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ONTOLOGY REPORT - ANNOTATIONS


Term:limb morphogenesis
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Accession:GO:0035108 term browser browse the term
Definition:The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
Synonyms:narrow_synonym: limb bud morphogenesis



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limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
JBrowse link
G ASPH aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chr 4:71,902,891...72,107,047
Ensembl chr 4:71,903,318...72,107,044
JBrowse link
G BAK1 BCL2 antagonist/killer 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:29,808,849...29,815,345
Ensembl chr 7:29,808,849...29,815,318
JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,222,336...54,228,147
JBrowse link
G CIBAR1 CBY1 interacting BAR domain containing 1 involved_in ISO (PMID:30395363) UniProt PMID:30395363 NCBI chr 4:42,957,848...42,985,482
Ensembl chr 4:42,957,712...42,985,459
JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718
JBrowse link
G EVX2 even-skipped homeobox 2 acts_upstream_of_or_within ISO (PMID:8978698) MGI PMID:8978698 NCBI chr15:81,881,362...81,884,994
Ensembl chr15:81,881,362...81,885,193
JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,150,667...131,370,466
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248
JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:130,543,911...130,570,486
Ensembl chr 9:130,541,660...130,570,702
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8978698)
(PMID:11543619)
MGI PMID:8978698 PMID:11543619 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:9097952) MGI PMID:9097952 NCBI chr 8:334,604...351,970
Ensembl chr 8:334,617...351,969
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135
JBrowse link
G IQCE IQ motif containing E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:1,861,487...1,903,107
Ensembl chr 3:1,861,204...1,903,035
JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:20589901) MGI PMID:20589901 NCBI chr 1:267,207,273...267,290,862
Ensembl chr 1:267,207,419...267,287,729
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,614...4,653,944
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977)
(PMID:15537447)
MGI PMID:15469977 PMID:15537447 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
JBrowse link
G NFIA nuclear factor I A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:150,834,002...151,229,773
Ensembl chr 6:150,835,494...151,426,749
JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128
JBrowse link
G PCNT pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:98,258,456...98,268,539
Ensembl chr 3:98,258,463...98,268,553
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
JBrowse link
G SIK3 SIK family kinase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:44,223,227...44,471,689
Ensembl chr 9:44,223,232...44,513,831
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:27046536) Ensembl
MGI
PMID:27046536 GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TBX4 T-box transcription factor 4 acts_upstream_of_or_within
involved_in
IEA Ensembl GO_REF:0000107 NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,592,951...112,605,087
Ensembl chr  X:112,593,301...112,604,814
JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,222,336...54,228,147
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:45,156,791...45,202,996
Ensembl chr 3:45,160,155...45,201,186
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
JBrowse link
G B9D1 B9 domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:60,162,656...60,171,586
Ensembl chr12:60,162,713...60,171,961
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:75,191,256...75,210,988
Ensembl chr 4:75,191,257...75,215,906
JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:8,393,610...8,512,843
Ensembl chr 9:8,393,612...8,512,848
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795
JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:22,381,001...22,501,052
Ensembl chr16:22,380,326...22,500,998
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:79,408,322...79,465,827
Ensembl chr 6:79,408,326...79,466,152
JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:10471509)
(PMID:9733575)
MGI PMID:9733575 PMID:10471509 NCBI chr14:112,628,988...112,736,631
Ensembl chr14:112,638,204...112,736,056
JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:130,543,911...130,570,486
Ensembl chr 9:130,541,660...130,570,702
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:13,775,267...14,116,377
Ensembl chr11:13,959,666...14,113,230
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275)
(PMID:27158779)
MGI PMID:19877275 PMID:27158779 NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,668...54,829,506
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chr10:28,509,168...28,511,554
Ensembl chr10:28,509,261...28,510,301
JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:19439426) MGI PMID:19439426 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,528...41,002,156
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
JBrowse link
G GNA12 G protein subunit alpha 12 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:2,002,494...2,105,937
Ensembl chr 3:2,004,471...2,105,952
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674
JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:16,460,089...16,462,979
Ensembl chr14:16,459,971...16,462,207
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,411
JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:19,181,580...19,189,031
Ensembl chr 5:19,178,619...19,189,013
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:12869760)
(PMID:17714700)
(PMID:8900279)
MGI PMID:8900279 PMID:12869760 PMID:17714700 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
JBrowse link
G HOXD12 homeobox D12 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,900,962...81,902,327
Ensembl chr15:81,900,833...81,902,995
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:17714700)
(PMID:8900279)
(PMID:9342042)
MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,719...68,902,060
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135
JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,210,150...46,246,674
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:15930098)
(PMID:15930098)
(PMID:19036983)
(PMID:12701101), (PMID:16254602)
MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:17889828) Ensembl
AgBase
PMID:17889828 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr 8:97,123,062...97,204,659
Ensembl chr 8:97,123,065...97,204,650
JBrowse link
G LMBR1 limb development membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:1,795,462...1,934,951
Ensembl chr18:1,795,497...1,934,947
JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042) MGI PMID:9342042 NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,644...81,805,680
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,614...4,653,944
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15142971)
MGI PMID:15142971 PMID:19795512 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:79,174,444...79,378,520
Ensembl chr15:79,173,033...79,380,993
JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,142...34,512,187
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:121,543,201...121,549,678
Ensembl chr 3:121,543,109...121,549,046
JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,952
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:11044396) Ensembl
Roslin_Institute
PMID:11044396 GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,589,850...100,628,029
JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:41,057,782...41,265,416
Ensembl chr 1:41,057,838...41,265,375
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TBX3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:53,394,500...53,397,064
Ensembl chr12:53,393,332...53,397,064
JBrowse link
G TMEM231 transmembrane protein 231 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:12,140,317...12,163,894
Ensembl chr 6:12,140,687...12,164,140
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:128,489,676...128,640,094
Ensembl chr 1:128,489,744...128,635,511
JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,448...67,238,322
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within
involved_in
IEA Ensembl GO_REF:0000107 NCBI chr 3:78,435,154...78,726,313
Ensembl chr 3:78,268,922...78,856,893
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,047,254...110,058,205
Ensembl chr 4:110,047,116...110,057,872
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,016,954...69,448,428
Ensembl chr 5:69,275,176...69,454,459
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,370...24,407,692
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
JBrowse link
G HOXA13 homeobox A13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,373,340...45,379,046
Ensembl chr18:45,373,440...45,376,325
JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,404,594...45,411,512
Ensembl chr18:45,408,375...45,411,509
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,719...68,902,060
JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:22916278)
(PMID:9342042)
MGI PMID:9342042 PMID:22916278 NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,644...81,805,680
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198)
(PMID:15880584)
(PMID:11029008)
(PMID:19653321)
MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,482...108,335,702
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:236,821,243...236,898,280
Ensembl chr 1:236,821,414...236,898,276
JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:29,415,774...29,577,890
Ensembl chr 4:29,414,752...29,579,674
JBrowse link
G RUNX2 RUNX family transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TBX5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,612
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346
JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 ALF transcription elongation factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,727,885
JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:110,047,254...110,058,205
Ensembl chr 4:110,047,116...110,057,872
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16319892) MGI PMID:16319892 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224
JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248
JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:109,536,495...109,973,605
Ensembl chr  X:109,536,504...109,973,607
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15880584)
(PMID:18256198)
(PMID:19653321)
MGI PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,482...108,335,702
JBrowse link
G MED1 mediator complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,841,205...22,872,409
JBrowse link
G MMP13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chr 9:33,549,003...33,616,700
Ensembl chr 9:33,549,008...33,561,162
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
JBrowse link
G PITX1 paired like homeodomain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18231602) Ensembl
MGI
PMID:18231602 GO_REF:0000107 NCBI chr 2:137,200,424...137,212,500
Ensembl chr 2:137,200,423...137,206,979
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298
JBrowse link
G RARB retinoic acid receptor beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624
JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:29,415,774...29,577,890
Ensembl chr 4:29,414,752...29,579,674
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:16192310) MGI PMID:16192310 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TBX4 T-box transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within
involved_in
IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA
RGD
Ensembl
PMID:19191224 GO_REF:0000107 RGD:2312786 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:28,277,649...28,280,409
Ensembl chr 6:28,277,614...28,280,405
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:96,761,683...96,785,125
Ensembl chr 5:96,763,685...96,785,165
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,956...57,675,986
JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:8,393,610...8,512,843
Ensembl chr 9:8,393,612...8,512,848
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16040801) MGI PMID:16040801 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,288
JBrowse link
G DLX5 distal-less homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:76,639,915...76,643,689
Ensembl chr 9:76,639,561...76,643,884
JBrowse link
G DLX6 distal-less homeobox 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:76,623,489...76,630,296
Ensembl chr 9:76,625,117...76,630,275
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:33,720,920...34,039,954
Ensembl chr 9:33,720,877...34,040,188
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:7624797) Ensembl
ParkinsonsUK-UCL
PMID:7624797 GO_REF:0000107 NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,370...24,407,692
JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,150,667...131,370,466
JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724
JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chr 8:73,502,368...73,959,454
Ensembl chr 8:73,502,717...73,957,375
JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
JBrowse link
G GJA5 gap junction protein alpha 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:99,854,129...99,871,288
Ensembl chr 4:99,854,392...99,871,286
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,105...136,629,292
JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328
JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,393,525...45,403,259
Ensembl chr18:45,393,885...45,403,257
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
JBrowse link
G HOXC10 homeobox C10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:19,197,810...19,202,975
Ensembl chr 5:19,197,807...19,202,970
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11850178) MGI PMID:11850178 NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,825,161...113,944,070
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:20359476) MGI PMID:20359476 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 involved_in ISO (PMID:12915312) UniProt PMID:12915312 NCBI chr13:92,491,778...92,696,235
Ensembl chr13:92,491,808...92,696,230
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISO (PMID:24052814) UniProt PMID:24052814 NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
JBrowse link
G MOSMO modulator of smoothened acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:24,107,878...24,176,161
Ensembl chr 3:24,107,877...24,176,166
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:19422820)
(PMID:15930102)
MGI PMID:15930102 PMID:19422820 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G MUSTN1 musculoskeletal, embryonic nuclear protein 1 ISO RGD PMID:14718386 RGD:1302424
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G NOTCH2 notch receptor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:100,951,522...101,152,348
Ensembl chr 4:100,981,636...101,150,195
JBrowse link
G PBX1 PBX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:85,824,590...86,170,328
Ensembl chr 4:85,824,666...86,170,191
JBrowse link
G PBX2 PBX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:24,221,565...24,226,940
Ensembl chr 7:24,221,565...24,226,940
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
JBrowse link
G PRRX1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,687...80,501,646
JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,200...269,903,469
JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,190...96,569,130
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,767...14,577,251
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
JBrowse link
G SALL4 spalt like transcription factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:53,082,610...53,103,023
Ensembl chr17:53,084,310...53,103,190
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:12435627) MGI PMID:12435627 NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,236...64,242,560
JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within
involved_in
IEA
ISO
(PMID:15358670) Ensembl
UniProt
PMID:15358670 GO_REF:0000107 NCBI chr 9:89,764,671...89,767,428
Ensembl chr 9:89,762,727...89,767,341
JBrowse link
G SP9 Sp9 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:80,325,449...80,328,111
Ensembl chr15:80,325,377...80,329,020
JBrowse link
G TBX4 T-box transcription factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
JBrowse link
G TBX5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within
IEA Ensembl GO_REF:0000107 NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI MGI:61278 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD6 frizzled class receptor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:33,811,159...33,844,556
Ensembl chr 4:33,809,809...33,844,656
JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21465616) Ensembl
MGI
PMID:21465616 GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
JBrowse link
forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARK2C arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:95,951,387...96,072,522
Ensembl chr 1:95,950,746...96,066,928
JBrowse link
G FMN1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chr 1:136,696,353...137,163,532
Ensembl chr 1:136,704,090...137,163,537
JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821
JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr 1:146,251,591...146,273,778
Ensembl chr 1:146,252,155...146,273,906
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,612
JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:44,745,653...44,774,563
Ensembl chr 7:44,745,827...44,770,606
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI MGI:61157 NCBI chr  X:61,972,544...62,110,058
Ensembl chr  X:61,972,991...62,110,048
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
JBrowse link
G FMN1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chr 1:136,696,353...137,163,532
Ensembl chr 1:136,704,090...137,163,537
JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
JBrowse link
G PITX1 paired like homeodomain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:137,200,424...137,212,500
Ensembl chr 2:137,200,423...137,206,979
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr 1:146,251,591...146,273,778
Ensembl chr 1:146,252,155...146,273,906
JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:44,745,653...44,774,563
Ensembl chr 7:44,745,827...44,770,606
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
JBrowse link
limb bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:10518547)
(PMID:9435295)
UniProt
MGI
PMID:9435295 PMID:10518547 GO_REF:0000024 NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425
JBrowse link
G PLXNA2 plexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:134,584,760...134,800,471
Ensembl chr 9:134,584,406...134,796,063
JBrowse link
G SEMA3C semaphorin 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,114,649...99,432,683
Ensembl chr 9:99,251,715...99,433,224
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
JBrowse link
G ZNF219 zinc finger protein 219 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:78,028,560...78,043,491
Ensembl chr 7:78,035,228...78,043,464
JBrowse link
limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr15:93,556,914...93,595,678
Ensembl chr15:93,526,603...93,596,363
JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:68,667,651...68,682,629
Ensembl chr 6:68,669,153...68,682,623
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540
JBrowse link
G LOC100623720 collagen alpha-1(VI) chain acts_upstream_of_or_within ISO (PMID:22448243) MGI PMID:22448243 NCBI chr13:208,295,245...208,321,789
Ensembl chr13:208,295,451...208,313,127
JBrowse link
post-embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,287
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:24770645) MGI PMID:24770645 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595
JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429
JBrowse link
post-embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:24722207) MGI PMID:24722207
G MIR23A microRNA mir-23a acts_upstream_of_or_within ISO (PMID:24101522) MGI PMID:24101522 NCBI chr 2:65,308,117...65,308,186
Ensembl chr 2:65,308,117...65,308,186
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    developmental process 6794
      anatomical structure morphogenesis 2957
        appendage morphogenesis 181
          limb morphogenesis 181
            embryonic limb morphogenesis + 146
            forelimb morphogenesis + 47
            hindlimb morphogenesis + 47
            limb bud formation + 9
            limb joint morphogenesis + 7
            post-embryonic limb morphogenesis + 5
Path 2
Term Annotations click to browse term
  biological_process 18944
    developmental process 6794
      anatomical structure development 6375
        multicellular organism development 5144
          appendage development 218
            appendage morphogenesis 181
              limb morphogenesis 181
                embryonic limb morphogenesis + 146
                forelimb morphogenesis + 47
                hindlimb morphogenesis + 47
                limb bud formation + 9
                limb joint morphogenesis + 7
                post-embryonic limb morphogenesis + 5
paths to the root