Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:limb morphogenesis
go back to main search page
Accession:GO:0035108 term browser browse the term
Definition:The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
Synonyms:narrow_synonym: limb bud morphogenesis

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9374397), (PMID:9847249)
(PMID:9847249)		 MGI PMID:9374397 PMID:9847249 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Asph aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chrNW_004624744:30,190,625...30,420,501
Ensembl chrNW_004624744:30,190,513...30,418,467 		JBrowse link
G Bak1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (PMID:11163212) MGI PMID:11163212 NCBI chrNW_004624754:23,297,077...23,302,366
Ensembl chrNW_004624754:23,296,800...23,301,223 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:11163212) MGI PMID:11163212 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 involved_in ISO (PMID:30395363) UniProt PMID:30395363 NCBI chrNW_004624763:1,180,699...1,201,766 JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:10100048) MGI PMID:10100048 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513 		JBrowse link
G Evx2 even-skipped homeobox 2 acts_upstream_of_or_within ISO (PMID:8978698) MGI PMID:8978698 NCBI chrNW_004624787:13,221,382...13,224,989
Ensembl chrNW_004624787:13,221,382...13,224,978 		JBrowse link
G Fbn2 fibrillin 2 acts_upstream_of_or_within ISO (PMID:10700192) MGI PMID:10700192 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9916808) MGI
Ensembl		 PMID:9916808 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:15328019) MGI PMID:15328019 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:18478223), (PMID:9354785)
(PMID:9268572)		 UniProt
MGI		 PMID:9268572 PMID:9354785 PMID:18478223 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11543619)
(PMID:8978698)		 MGI PMID:8978698 PMID:11543619 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:9097952) MGI PMID:9097952 NCBI chrNW_004624755:26,151,302...26,169,324
Ensembl chrNW_004624755:26,154,186...26,169,365 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:24009529) MGI PMID:24009529 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Iqce IQ motif containing E involved_in ISO (PMID:28488682) UniProt PMID:28488682 NCBI chrNW_004624740:30,299,266...30,348,572 JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:20589901) MGI PMID:20589901 NCBI chrNW_004624760:8,701,204...8,772,147
Ensembl chrNW_004624760:8,698,139...8,772,147 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15537447) MGI PMID:15537447 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15537447)
(PMID:15469977)		 MGI PMID:15469977 PMID:15537447 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Nfia nuclear factor I A involved_in ISO (PMID:29247144) MGI PMID:29247144 NCBI chrNW_004624742:31,895,791...32,198,156
Ensembl chrNW_004624742:31,898,892...32,189,295 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624868:4,974,690...4,993,886
Ensembl chrNW_004624868:4,974,810...4,993,817 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic acts_upstream_of_or_within ISO (PMID:21553379) MGI PMID:21553379 NCBI chrNW_004624738:23,759,382...23,768,743
Ensembl chrNW_004624738:23,759,398...23,771,639 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379) BHF-UCL PMID:8681379 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO (PMID:22318228) MGI PMID:22318228 NCBI chrNW_004624784:12,259,476...12,547,650
Ensembl chrNW_004624784:12,260,564...12,547,764 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in		 ISO (PMID:12668638)
(PMID:27046536)		 MGI PMID:12668638 PMID:27046536 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:15106123)
(PMID:15621531)		 UniProt
MGI		 PMID:15106123 PMID:15621531 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO (PMID:24141020) MGI PMID:24141020 NCBI chrNW_004624762:9,457,283...9,570,311
Ensembl chrNW_004624762:9,457,705...9,563,779 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:22234993) MGI PMID:22234993 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:15967824) MGI PMID:15967824 NCBI chrNW_004624749:1,033,824...1,130,099
Ensembl chrNW_004624749:1,091,096...1,125,341 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:9268572)		 MGI PMID:9268572 PMID:9272948 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G B9d1 B9 domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22179047) Ensembl
MGI		 PMID:22179047 GO_REF:0000107 NCBI chrNW_004624849:5,635,996...5,644,139
Ensembl chrNW_004624849:5,633,076...5,644,221 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:20043884) MGI PMID:20043884 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18539921) Ensembl
MGI		 PMID:18539921 GO_REF:0000107 NCBI chrNW_004624886:2,983,077...3,005,596
Ensembl chrNW_004624886:2,983,121...3,005,596 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (PMID:25877302) MGI PMID:25877302 NCBI chrNW_004624759:17,763,200...17,879,603
Ensembl chrNW_004624759:17,763,585...17,855,954 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20043884)
(PMID:12923052)		 Ensembl
MGI		 PMID:12923052 PMID:20043884 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chrNW_004624764:6,222,301...6,318,423
Ensembl chrNW_004624764:6,221,867...6,318,477 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:10471509)
(PMID:9733575)		 MGI PMID:9733575 PMID:10471509 NCBI chrNW_004624831:1,107,689...1,183,839
Ensembl chrNW_004624831:1,107,689...1,183,958 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO (PMID:18258918) MGI PMID:18258918 NCBI chrNW_004624771:18,239,437...18,270,408 JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chrNW_004624920:1,683,342...1,908,602
Ensembl chrNW_004624920:1,683,351...1,904,557 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27158779)
(PMID:19877275)		 MGI PMID:19877275 PMID:27158779 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:19439426) MGI PMID:19439426 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:19056373) MGI PMID:19056373 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:22841643)
(PMID:17714700)
(PMID:16254602), (PMID:19036983), (PMID:9268572)
(PMID:9268572)		 MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12077299) Ensembl
MGI		 PMID:12077299 GO_REF:0000107 NCBI chrNW_004624811:5,158,665...5,485,812
Ensembl chrNW_004624811:5,163,793...5,486,140 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004624763:18,784,815...18,916,358
Ensembl chrNW_004624763:18,784,187...18,916,358 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:12070084) MGI PMID:12070084 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chrNW_004624764:15,510,655...15,552,020
Ensembl chrNW_004624764:15,510,866...15,552,025 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148 		JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:17714700 NCBI chrNW_004624787:13,240,767...13,241,766
Ensembl chrNW_004624787:13,240,813...13,241,766 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:8900279)
(PMID:17714700)		 MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15930098)
(PMID:12701101), (PMID:16254602)
(PMID:19036983)
(PMID:15755804), (PMID:15930098)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20660756) Ensembl
MGI		 PMID:20660756 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:25774014)		 GO_Central
MGI		 PMID:25774014 PMID:27158779 NCBI chrNW_004624777:8,585,777...8,674,887
Ensembl chrNW_004624777:8,596,178...8,675,295 		JBrowse link
G Lmbr1 limb development membrane protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11606546) MGI
Ensembl		 PMID:11606546 GO_REF:0000107 NCBI chrNW_004624800:1,494,183...1,648,978
Ensembl chrNW_004624800:1,494,192...1,648,978 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042) MGI PMID:9342042 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:16517118) MGI PMID:16517118 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15142971)		 MGI PMID:15142971 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:26755636) UniProt PMID:26755636 NCBI chrNW_004624787:10,392,738...10,566,563
Ensembl chrNW_004624787:10,405,701...10,565,943 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:32203821) MGI PMID:32203821 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:19776033)
(PMID:21045211)
(PMID:23454480)		 MGI PMID:19776033 PMID:21045211 PMID:23454480 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21465616) MGI
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004624865:780,163...785,776 JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) BHF-UCL PMID:10080184 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18470945)
(PMID:18280297)		 UniProt PMID:18280297 PMID:18470945 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18729207) Ensembl
MGI		 PMID:18729207 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO (PMID:17504940), (PMID:17504941)
(PMID:15930098)
(PMID:20660756)
(PMID:11044396)		 MGI
Roslin_Institute		 PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) BHF-UCL PMID:15459098 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:27046536)
(PMID:12116211), (PMID:9207801)
(PMID:23844108)		 MGI
UniProt		 PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) UniProt PMID:22698544 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004624746:11,411,050...11,427,945
Ensembl chrNW_004624746:11,411,107...11,427,943 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287) MGI PMID:19286674 PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO (PMID:27158779)
(PMID:24302887)		 GO_Central
MGI		 PMID:24302887 PMID:27158779 NCBI chrNW_004624762:9,901,021...10,303,217
Ensembl chrNW_004624762:9,970,904...10,303,046 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15069081), (PMID:20034106) MGI PMID:15069081 PMID:20034106 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:7720575) MGI PMID:7720575 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371327) Ensembl
MGI		 PMID:15371327 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxa13 homeobox A13 acts_upstream_of_or_within ISO (PMID:15733672) MGI PMID:15733672 NCBI chrNW_004624739:3,405,860...3,410,426
Ensembl chrNW_004624739:3,406,436...3,410,851 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:8625797) MGI PMID:8625797 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:9342042)
(PMID:22916278)		 MGI PMID:9342042 PMID:22916278 NCBI chrNW_004624787:13,049,079...13,127,052
Ensembl chrNW_004624787:13,048,690...13,120,751 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008)
(PMID:19653321)
(PMID:18256198)
(PMID:15880584)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:23213437) MGI PMID:23213437 NCBI chrNW_004624868:4,604,157...4,713,838
Ensembl chrNW_004624868:4,603,955...4,713,652 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004624763:23,067,682...23,182,945
Ensembl chrNW_004624763:23,067,691...23,182,059 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624754:14,601,574...14,868,469
Ensembl chrNW_004624754:14,679,974...14,867,729 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883), (PMID:11476582) MGI PMID:11118883 PMID:11476582 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11572777), (PMID:12490567) Ensembl
MGI		 PMID:11572777 PMID:12490567 GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:9811866) UniProt PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Tp63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25503409) Ensembl
MGI		 PMID:25503409 GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12175489) MGI PMID:12175489 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within
involved_in		 ISO (PMID:15880584)
(PMID:9362463)
(PMID:16826533)		 MGI
BHF-UCL		 PMID:9362463 PMID:15880584 PMID:16826533 MGI:48652 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chrNW_004624937:776,810...797,365
Ensembl chrNW_004624937:776,810...797,310 		JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff3 ALF transcription elongation factor 3 involved_in ISO (PMID:18616733) BHF-UCL PMID:18616733 NCBI chrNW_004624749:4,494,740...5,015,118
Ensembl chrNW_004624749:4,498,621...4,773,900 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:16207732) MGI PMID:16207732 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18231602)
(PMID:12923052)		 Ensembl
MGI		 PMID:12923052 PMID:18231602 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16319892) MGI PMID:16319892 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004624767:17,381,387...17,385,698
Ensembl chrNW_004624767:17,381,791...17,383,468 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chrNW_004624741:25,138,678...25,197,194
Ensembl chrNW_004624741:25,183,329...25,196,880 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624797:13,234,741...13,678,542
Ensembl chrNW_004624797:13,230,932...13,678,742 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198)
(PMID:15880584)
(PMID:19653321)		 MGI PMID:15880584 PMID:18256198 PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004624795:3,572,025...3,605,675
Ensembl chrNW_004624795:3,572,266...3,607,126 		JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chrNW_004624918:2,228,688...2,239,852 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21465616) MGI
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16245338) MGI PMID:16245338 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
G Pitx1 paired like homeodomain 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:18231602)
(PMID:22071103)		 MGI
CACAO		 PMID:18231602 PMID:22071103 NCBI chrNW_004624733:12,028,497...12,034,612
Ensembl chrNW_004624733:12,029,298...12,034,413 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:18231602) MGI PMID:18231602 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:10075839) MGI PMID:10075839 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:10075839) MGI PMID:10075839 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chrNW_004624763:23,067,682...23,182,945
Ensembl chrNW_004624763:23,067,691...23,182,059 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883) MGI PMID:11118883 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16192310) MGI PMID:16192310 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:23844108) MGI PMID:23844108 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:31761294) UniProt PMID:31761294 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25503409) MGI
Ensembl		 PMID:25503409 GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988167) BHF-UCL PMID:8988167 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 ISO (PMID:16826533)
(PMID:15880584)		 BHF-UCL
MGI		 PMID:15880584 PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10835630) RGD
MGI
Ensembl		 PMID:10835630 PMID:19191224 GO_REF:0000107 RGD:2312786 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (PMID:15537664) MGI PMID:15537664 NCBI chrNW_004624746:18,688,898...18,692,216
Ensembl chrNW_004624746:18,689,364...18,695,944 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:14623241) MGI PMID:14623241 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:9664686) MGI PMID:9664686 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chrNW_004624750:4,227,229...4,391,177
Ensembl chrNW_004624750:4,223,561...4,391,218 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16040801) MGI PMID:16040801 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15242796) Ensembl
MGI		 PMID:15242796 GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12112878)
(PMID:18326838)		 Ensembl
MGI		 PMID:12112878 PMID:18326838 GO_REF:0000107 NCBI chrNW_004624813:3,760,890...3,765,309
Ensembl chrNW_004624813:3,760,661...3,765,517 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO (PMID:18326838)
(PMID:12112878)		 MGI PMID:12112878 PMID:18326838 NCBI chrNW_004624813:3,746,040...3,751,542
Ensembl chrNW_004624813:3,746,046...3,752,905 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:16229832) MGI PMID:16229832 NCBI chrNW_004624918:1,730,675...2,071,231
Ensembl chrNW_004624918:1,730,708...2,071,072 		JBrowse link
G En1 engrailed homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:7624797)
(PMID:8684466)
(PMID:15242796)		 ParkinsonsUK-UCL
MGI		 PMID:7624797 PMID:8684466 PMID:15242796 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Fbn2 fibrillin 2 acts_upstream_of_or_within ISO (PMID:11285249)
(PMID:11350121)		 MGI PMID:11285249 PMID:11350121 NCBI chrNW_004624774:12,863,446...13,116,929
Ensembl chrNW_004624774:12,863,446...13,116,545 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:15328019) MGI PMID:15328019 NCBI chrNW_004624767:17,381,387...17,385,698
Ensembl chrNW_004624767:17,381,791...17,383,468 		JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17576930) Ensembl
MGI		 PMID:17576930 GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:16207751) MGI PMID:16207751 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004624757:12,529,475...12,973,751
Ensembl chrNW_004624757:12,532,466...12,972,918 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO (PMID:15542031) MGI PMID:15542031 NCBI chrNW_004624842:3,958,814...3,963,713
Ensembl chrNW_004624842:3,959,617...3,963,020 		JBrowse link
G Gja5 gap junction protein alpha 5 acts_upstream_of_or_within ISO (PMID:15923624) MGI PMID:15923624 NCBI chrNW_004624772:16,810,723...16,828,328
Ensembl chrNW_004624772:16,813,011...16,814,084 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:12142027), (PMID:12435361), (PMID:12435627), (PMID:19809516), (PMID:8387379)
(PMID:19422820)
(PMID:16284117)		 MGI PMID:8387379 PMID:12142027 PMID:12435361 PMID:12435627 PMID:16284117 More... NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12808456) Ensembl
MGI		 PMID:12808456 GO_REF:0000107 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,425,468...3,435,218
Ensembl chrNW_004624739:3,425,468...3,433,967 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxc10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chrNW_004624904:2,040,018...2,044,881
Ensembl chrNW_004624904:2,039,754...2,045,096 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11850178) MGI PMID:11850178 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G LOC101714280 cytochrome P450 26B1 acts_upstream_of_or_within ISO (PMID:15030763) MGI PMID:15030763 NCBI chrNW_004624762:1,455,828...1,474,201
Ensembl chrNW_004624762:1,456,440...1,472,381 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:17119023)
(PMID:16207730)		 MGI PMID:16207730 PMID:17119023 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:20359476) MGI PMID:20359476 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO (PMID:12915312) UniProt PMID:12915312 NCBI chrNW_004624730:29,930,292...30,112,145
Ensembl chrNW_004624730:29,959,580...30,113,245 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO (PMID:34486668) MGI PMID:34486668 NCBI chrNW_004624782:7,455,770...7,513,931 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:15930102)
(PMID:19422820)		 MGI PMID:15930102 PMID:19422820 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19422820)
(PMID:15930102)		 Ensembl
MGI		 PMID:15930102 PMID:19422820 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 ISO RGD PMID:14718386 RGD:1302424 NCBI chrNW_004624822:4,388,562...4,395,494
Ensembl chrNW_004624822:4,390,682...4,395,494 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:16672333) MGI PMID:16672333 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110 		JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO (PMID:16672333) MGI PMID:16672333 NCBI chrNW_004624754:24,132,886...24,137,699 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chrNW_004624826:8,361,039...8,435,488
Ensembl chrNW_004624826:8,361,033...8,435,656 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chrNW_004624760:5,656,456...5,684,383
Ensembl chrNW_004624760:5,656,521...5,692,934 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:11784021)
(PMID:11389830)		 MGI PMID:11389830 PMID:11784021 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Sall4 spalt like transcription factor 4 acts_upstream_of_or_within ISO (PMID:16380715) MGI PMID:16380715 NCBI chrNW_004624790:4,153,157...4,170,813
Ensembl chrNW_004624790:4,162,454...4,170,923 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11389830)
(PMID:19422820)
(PMID:15315763)		 MGI PMID:11389830 PMID:15315763 PMID:19422820 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:17481601)
(PMID:16537395)		 MGI PMID:16537395 PMID:17481601 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:12435627) MGI PMID:12435627 NCBI chrNW_004624818:7,674,184...7,736,249
Ensembl chrNW_004624818:7,673,203...7,736,255 		JBrowse link
G Sp8 Sp8 transcription factor involved_in
acts_upstream_of_or_within		 ISO (PMID:15358670)
(PMID:14597661)		 UniProt
MGI		 PMID:14597661 PMID:15358670 NCBI chrNW_004624739:9,792,963...9,795,697
Ensembl chrNW_004624739:9,793,290...9,795,684 		JBrowse link
G Sp9 Sp9 transcription factor involved_in ISO (PMID:15358670) UniProt PMID:15358670 NCBI chrNW_004624787:11,576,707...11,579,871
Ensembl chrNW_004624787:11,576,717...11,579,977 		JBrowse link
G Tbx4 T-box transcription factor 4 acts_upstream_of_or_within ISO (PMID:12736212) MGI PMID:12736212 NCBI chrNW_004624871:2,365,836...2,390,269
Ensembl chrNW_004624871:2,366,823...2,390,269 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12736217)
(PMID:16380715)		 Ensembl
MGI		 PMID:12736217 PMID:16380715 GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:9217007) BHF-UCL PMID:9217007 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
G Tp63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10227293)
(PMID:18326838)		 Ensembl
MGI		 PMID:10227293 PMID:18326838 GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764)
(PMID:11350121)
(PMID:12142027)		 MGI PMID:11350121 PMID:12142027 PMID:15030764 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:10021340) MGI PMID:10021340 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (PMID:15242796) MGI PMID:15242796 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI MGI:61278 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO (PMID:23439395) MGI PMID:23439395 NCBI chrNW_004624763:19,861,837...19,888,626 JBrowse link
G Msx1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11369996)
(PMID:21465616)		 BHF-UCL
MGI		 PMID:11369996 PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21465616) MGI
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:21262216) BHF-UCL PMID:21262216 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:6,035,923...6,043,682
Ensembl chrNW_004624763:6,035,953...6,043,437 		JBrowse link
forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within ISO (PMID:23610558) MGI PMID:23610558 NCBI chrNW_004624778:9,982,923...10,089,204
Ensembl chrNW_004624778:9,982,936...10,086,937 		JBrowse link
G Fmn1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chrNW_004624804:1,124,322...1,558,781
Ensembl chrNW_004624804:1,155,071...1,558,145 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO (PMID:8145850) MGI PMID:8145850 NCBI chrNW_004624842:3,958,814...3,963,713
Ensembl chrNW_004624842:3,959,617...3,963,020 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:10642795) MGI PMID:10642795 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:10642795) MGI PMID:10642795 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sall3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chrNW_004624806:1,432,771...1,454,794
Ensembl chrNW_004624806:1,435,617...1,454,779 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:9207801) MGI PMID:9207801 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15621531)
(PMID:8988164), (PMID:8988165)		 Ensembl
MGI		 PMID:8988164 PMID:8988165 PMID:15621531 GO_REF:0000107 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:21829553) UniProt PMID:21829553 NCBI chrNW_004624855:5,353,347...5,381,454
Ensembl chrNW_004624855:5,355,239...5,381,477 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI MGI:61157 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16556916) MGI PMID:16556916 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Fmn1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chrNW_004624804:1,124,322...1,558,781
Ensembl chrNW_004624804:1,155,071...1,558,145 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO (PMID:17085896)
(PMID:8145850)		 MGI PMID:8145850 PMID:17085896 NCBI chrNW_004624842:3,958,814...3,963,713
Ensembl chrNW_004624842:3,959,617...3,963,020 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:10642795) MGI PMID:10642795 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within ISO (PMID:10642795) MGI PMID:10642795 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G Pitx1 paired like homeodomain 1 acts_upstream_of_or_within ISO (PMID:10049363)
(PMID:15621531), (PMID:16989801)
(PMID:10101115)		 MGI PMID:10049363 PMID:10101115 PMID:15621531 PMID:16989801 NCBI chrNW_004624733:12,028,497...12,034,612
Ensembl chrNW_004624733:12,029,298...12,034,413 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sall3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chrNW_004624806:1,432,771...1,454,794
Ensembl chrNW_004624806:1,435,617...1,454,779 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:21829553) UniProt PMID:21829553 NCBI chrNW_004624855:5,353,347...5,381,454
Ensembl chrNW_004624855:5,355,239...5,381,477 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:10700192) MGI PMID:10700192 NCBI chrNW_004624739:11,352,040...11,354,019
Ensembl chrNW_004624739:11,352,141...11,352,809 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10835630) MGI
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
limb bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain involved_in ISO (PMID:20940257) UniProt PMID:20940257 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784490) Ensembl
MGI		 PMID:9784490 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:9435295)
(PMID:10518547)		 MGI PMID:9435295 PMID:10518547 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624739:29,484,557...29,642,981
Ensembl chrNW_004624739:29,484,461...29,626,619 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883) MGI PMID:11118883 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:20940257) UniProt PMID:20940257 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Znf219 zinc finger protein 219 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:7,084,757...7,098,942
Ensembl chrNW_004624825:7,084,757...7,090,725 		JBrowse link
limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22448243) Ensembl
MGI		 PMID:22448243 GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within ISO (PMID:24550287) MGI PMID:24550287 NCBI chrNW_004624818:3,868,089...3,882,960
Ensembl chrNW_004624818:3,868,814...3,882,960 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:20404326) MGI PMID:20404326 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
post-embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:24770645) MGI PMID:24770645 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO (PMID:11403940) MGI PMID:11403940 NCBI chrNW_004624762:9,457,283...9,570,311
Ensembl chrNW_004624762:9,457,705...9,563,779 		JBrowse link
post-embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:24722207) MGI PMID:24722207 NCBI chrNW_004624750:1,190,712...1,524,051
Ensembl chrNW_004624750:1,286,336...1,527,159 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17653
    developmental process 6427
      anatomical structure morphogenesis 2793
        appendage morphogenesis 176
          limb morphogenesis 176
            embryonic limb morphogenesis + 143
            forelimb morphogenesis + 44
            hindlimb morphogenesis + 45
            limb bud formation + 8
            limb joint morphogenesis + 7
            post-embryonic limb morphogenesis + 3
Path 2
Term Annotations click to browse term
  biological_process 17653
    developmental process 6427
      anatomical structure development 6010
        multicellular organism development 4841
          appendage development 212
            appendage morphogenesis 176
              limb morphogenesis 176
                embryonic limb morphogenesis + 143
                forelimb morphogenesis + 44
                hindlimb morphogenesis + 45
                limb bud formation + 8
                limb joint morphogenesis + 7
                post-embryonic limb morphogenesis + 3
paths to the root