322...77,931,029
JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO MGI:3817643 (MGI:5320488|PMID:22405651) RGD PMID:22405651 MGI:5320488 NCBI chr14:3,204,390...3,247,703
Ensembl chr14:3,204,390...3,247,695
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO MGI:4331210 (MGI:4947318|PMID:21262862)
(MGI:4835348|PMID:20654612), (MGI:4867118|PMID:20978075)
RGD PMID:20654612 PMID:20978075 PMID:21262862 MGI:4835348 MGI:4867118 MGI:4947318 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 involved_in ISO (MGI:3689640|PMID:16949565), (MGI:4835348|PMID:20654612) RGD PMID:16949565 PMID:20654612 MGI:3689640 MGI:4835348 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in
ISO MGI:2137552 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)
(MGI:3714713|PMID:17442300)
RGD PMID:9636176 PMID:15755804 PMID:17442300 MGI:1267118 MGI:3577662 MGI:3714713 NCBI chr 6:72,509,658...72,596,285
Ensembl chr 6:72,510,255...72,596,446
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO MGI:3829198 (MGI:3828200|PMID:18930042) RGD PMID:18930042 MGI:3828200 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:3711317 (MGI:3709911|PMID:17325035) RGD PMID:17325035 MGI:3709911 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within ISO MGI:3578531 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr 1:253,220,038...253,275,523
Ensembl chr 1:253,221,812...253,275,490
JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1890208 (MGI:2154554|PMID:11719201)
Ensembl
RGD
PMID:11719201 GO_REF:0000107 MGI:2154554 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within ISO MGI:3578174 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr14:44,507,217...44,524,287
Ensembl chr14:44,507,218...44,524,252
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within
involved_in
ISO MGI:3035827|MGI:3574586 (MGI:3029621|PMID:14966285), (MGI:3573996|PMID:15691703)
(MGI:3689640|PMID:16949565)
RGD PMID:14966285 PMID:15691703 PMID:16949565 MGI:3029621 MGI:3573996 MGI:3689640 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G LOC100909544 bromodomain-containing protein 2-like acts_upstream_of_or_within ISO MGI:3840071 (MGI:6120662|PMID:19362612) RGD PMID:19362612 MGI:6120662 NCBI chr20:3,910,555...3,918,348
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5603707|PMID:24639464)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24639464 GO_REF:0000024 GO_REF:0000107 MGI:5603707 NCBI chr 3:55,665,153...55,822,484
Ensembl chr 3:55,665,145...55,822,551
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1861309|MGI:2673982|MGI:4415718|MGI:98958 (MGI:1347661|PMID:10545599), (MGI:3055483|PMID:15469977), (MGI:4413372|PMID:19795512), (MGI:4413396|PMID:19653321)
RGD PMID:10545599 PMID:15469977 PMID:19653321 PMID:19795512, PMID:21873635 MGI:1347661 MGI:3055483 MGI:4413372 MGI:4413396 MGI:61254, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839484 (MGI:4839483|PMID:20630950) RGD PMID:20630950 MGI:4839483 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4410614|MGI:4433029 (MGI:4367169|PMID:19776033), (MGI:5487695|PMID:23454480)
Ensembl
RGD
PMID:19776033 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:5487695 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330) RGD PMID:23704330 MGI:5503248 NCBI chr 6:99,282,850...99,350,367
Ensembl chr 6:99,282,850...99,350,340
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO (PMID:25855017), (PMID:29222906) RGD PMID:25855017 PMID:29222906 NCBI chr 5:164,844,642...164,864,360
Ensembl chr 5:164,845,925...164,860,910
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856173|MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase acts_upstream_of_or_within ISO MGI:3578528 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO MGI:108360 (MGI:1331576|PMID:10069337) RGD PMID:10069337 MGI:1331576 NCBI chr10:57,273,003...57,275,708
Ensembl chr10:57,273,005...57,275,708
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352
JBrowse link
G Plxnb2 plexin B2 involved_in ISO (MGI:3712712|PMID:17554007) RGD PMID:17554007 MGI:3712712 NCBI chr 7:130,135,484...130,161,568
Ensembl chr 7:130,135,464...130,151,880
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA
(PMID:21901791)
GO_REF:0000107
RGD
Ensembl
PMID:21901791 GO_REF:0000107 NCBI chr 7:134,702,964...134,799,437
Ensembl chr 7:134,702,964...134,722,215
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97760 (MGI:5308523|PMID:22007132)
Ensembl
RGD
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO MGI:97592 (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 2:252,602,197...252,691,886
Ensembl chr 2:252,605,307...252,691,886
JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO MGI:1857447 (MGI:1095757|PMID:9262482) RGD PMID:9262482 MGI:1095757 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:2135272|MGI:3046905|MGI:3640803 (MGI:3046397|PMID:15229603), (MGI:4830023|PMID:20704721) RGD PMID:15229603 PMID:20704721 MGI:3046397 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO MGI:2137533 (MGI:1267118|PMID:9636176)
(MGI:69552|PMID:7720556)
RGD PMID:7720556 PMID:9636176 MGI:1267118 MGI:69552 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Rala RAS like proto-oncogene A involved_in ISO (MGI:5504565|PMID:23063435) RGD PMID:23063435 MGI:5504565 NCBI chr17:49,676,073...49,729,133
Ensembl chr17:49,714,294...49,727,664
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO MGI:3029714 (MGI:3027667|PMID:14749425) RGD PMID:14749425 MGI:3027667 NCBI chr 1:134,699,053...134,742,512
Ensembl chr 1:134,699,299...134,742,514
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (MGI:3703464|PMID:17229766) RGD PMID:17229766 MGI:3703464 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO MGI:3043039 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 6:47,899,525...47,904,389
Ensembl chr 6:47,899,525...47,904,437
JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:2139360 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within ISO MGI:1889585|MGI:3699175 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr 3:165,520,155...165,538,176
Ensembl chr 3:165,520,392...165,537,940
JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
ISO (PMID:22095531)
MGI:1889322|MGI:2135272|MGI:5056373 (MGI:4819429|PMID:20643356), (MGI:5050793|PMID:21515572)
RGD PMID:20643356 PMID:21515572 PMID:22095531 MGI:4819429 MGI:5050793 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO MGI:2135272 (MGI:5498591|PMID:23760952) RGD PMID:23760952 MGI:5498591 NCBI chr 3:160,872,503...160,891,190
Ensembl chr 3:160,872,503...160,891,190
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2135272|MGI:4440621 (MGI:4438817|PMID:19966784), (MGI:4439427|PMID:20215345) RGD PMID:19966784 PMID:20215345 MGI:4438817 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Sema4c semaphorin 4C involved_in ISO (MGI:4881530|PMID:21122816) RGD PMID:21122816 MGI:4881530 NCBI chr 9:43,129,413...43,140,442
Ensembl chr 9:43,129,415...43,139,870
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO MGI:108078 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:892014 (MGI:4429763|PMID:19850029) RGD PMID:19850029 MGI:4429763 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO MGI:1889778 (MGI:3610718|PMID:16249236) RGD PMID:16249236 MGI:3610718 NCBI chr14:16,622,767...16,903,265
Ensembl chr14:16,622,760...16,903,242
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:1095997|PMID:9284043) RGD PMID:9284043 MGI:1095997 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO MGI:1338031|MGI:1338881 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 3:111,049,132...111,061,991
Ensembl chr 3:111,049,118...111,062,011
JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:1338033|MGI:1338881|MGI:2156187 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 1:87,199,373...87,221,826
Ensembl chr 1:87,199,313...87,221,892
JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO MGI:1338031|MGI:1338033 (MGI:4360135|PMID:19592578) RGD PMID:19592578 MGI:4360135 NCBI chr 8:32,240,113...32,280,813
Ensembl chr 8:32,240,133...32,280,869
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO MGI:1856158 (MGI:3701028|PMID:16835439) RGD PMID:16835439 MGI:3701028 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:3763367 (MGI:3763398|PMID:17868131) RGD PMID:17868131 MGI:3763398 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:1313057|PMID:9811866), (MGI:80519|PMID:8622766) RGD PMID:8622766 PMID:9811866 MGI:1313057 MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (MGI:74339|PMID:7600998) RGD PMID:7600998 MGI:74339 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO MGI:3698004 (MGI:3697552|PMID:17082251) RGD PMID:17082251 MGI:3697552 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (MGI:2181331|PMID:11007897) RGD PMID:11007897 MGI:2181331 NCBI chr 3:91,252,829...91,271,607
Ensembl chr 3:91,252,829...91,271,607
JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO MGI:4123844 (MGI:4356244|PMID:19098426) RGD PMID:19098426 MGI:4356244 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO MGI:2183146 (MGI:2137425|PMID:11438694) RGD PMID:11438694 MGI:2137425 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO MGI:1926345 (MGI:1333508|PMID:10096549) RGD PMID:10096549 MGI:1333508 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:3664273 (MGI:3841513|PMID:19223390) RGD PMID:19223390 MGI:3841513 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (MGI:72096|PMID:7729687) RGD PMID:7729687 MGI:72096 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:105056|MGI:107926|MGI:1100883|MGI:1349164|MGI:1857642|MGI:1918711|MGI:1923799|MGI:2139764|MGI:98958 (MGI:2153976|PMID:11709546), (MGI:2449213|PMID:12499390), (MGI:2676511|PMID:14512015), (MGI:3046397|PMID:15229603), (MGI:3703464|PMID:17229766), (MGI:3714704|PMID:17433286), (MGI:4438817|PMID:19966784), (MGI:4880797|PMID:21246654), (MGI:5498591|PMID:23760952) RGD PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 PMID:17433286 PMID:19966784 PMID:21246654 PMID:23760952 MGI:2153976 MGI:2449213 MGI:2676511 MGI:3046397 MGI:3703464 MGI:3714704 MGI:4438817 MGI:4880797 MGI:5498591 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Vasp vasodilator-stimulated phosphoprotein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:108360 (MGI:3054149|PMID:15371503)
RGD PMID:15371503, PMID:21873635 MGI:3054149, RGD:13792537 NCBI chr 1:80,170,608...80,185,882
Ensembl chr 1:80,170,619...80,185,882
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:1298218|MGI:2135272 (MGI:3714704|PMID:17433286), (MGI:4413372|PMID:19795512) RGD PMID:17433286 PMID:19795512 MGI:3714704 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (MGI:3624924|PMID:16598713) RGD PMID:16598713 MGI:3624924 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr15:108,908,366...108,913,812
Ensembl chr15:108,908,607...108,912,737
JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO MGI:3052154 (MGI:3051968|PMID:15136147) RGD PMID:15136147 MGI:3051968 NCBI chr15:108,891,992...108,907,601
Ensembl chr15:108,891,992...108,898,703
JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brpf1 bromodomain and PHD finger containing, 1 acts_upstream_of_or_within ISO MGI:5705132 (MGI:5806011|PMID:27528195) RGD PMID:27528195 MGI:5806011 NCBI chr 4:145,264,445...145,280,943
Ensembl chr 4:145,264,462...145,280,857
JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO MGI:3609638 (MGI:3609631|PMID:12404118) RGD PMID:12404118 MGI:3609631 NCBI chr 9:65,614,142...65,662,624
Ensembl chr 9:65,614,142...65,662,106
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:2179743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO MGI:2158322 (MGI:2154585|PMID:11716496) RGD PMID:11716496 MGI:2154585 NCBI chr 1:188,176,060...188,190,874
Ensembl chr 1:188,174,874...188,190,860
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO MGI:2682066 (MGI:2679893|PMID:14603322) RGD PMID:14603322 MGI:2679893 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO MGI:3583918 (MGI:3583505|PMID:15939867) RGD PMID:15939867 MGI:3583505 NCBI chr20:18,457,309...18,489,884
Ensembl chr20:18,457,310...18,489,833
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (MGI:3607973|PMID:16260493) RGD PMID:16260493 MGI:3607973 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416
Ensembl chr 9:47,186,558...47,244,416
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
JBrowse link
G Nup50 nucleoporin 50 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103561|MGI:107532|MGI:2152414|MGI:2385621|MGI:2386173 (MGI:1860670|PMID:10891500)
Ensembl
RGD
PMID:10891500 GO_REF:0000107 MGI:1860670 NCBI chr 7:125,833,557...125,850,830
Ensembl chr 7:125,833,557...125,850,827
JBrowse link
G Ptch1 patched 1 involved_in ISO (MGI:3687672|PMID:10500113) RGD PMID:10500113 MGI:3687672 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:8124714 RGD:69996 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Stk3 serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1929004 (MGI:4412133|PMID:19786569)
Ensembl
RGD
PMID:19786569 GO_REF:0000107 MGI:4412133 NCBI chr 7:73,617,926...73,883,896
Ensembl chr 7:73,618,644...73,883,812
JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO MGI:1928487 (MGI:4412133|PMID:19786569) RGD PMID:19786569 MGI:4412133 NCBI chr 3:160,467,552...160,546,540
Ensembl chr 3:160,467,552...160,546,540
JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (MGI:2136130|PMID:11406614) RGD PMID:11406614 MGI:2136130 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:95517 (MGI:2683889|PMID:14623822) RGD PMID:14623822 MGI:2683889 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:95517 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:1197797 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO MGI:1931124 (MGI:1206234|PMID:9620767) RGD PMID:9620767 MGI:1206234 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1932522|MGI:2385468 (MGI:3795349|PMID:18377888)
UniProt
RGD
PMID:18377888 GO_REF:0000024 MGI:3795349 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tcap titin-cap acts_upstream_of_or_within ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411
JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1918711|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:106613 (MGI:3624185|PMID:16571627)
RGD PMID:16571627, PMID:21873635 MGI:3624185, RGD:13792537 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2135272|MGI:2429760|MGI:94941 (MGI:3624185|PMID:16571627)
RGD PMID:16571627, PMID:21873635 MGI:3624185, RGD:13792537 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2135272 (MGI:3821448|PMID:19008950)
RGD PMID:19008950, PMID:21873635 MGI:3821448, RGD:13792537 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302
JBrowse link
G Fzd1 frizzled class receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1888513|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr 4:26,470,864...26,475,262
Ensembl chr 4:26,470,864...26,475,262
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1196625|MGI:2135272 (MGI:4837757|PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:108078|MGI:1860298|MGI:2135272 (MGI:3793375|PMID:18257070)
Ensembl
RGD
PMID:18257070 GO_REF:0000107 MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:1860298|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Sfrp5 secreted frizzled-related protein 5 acts_upstream_of_or_within ISO MGI:108078|MGI:2135272|MGI:892014 (MGI:3793375|PMID:18257070) RGD PMID:18257070 MGI:3793375 NCBI chr 1:261,442,108...261,446,570
Ensembl chr 1:261,442,108...261,446,570
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:106613|MGI:108078|MGI:108100|MGI:1100883|MGI:1196625|MGI:1857642|MGI:1860298|MGI:1888513|MGI:1918711|MGI:2655333|MGI:892014 (MGI:3624185|PMID:16571627), (MGI:3793375|PMID:18257070), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4830023|PMID:20704721), (MGI:4837757|PMID:20940229) RGD PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 PMID:20940229 MGI:3624185 MGI:3793375 MGI:3821448 MGI:4819429 MGI:4830023 MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617 (MGI:4830282|PMID:19056682)
Ensembl
RGD
PMID:19056682 GO_REF:0000107 MGI:4830282 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
positive regulation of epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor involved_in ISO (PMID:31915155) RGD PMID:31915155 NCBI chr 2:68,820,616...68,895,537 JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:31915155) RGD PMID:31915155 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta involved_in ISO UniProtKB:P01133|UniProtKB:P09038|UniProtKB:P15692 (PMID:31915155) RGD PMID:31915155 NCBI chr 5:166,602,053...166,628,028
Ensembl chr 5:166,602,053...166,628,028
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:31915155) RGD PMID:31915155 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3822373|PMID:19112489)
UniProt
RGD
PMID:19112489 GO_REF:0000024 MGI:3822373 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:8657307)
UniProt
Ensembl
RGD
PMID:8657307 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5009396|PMID:17300925) RGD PMID:17300925 MGI:5009396 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (MGI:4438817|PMID:19966784) RGD PMID:19966784 MGI:4438817 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IDA PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (MGI:1353705|PMID:10693795) RGD PMID:10693795 MGI:1353705 NCBI chr 6:33,496,596...33,507,626
Ensembl chr 6:33,503,217...33,507,542
JBrowse link
salivary gland cavitation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (MGI:3826736|PMID:18816447) RGD PMID:18816447 MGI:3826736 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO (MGI:3617077|PMID:12629675) RGD PMID:12629675 MGI:3617077 NCBI chr  X:69,730,123...70,222,693
Ensembl chr  X:69,730,242...70,220,329
JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO (MGI:3617077|PMID:12629675) RGD PMID:12629675 MGI:3617077 NCBI chr20:28,179,132...28,263,092
Ensembl chr20:28,179,140...28,263,037
JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:3530139 (MGI:5616978|PMID:25403566) RGD PMID:25403566 MGI:5616978 NCBI chr 5:100,436,343...100,647,962
Ensembl chr 5:100,439,082...100,647,727
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3611172|PMID:16332353)
Ensembl
RGD
PMID:16332353 GO_REF:0000107 MGI:3611172 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Tgm2 transglutaminase 2 acts_upstream_of_or_within ISO (MGI:3588002|PMID:15970210) RGD PMID:15970210 MGI:3588002 NCBI chr 3:154,597,165...154,627,257
Ensembl chr 3:154,597,168...154,627,257
JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (MGI:3575490|PMID:15765517) RGD PMID:15765517 MGI:3575490 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Irx1 iroquois homeobox 1 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,910,912...33,916,741
Ensembl chr 1:33,910,912...33,916,741
JBrowse link
G Irx2 iroquois homeobox 2 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,270,388...33,275,868
Ensembl chr 1:33,271,977...33,275,540
JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3697513|PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO MGI:1857617 (MGI:3833777|PMID:19100728) RGD PMID:19100728 MGI:3833777 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3611949|PMID:16319112)
UniProt
RGD
PMID:16319112 GO_REF:0000024 MGI:3611949 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA
ISO
GO_REF:0000107
(MGI:81287|PMID:8657307)
Ensembl
RGD
PMID:8657307 GO_REF:0000107 MGI:81287 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (MGI:3714585|PMID:17522159) RGD PMID:17522159 MGI:3714585 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO MGI:1934916 (MGI:1270048|PMID:9637690) RGD PMID:9637690 MGI:1270048 NCBI chr 2:250,467,428...250,600,517
Ensembl chr 2:250,467,429...250,600,517
JBrowse link
G Nog noggin involved_in IEA
ISO
GO_REF:0000107
(MGI:3714585|PMID:17522159)
Ensembl
RGD
PMID:17522159 GO_REF:0000107 MGI:3714585 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure formation involved in morphogenesis 1215
        tube formation 183
          epithelial tube formation + 168
          lumen formation, open tracheal system 0
          semicircular canal formation + 2
          tube closure + 114
          tube lumen cavitation + 6
Path 2
Term Annotations click to browse term
  biological_process 19634
    developmental process 6783
      anatomical structure development 6259
        multicellular organism development 5741
          tube development 1217
            tube morphogenesis 938
              tube formation 183
                epithelial tube formation + 168
                lumen formation, open tracheal system 0
                semicircular canal formation + 2
                tube closure + 114
                tube lumen cavitation + 6
paths to the root