Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:hindlimb morphogenesis
go back to main search page
Accession:GO:0035137 term browser browse the term
Definition:The process in which the anatomical structures of the hindlimb are generated and organized.


show annotations for term's descendants           Sort by:
hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856099 RGD MGI:61157 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:2158390|MGI:2176182 (PMID:16556916)
GO_REF:0000107		 RGD
Ensembl		 PMID:16556916 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Fmn1 formin 1 acts_upstream_of_or_within ISO MGI:3718051 (PMID:17554679) RGD PMID:17554679 NCBI chr 3:100,101,103...100,485,652
Ensembl chr 3:100,134,549...100,479,220 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:1855974|MGI:1856810 (PMID:17085896), (PMID:8145850)
GO_REF:0000107		 RGD
Ensembl		 PMID:8145850 PMID:17085896 GO_REF:0000107 NCBI chr 3:164,914,401...164,918,593
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA		 MGI:96210 (PMID:10642795)
GO_REF:0000107		 RGD
Ensembl		 PMID:10642795 GO_REF:0000107 NCBI chr 3:80,001,947...80,005,156
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd9 homeo box D9 acts_upstream_of_or_within ISO
IEA		 MGI:96202 (PMID:10642795)
GO_REF:0000107		 RGD
Ensembl		 PMID:10642795 GO_REF:0000107 NCBI chr 3:80,008,006...80,010,186
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857659|MGI:1934200 (PMID:10049363), (PMID:10101115), (PMID:15621531), (PMID:16989801)
GO_REF:0000107		 RGD
Ensembl		 PMID:10049363 PMID:10101115 PMID:15621531 PMID:16989801 GO_REF:0000107 NCBI chr17:8,794,051...8,805,477
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857447 (PMID:9262482)
GO_REF:0000107		 RGD
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:109295 (PMID:19168674) RGD PMID:19168674 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Sall3 spalt-like transcription factor 3 acts_upstream_of_or_within ISO MGI:1889585 (PMID:19168674) RGD PMID:19168674 NCBI chr18:76,680,997...76,700,905
Ensembl chr18:74,407,560...74,426,789 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21829553)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21829553 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:29,282,703...29,312,568
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2157489 (PMID:10700192) RGD PMID:10700192 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO MGI:1857009 RGD MGI:48652 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA		 MGI:2182708 (PMID:10835630)
GO_REF:0000107		 RGD
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff3 ALF transcription elongation factor 3 involved_in ISO
IEA		 (PMID:18616733)
GO_REF:0000107		 RGD
Ensembl		 PMID:18616733 GO_REF:0000107 NCBI chr 9:47,894,903...48,352,380
Ensembl chr 9:40,404,375...40,857,247 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:108359 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 2:197,919,381...197,929,795
Ensembl chr 2:195,231,197...195,241,609 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA		 MGI:1277097 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:104903 (PMID:10964473)
GO_REF:0000107		 RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:3588650 (PMID:16207732)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207732 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:2148594|MGI:2158470 (PMID:12923052), (PMID:18231602)
GO_REF:0000107		 RGD
Ensembl		 PMID:12923052 PMID:18231602 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:2450929|MGI:3589208 (PMID:16319892) RGD PMID:16319892 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:99604 (PMID:16245339)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245339 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:95518 (PMID:16245339)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245339 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA		 MGI:3043361 (PMID:15797856)
GO_REF:0000107		 RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:10964473)
GO_REF:0000107		 RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667|MGI:4415718|MGI:98961 (PMID:15880584), (PMID:18256198), (PMID:19653321) RGD PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO MGI:2158381 (PMID:17029558) RGD PMID:17029558 NCBI chr 2:114,837,815...115,393,052
Ensembl chr 2:112,909,321...113,464,590 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:2684189 (PMID:14500757)
GO_REF:0000107		 RGD
Ensembl		 PMID:14500757 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mmp13 matrix metallopeptidase 13 IEP RGD PMID:11850435 RGD:1582550 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1933835|MGI:2158470 (PMID:16245338)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245338 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 UniProtKB:Q9WVG7 (PMID:11520675), (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:11520675 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109340 (PMID:18231602)
GO_REF:0000107
(PMID:22071103)		 RGD
Ensembl		 PMID:18231602 PMID:22071103 GO_REF:0000107 NCBI chr17:8,794,051...8,805,477
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:107374 (PMID:18231602) RGD PMID:18231602 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:10075839)
GO_REF:0000107		 RGD
Ensembl		 PMID:10075839 GO_REF:0000107 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97857 (PMID:10075839)
GO_REF:0000107		 RGD
Ensembl		 PMID:10075839 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1298218|MGI:3045965 (PMID:18256198)
GO_REF:0000107		 RGD
Ensembl		 PMID:18256198 GO_REF:0000107 NCBI chr 7:75,987,217...76,123,984
Ensembl chr 7:74,103,090...74,238,933 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1857796 (PMID:11118883)
GO_REF:0000107		 RGD
Ensembl		 PMID:11118883 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2177413|MGI:3605892 (PMID:16192310) RGD PMID:16192310 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:5538565 (PMID:23844108)
GO_REF:0000107		 RGD
Ensembl		 PMID:23844108 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:31761294) RGD PMID:31761294 NCBI chr10:71,228,145...71,258,222
Ensembl chr10:70,731,163...70,760,825 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA		 MGI:5882553|MGI:5882555 (PMID:25503409)
GO_REF:0000107		 RGD
Ensembl		 PMID:25503409 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988167) RGD PMID:8988167 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16826533)
GO_REF:0000107
MGI:1298218 (PMID:15880584)		 RGD
Ensembl		 PMID:15880584 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IMP
IEA
ISO		 GO_REF:0000107
MGI:2182708 (PMID:10835630)		 Ensembl
RGD		 PMID:10835630 PMID:19191224 GO_REF:0000107, RGD:2312786 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
post-embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:24722207)
GO_REF:0000107		 RGD
Ensembl		 PMID:24722207 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:24101522) RGD PMID:24101522 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure morphogenesis 3018
        appendage morphogenesis 183
          limb morphogenesis 183
            hindlimb morphogenesis 47
              embryonic hindlimb morphogenesis 35
              post-embryonic hindlimb morphogenesis 2
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          appendage development 222
            appendage morphogenesis 183
              limb morphogenesis 183
                hindlimb morphogenesis 47
                  embryonic hindlimb morphogenesis 35
                  post-embryonic hindlimb morphogenesis 2
paths to the root