ONTOLOGY REPORT - ANNOTATIONS
Term: limb morphogenesis
Accession: GO:0035108
browse the term
Definition: The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
Synonyms: narrow_synonym: limb bud morphogenesis
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ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
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ASPH
aspartate beta-hydroxylase
acts_upstream_of_or_within
ISO
(PMID:11773073)
MGI
PMID:11773073
NCBI chr 4:71,902,891...72,107,047
Ensembl chr 4:71,903,318...72,107,044
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BAK1
BCL2 antagonist/killer 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:29,808,849...29,815,345
Ensembl chr 7:29,808,849...29,815,318
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BAX
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,222,336...54,228,147
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CIBAR1
CBY1 interacting BAR domain containing 1
involved_in
ISO
(PMID:30395363)
UniProt
PMID:30395363
NCBI chr 4:42,957,848...42,985,482
Ensembl chr 4:42,957,712...42,985,459
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COL2A1
collagen type II alpha 1 chain
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718
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EVX2
even-skipped homeobox 2
acts_upstream_of_or_within
ISO
(PMID:8978698)
MGI
PMID:8978698
NCBI chr15:81,881,362...81,884,994
Ensembl chr15:81,881,362...81,885,193
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FBN2
fibrillin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,150,667...131,370,466
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FGF10
fibroblast growth factor 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509
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FGF8
fibroblast growth factor 8
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248
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FLVCR1
FLVCR choline and heme transporter 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:130,543,911...130,570,486
Ensembl chr 9:130,541,660...130,570,702
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GLI3
GLI family zinc finger 3
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
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HOXD13
homeobox D13
acts_upstream_of_or_within
ISO
(PMID:8978698) (PMID:11543619)
MGI
PMID:8978698 PMID:11543619
NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
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IDUA
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
(PMID:9097952)
MGI
PMID:9097952
NCBI chr 8:334,604...351,970
Ensembl chr 8:334,617...351,969
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IFT140
intraflagellar transport 140
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135
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IQCE
IQ motif containing E
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:1,861,487...1,903,107
Ensembl chr 3:1,861,204...1,903,035
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LMX1B
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
(PMID:20589901)
MGI
PMID:20589901
NCBI chr 1:267,207,273...267,290,862
Ensembl chr 1:267,207,419...267,287,729
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LRP5
LDL receptor related protein 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,614...4,653,944
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LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:15469977) (PMID:15537447)
MGI
PMID:15469977 PMID:15537447
NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
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MEGF8
multiple EGF like domains 8
involved_in
ISO
(PMID:23063620)
UniProt
PMID:23063620
NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
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NFIA
nuclear factor I A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:150,834,002...151,229,773
Ensembl chr 6:150,835,494...151,426,749
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NPR2
natriuretic peptide receptor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128
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PCNT
pericentrin
acts_upstream_of_or_within
ISO
(PMID:20096683)
MGI
PMID:20096683
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PCSK5
proprotein convertase subtilisin/kexin type 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:228,854,587...229,308,054
Ensembl chr 1:228,854,595...229,308,906
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PKDCC
protein kinase domain containing, cytoplasmic
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:98,258,456...98,268,539
Ensembl chr 3:98,258,463...98,268,553
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PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
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PTCH1
patched 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
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RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
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SIK3
SIK family kinase 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:44,223,227...44,471,689
Ensembl chr 9:44,223,232...44,513,831
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TBX3
T-box transcription factor 3
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:27046536)
Ensembl MGI
PMID:27046536
GO_REF:0000107
NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
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TBX4
T-box transcription factor 4
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
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VPS54
VPS54 subunit of GARP complex
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429
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WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
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ZIC3
Zic family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:112,592,951...112,605,087
Ensembl chr X:112,593,301...112,604,814
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BAX
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,222,336...54,228,147
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BCL2L11
BCL2 like 11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:45,156,791...45,202,996
Ensembl chr 3:45,160,155...45,201,186
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NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
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ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
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B9D1
B9 domain containing 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:60,162,656...60,171,586
Ensembl chr12:60,162,713...60,171,961
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BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
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BMPR1A
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
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BPNT2
3'(2'), 5'-bisphosphate nucleotidase 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:75,191,256...75,210,988
Ensembl chr 4:75,191,257...75,215,906
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C2CD3
C2 domain containing 3 centriole elongation regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:8,393,610...8,512,843
Ensembl chr 9:8,393,612...8,512,848
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CHST11
carbohydrate sulfotransferase 11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795
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CPLANE1
ciliogenesis and planar polarity effector complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:22,381,001...22,501,052
Ensembl chr16:22,380,326...22,500,998
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CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
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ECE1
endothelin converting enzyme 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:79,408,322...79,465,827
Ensembl chr 6:79,408,326...79,466,152
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FBXW4
F-box and WD repeat domain containing 4
acts_upstream_of_or_within
ISO
(PMID:10471509) (PMID:9733575)
MGI
PMID:9733575 PMID:10471509
NCBI chr14:112,628,988...112,736,631
Ensembl chr14:112,638,204...112,736,056
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FLVCR1
FLVCR choline and heme transporter 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:130,543,911...130,570,486
Ensembl chr 9:130,541,660...130,570,702
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FREM2
FRAS1 related extracellular matrix 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:13,775,267...14,116,377
Ensembl chr11:13,959,666...14,113,230
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FUZ
fuzzy planar cell polarity protein
acts_upstream_of_or_within
ISO
(PMID:19877275) (PMID:27158779)
MGI
PMID:19877275 PMID:27158779
NCBI chr 6:54,823,680...54,830,425
Ensembl chr 6:54,823,668...54,829,506
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GAS1
growth arrest specific 1
acts_upstream_of_or_within
ISO
(PMID:17504940), (PMID:17504941)
MGI
PMID:17504940 PMID:17504941
NCBI chr10:28,509,168...28,511,554
Ensembl chr10:28,509,261...28,510,301
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GJA1
gap junction protein alpha 1
acts_upstream_of_or_within
ISO
(PMID:19439426)
MGI
PMID:19439426
NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,528...41,002,156
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GLI2
GLI family zinc finger 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
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GLI3
GLI family zinc finger 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
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GNA12
G protein subunit alpha 12
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:2,002,494...2,105,937
Ensembl chr 3:2,004,471...2,105,952
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GNAQ
G protein subunit alpha q
acts_upstream_of_or_within
ISO
(PMID:12077299)
MGI
PMID:12077299
NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674
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GRHL2
grainyhead like transcription factor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:35,368,788...35,565,394
Ensembl chr 4:35,371,136...35,564,919
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HAND2
heart and neural crest derivatives expressed 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:16,460,089...16,462,979
Ensembl chr14:16,459,971...16,462,207
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HDAC1
histone deacetylase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,411
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HDAC2
histone deacetylase 2
involved_in
ISO
(PMID:21093383)
BHF-UCL
PMID:21093383
NCBI chr 1:79,867,713...79,901,597
Ensembl chr 1:79,863,094...79,901,585
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HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
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HOXC11
homeobox C11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:19,181,580...19,189,031
Ensembl chr 5:19,178,619...19,189,013
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HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:12869760) (PMID:17714700) (PMID:8900279)
MGI
PMID:8900279 PMID:12869760 PMID:17714700
NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
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HOXD12
homeobox D12
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,900,962...81,902,327
Ensembl chr15:81,900,833...81,902,995
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HOXD13
homeobox D13
acts_upstream_of_or_within
ISO
(PMID:17714700) (PMID:8900279) (PMID:9342042)
MGI
PMID:8900279 PMID:9342042 PMID:17714700
NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
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IFT122
intraflagellar transport 122
acts_upstream_of_or_within
ISO
(PMID:15755804)
MGI
PMID:15755804
NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,719...68,902,060
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IFT140
intraflagellar transport 140
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135
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IFT52
intraflagellar transport 52
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,210,150...46,246,674
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IFT88
intraflagellar transport 88
acts_upstream_of_or_within
ISO
(PMID:15755804), (PMID:15930098) (PMID:15930098) (PMID:19036983) (PMID:12701101), (PMID:16254602)
MGI
PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983
NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613
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IHH
Indian hedgehog signaling molecule
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:17889828)
Ensembl AgBase
PMID:17889828
GO_REF:0000107
NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
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INTU
inturned planar cell polarity protein
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:97,123,062...97,204,659
Ensembl chr 8:97,123,065...97,204,650
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LMBR1
limb development membrane protein 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:1,795,462...1,934,951
Ensembl chr18:1,795,497...1,934,947
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LNPK
lunapark, ER junction formation factor
acts_upstream_of_or_within
ISO
(PMID:9342042)
MGI
PMID:9342042
NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,644...81,805,680
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LRP4
LDL receptor related protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
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LRP5
LDL receptor related protein 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:4,533,721...4,653,997
Ensembl chr 2:4,533,614...4,653,944
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LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:19795512) (PMID:15142971)
MGI
PMID:15142971 PMID:19795512
NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
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MAP3K20
mitogen-activated protein kinase kinase kinase 20
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:79,174,444...79,378,520
Ensembl chr15:79,173,033...79,380,993
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MEGF8
multiple EGF like domains 8
acts_upstream_of_or_within
ISO
(PMID:32203821)
MGI
PMID:32203821
NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
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MKS1
MKS transition zone complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:34,499,139...34,512,191
Ensembl chr12:34,499,142...34,512,187
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MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
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MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
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MYCN
MYCN proto-oncogene, bHLH transcription factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:121,543,201...121,549,678
Ensembl chr 3:121,543,109...121,549,046
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NOG
noggin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
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OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
G
PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
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RAB23
RAB23, member RAS oncogene family
acts_upstream_of_or_within
ISO
(PMID:15755804), (PMID:9636176)
MGI
PMID:9636176 PMID:15755804
NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,952
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ROR2
receptor tyrosine kinase like orphan receptor 2
acts_upstream_of_or_within
ISO
(PMID:20660756)
MGI
PMID:20660756
NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296
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SALL1
spalt like transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
G
SFRP2
secreted frizzled related protein 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921
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SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:11044396)
Ensembl Roslin_Institute
PMID:11044396
GO_REF:0000107
NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
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SMAD4
SMAD family member 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,589,850...100,628,029
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TBC1D32
TBC1 domain family member 32
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:41,057,782...41,265,416
Ensembl chr 1:41,057,838...41,265,375
G
TBX2
T-box transcription factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
G
TBX3
T-box transcription factor 3
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
G
TMEM107
transmembrane protein 107
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:53,394,500...53,397,064
Ensembl chr12:53,393,332...53,397,064
G
TMEM231
transmembrane protein 231
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:12,140,317...12,163,894
Ensembl chr 6:12,140,687...12,164,140
G
TRAF3IP1
TRAF3 interacting protein 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
G
TTBK2
tau tubulin kinase 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:128,489,676...128,640,094
Ensembl chr 1:128,489,744...128,635,511
G
TULP3
TUB like protein 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,448...67,238,322
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
G
WDPCP
WD repeat containing planar cell polarity effector
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:78,435,154...78,726,313
Ensembl chr 3:78,268,922...78,856,893
G
WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
G
WNT7A
Wnt family member 7A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
ZBTB16
zinc finger and BTB domain containing 16
ISO
RGD
PMID:19191224
RGD:2312786
NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
G
ALDH1A2
aldehyde dehydrogenase 1 family member A2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
G
ALX3
ALX homeobox 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:110,047,254...110,058,205
Ensembl chr 4:110,047,116...110,057,872
G
ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
G
CACNA1C
calcium voltage-gated channel subunit alpha1 C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:69,016,954...69,448,428
Ensembl chr 5:69,275,176...69,454,459
G
CRABP2
cellular retinoic acid binding protein 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
G
CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
G
EN1
engrailed homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,370...24,407,692
G
HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
G
HOXA13
homeobox A13
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,373,340...45,379,046
Ensembl chr18:45,373,440...45,376,325
G
HOXA9
homeobox A9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,404,594...45,411,512
Ensembl chr18:45,408,375...45,411,509
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:22916278)
MGI
PMID:22916278
NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
G
IFT122
intraflagellar transport 122
involved_in
ISO
(PMID:21209331)
BHF-UCL
PMID:21209331
NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,719...68,902,060
G
LNPK
lunapark, ER junction formation factor
acts_upstream_of_or_within
ISO
(PMID:22916278) (PMID:9342042)
MGI
PMID:9342042 PMID:22916278
NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,644...81,805,680
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:18256198) (PMID:15880584) (PMID:11029008) (PMID:19653321)
MGI
PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321
NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
G
MECOM
MDS1 and EVI1 complex locus
acts_upstream_of_or_within
ISO
(PMID:17029558)
MGI
PMID:17029558
NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,482...108,335,702
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
G
NIPBL
NIPBL cohesin loading factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
G
RDH10
retinol dehydrogenase 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
G
RECK
reversion inducing cysteine rich protein with kazal motifs
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:236,821,243...236,898,280
Ensembl chr 1:236,821,414...236,898,276
G
RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
G
RSPO2
R-spondin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:29,415,774...29,577,890
Ensembl chr 4:29,414,752...29,579,674
G
RUNX2
RUNX family transcription factor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
G
SHOX2
SHOX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785
G
TBX3
T-box transcription factor 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
G
TBX5
T-box transcription factor 5
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
G
TFAP2A
transcription factor AP-2 alpha
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,612
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
G
WNT3
Wnt family member 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
G
WNT7A
Wnt family member 7A
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
WNT9A
Wnt family member 9A
acts_upstream_of_or_within
ISO
(PMID:15371327)
MGI
PMID:15371327
NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346
G
AFF3
ALF transcription elongation factor 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,727,885
G
ALX3
ALX homeobox 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:110,047,254...110,058,205
Ensembl chr 4:110,047,116...110,057,872
G
ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:18,070,726...18,085,685
Ensembl chr 2:18,037,401...18,085,683
G
BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
G
CHD7
chromodomain helicase DNA binding protein 7
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:72,572,455...72,754,443
Ensembl chr 4:72,573,453...72,694,146
G
CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
G
DICER1
dicer 1, ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:16319892)
MGI
PMID:16319892
NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224
G
FGF4
fibroblast growth factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874
G
FGF8
fibroblast growth factor 8
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:112,808,215...112,814,225
Ensembl chr14:112,808,162...112,814,248
G
GNAS
GNAS complex locus
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
G
GPC3
glypican 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr X:109,536,495...109,973,605
Ensembl chr X:109,536,504...109,973,607
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:15880584) (PMID:18256198) (PMID:19653321)
MGI
PMID:15880584 PMID:18256198 PMID:19653321
NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
G
MECOM
MDS1 and EVI1 complex locus
acts_upstream_of_or_within
ISO
(PMID:17029558)
MGI
PMID:17029558
NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,482...108,335,702
G
MED1
mediator complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,841,205...22,872,409
G
MMP13
matrix metallopeptidase 13
ISO
RGD
PMID:11850435
RGD:1582550
NCBI chr 9:33,549,003...33,616,700
Ensembl chr 9:33,549,008...33,561,162
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
G
NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
G
PITX1
paired like homeodomain 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18231602)
Ensembl MGI
PMID:18231602
GO_REF:0000107
NCBI chr 2:137,200,424...137,212,500
Ensembl chr 2:137,200,423...137,206,979
G
PITX2
paired like homeodomain 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:111,697,364...111,723,295
Ensembl chr 8:111,698,757...111,723,298
G
RARB
retinoic acid receptor beta
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680
G
RARG
retinoic acid receptor gamma
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624
G
RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190
G
RSPO2
R-spondin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:29,415,774...29,577,890
Ensembl chr 4:29,414,752...29,579,674
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
G
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
(PMID:16192310)
MGI
PMID:16192310
NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295
G
TBX3
T-box transcription factor 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
G
TBX4
T-box transcription factor 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
G
TWIST1
twist family bHLH transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
G
WNT3
Wnt family member 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
ISO IEA
RGD Ensembl
PMID:19191224
GO_REF:0000107 RGD:2312786
NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
G
ACD
ACD shelterin complex subunit and telomerase recruitment factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:28,277,649...28,280,409
Ensembl chr 6:28,277,614...28,280,405
G
ALDH1A2
aldehyde dehydrogenase 1 family member A2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
G
ALX1
ALX homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:96,761,683...96,785,125
Ensembl chr 5:96,763,685...96,785,165
G
BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637
G
BMP7
bone morphogenetic protein 7
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,956...57,675,986
G
C2CD3
C2 domain containing 3 centriole elongation regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:8,393,610...8,512,843
Ensembl chr 9:8,393,612...8,512,848
G
CHST11
carbohydrate sulfotransferase 11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795
G
CYP26B1
cytochrome P450 family 26 subfamily B member 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408
G
DICER1
dicer 1, ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:16040801)
MGI
PMID:16040801
NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224
G
DKK1
dickkopf WNT signaling pathway inhibitor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,288
G
DLX5
distal-less homeobox 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:76,639,915...76,643,689
Ensembl chr 9:76,639,561...76,643,884
G
DLX6
distal-less homeobox 6
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:76,623,489...76,630,296
Ensembl chr 9:76,625,117...76,630,275
G
DYNC2H1
dynein cytoplasmic 2 heavy chain 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:33,720,920...34,039,954
Ensembl chr 9:33,720,877...34,040,188
G
EN1
engrailed homeobox 1
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:7624797)
Ensembl ParkinsonsUK-UCL
PMID:7624797
GO_REF:0000107
NCBI chr15:24,402,605...24,408,377
Ensembl chr15:24,402,370...24,407,692
G
FBN2
fibrillin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,150,667...131,370,466
G
FGF4
fibroblast growth factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874
G
FGF9
fibroblast growth factor 9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408
G
FGFR1
fibroblast growth factor receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724
G
FRAS1
Fraser extracellular matrix complex subunit 1
acts_upstream_of_or_within
ISO
(PMID:23469164)
MGI
PMID:23469164
NCBI chr 8:73,502,368...73,959,454
Ensembl chr 8:73,502,717...73,957,375
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
G
GJA5
gap junction protein alpha 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:99,854,129...99,871,288
Ensembl chr 4:99,854,392...99,871,286
G
GLI3
GLI family zinc finger 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900
G
GREM1
gremlin 1, DAN family BMP antagonist
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,105...136,629,292
G
HNF1A
HNF1 homeobox A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328
G
HOXA10
homeobox A10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,393,525...45,403,259
Ensembl chr18:45,393,885...45,403,257
G
HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953
G
HOXC10
homeobox C10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:19,197,810...19,202,975
Ensembl chr 5:19,197,807...19,202,970
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282
G
HOXD13
homeobox D13
acts_upstream_of_or_within
ISO
(PMID:11850178)
MGI
PMID:11850178
NCBI chr15:81,893,997...81,897,965
Ensembl chr15:81,893,972...81,896,944
G
LEF1
lymphoid enhancer binding factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,825,161...113,944,070
G
LRP4
LDL receptor related protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:15,616,137...15,672,876
Ensembl chr 2:15,616,131...15,672,874
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:20359476)
MGI
PMID:20359476
NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662
G
MBNL1
muscleblind like splicing regulator 1
involved_in
ISO
(PMID:12915312)
UniProt
PMID:12915312
NCBI chr13:92,491,778...92,696,235
Ensembl chr13:92,491,808...92,696,230
G
MEGF8
multiple EGF like domains 8
involved_in
ISO
(PMID:24052814)
UniProt
PMID:24052814
NCBI chr 6:49,572,905...49,619,120
Ensembl chr 6:49,577,403...49,618,921
G
MOSMO
modulator of smoothened
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:24,107,878...24,176,161
Ensembl chr 3:24,107,877...24,176,166
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:19422820) (PMID:15930102)
MGI
PMID:15930102 PMID:19422820
NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
G
MUSTN1
musculoskeletal, embryonic nuclear protein 1
ISO
RGD
PMID:14718386
RGD:1302424
G
NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
NOTCH2
notch receptor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:100,951,522...101,152,348
Ensembl chr 4:100,981,636...101,150,195
G
PBX1
PBX homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:85,824,590...86,170,328
Ensembl chr 4:85,824,666...86,170,191
G
PBX2
PBX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:24,221,565...24,226,940
Ensembl chr 7:24,221,565...24,226,940
G
PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
G
PRRX1
paired related homeobox 1
acts_upstream_of_or_within
ISO
(PMID:9729491), (PMID:9882503)
MGI
PMID:9729491 PMID:9882503
NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,687...80,501,646
G
PRRX2
paired related homeobox 2
acts_upstream_of_or_within
ISO
(PMID:9729491), (PMID:9882503)
MGI
PMID:9729491 PMID:9882503
NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,200...269,903,469
G
PSEN1
presenilin 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,190...96,569,130
G
PSEN2
presenilin 2
acts_upstream_of_or_within
ISO
(PMID:16169548)
MGI
PMID:16169548
NCBI chr10:14,532,556...14,561,862
Ensembl chr10:14,532,767...14,577,251
G
PTCH1
patched 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
G
SALL4
spalt like transcription factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:53,082,610...53,103,023
Ensembl chr17:53,084,310...53,103,190
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
G
SHOX2
SHOX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785
G
SKI
SKI proto-oncogene
acts_upstream_of_or_within
ISO
(PMID:12435627)
MGI
PMID:12435627
NCBI chr 6:64,188,265...64,242,596
Ensembl chr 6:64,188,236...64,242,560
G
SP8
Sp8 transcription factor
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:15358670)
Ensembl UniProt
PMID:15358670
GO_REF:0000107
NCBI chr 9:89,764,671...89,767,428
Ensembl chr 9:89,762,727...89,767,341
G
SP9
Sp9 transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:80,325,449...80,328,111
Ensembl chr15:80,325,377...80,329,020
G
TBX4
T-box transcription factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:36,803,355...36,830,321
Ensembl chr12:36,802,354...36,834,327
G
TBX5
T-box transcription factor 5
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
G
TGFB2
transforming growth factor beta 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,105...127,347,068
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
G
WDR19
WD repeat domain 19
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703
G
WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
ISO
MGI
MGI:61278
NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
G
FZD6
frizzled class receptor 6
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:33,811,159...33,844,556
Ensembl chr 4:33,809,809...33,844,656
G
MSX1
msh homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21465616)
Ensembl MGI
PMID:21465616
GO_REF:0000107
NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789
G
PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:73,707,026...73,826,529
Ensembl chr 5:73,707,050...73,826,430
G
CTNNB1
catenin beta 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929
G
ARK2C
arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:95,951,387...96,072,522
Ensembl chr 1:95,950,746...96,066,928
G
FMN1
formin 1
acts_upstream_of_or_within
ISO
(PMID:17554679)
MGI
PMID:17554679
NCBI chr 1:136,696,353...137,163,532
Ensembl chr 1:136,704,090...137,163,537
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
G
NIPBL
NIPBL cohesin loading factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,469...22,363,821
G
SALL1
spalt like transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
G
SALL3
spalt like transcription factor 3
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 1:146,251,591...146,273,778
Ensembl chr 1:146,252,155...146,273,906
G
TBX3
T-box transcription factor 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,766
G
TBX5
T-box transcription factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:37,772,205...37,826,015
Ensembl chr14:37,774,171...37,825,401
G
TFAP2A
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
(PMID:9811866)
MGI
PMID:9811866
NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,612
G
TFAP2B
transcription factor AP-2 beta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:44,745,653...44,774,563
Ensembl chr 7:44,745,827...44,770,606
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
ISO
MGI
MGI:48652
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
G
ATP7A
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI
MGI:61157
NCBI chr X:61,972,544...62,110,058
Ensembl chr X:61,972,991...62,110,048
G
BMPR1A
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790
G
FMN1
formin 1
acts_upstream_of_or_within
ISO
(PMID:17554679)
MGI
PMID:17554679
NCBI chr 1:136,696,353...137,163,532
Ensembl chr 1:136,704,090...137,163,537
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,911,372...81,921,164
Ensembl chr15:81,917,637...81,921,461
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:81,910,415...81,926,276
Ensembl chr15:81,924,142...81,926,274
G
PITX1
paired like homeodomain 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:137,200,424...137,212,500
Ensembl chr 2:137,200,423...137,206,979
G
PTCH1
patched 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr10:26,627,165...26,703,225
Ensembl chr10:26,627,425...26,703,223
G
SALL1
spalt like transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 6:33,731,666...33,748,698
Ensembl chr 6:33,732,025...33,748,704
G
SALL3
spalt like transcription factor 3
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 1:146,251,591...146,273,778
Ensembl chr 1:146,252,155...146,273,906
G
TFAP2B
transcription factor AP-2 beta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:44,745,653...44,774,563
Ensembl chr 7:44,745,827...44,770,606
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:88,286,911...88,290,131
Ensembl chr 9:88,289,407...88,290,015
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
ISO
MGI
MGI:48652
NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742
G
COL2A1
collagen type II alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718
G
FGF10
fibroblast growth factor 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,470...28,777,509
G
FGFR2
fibroblast growth factor receptor 2
involved_in acts_upstream_of_or_within
ISS ISO
(PMID:10518547) (PMID:9435295)
UniProt MGI
PMID:9435295 PMID:10518547
GO_REF:0000024
NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,713...131,289,425
G
PLXNA2
plexin A2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:134,584,760...134,800,471
Ensembl chr 9:134,584,406...134,796,063
G
SEMA3C
semaphorin 3C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:99,114,649...99,432,683
Ensembl chr 9:99,251,715...99,433,224
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,994...2,555,484
G
SOX9
SRY-box transcription factor 9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
G
WNT3
Wnt family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:17,627,291...17,681,197
Ensembl chr12:17,628,726...17,681,026
G
ZNF219
zinc finger protein 219
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:78,028,560...78,043,491
Ensembl chr 7:78,035,228...78,043,464
G
COL3A1
collagen type III alpha 1 chain
involved_in
ISO
(PMID:31655293)
MGI
PMID:31655293
NCBI chr15:93,556,914...93,595,678
Ensembl chr15:93,526,603...93,596,363
G
ERRFI1
ERBB receptor feedback inhibitor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:68,667,651...68,682,629
Ensembl chr 6:68,669,153...68,682,623
G
EXT1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540
G
LOC100623720
collagen alpha-1(VI) chain
acts_upstream_of_or_within
ISO
(PMID:22448243)
MGI
PMID:22448243
NCBI chr13:208,295,245...208,321,789
Ensembl chr13:208,295,451...208,313,127
G
ATRX
ATRX chromatin remodeler
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr X:61,584,028...61,872,341
Ensembl chr X:61,584,848...61,872,287
G
ENPP1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
(PMID:24770645)
MGI
PMID:24770645
NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595
G
VPS54
VPS54 subunit of GARP complex
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429
G
LARGE1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:24722207)
MGI
PMID:24722207
G
MIR23A
microRNA mir-23a
acts_upstream_of_or_within
ISO
(PMID:24101522)
MGI
PMID:24101522
NCBI chr 2:65,308,117...65,308,186
Ensembl chr 2:65,308,117...65,308,186
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all