ONTOLOGY REPORT - ANNOTATIONS
Term: limb morphogenesis
Accession: GO:0035108
browse the term
Definition: The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
Synonyms: narrow_synonym: limb bud morphogenesis
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ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
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ASPH
aspartate beta-hydroxylase
acts_upstream_of_or_within
ISO
(PMID:11773073)
MGI
PMID:11773073
NCBI chr29:11,812,275...12,022,755
Ensembl chr29:11,814,554...12,022,680
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BAK1
BCL2 antagonist/killer 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:2,950,359...2,957,604
Ensembl chr12:2,948,364...2,957,018
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BAX
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
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CIBAR1
CBY1 interacting BAR domain containing 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:38,604,389...38,630,482
Ensembl chr29:38,603,965...38,630,171
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COL2A1
collagen type II alpha 1 chain
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
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DIP2A
disco interacting protein 2 homolog A
acts_upstream_of_or_within
ISO
(PMID:20096683)
MGI
PMID:20096683
NCBI chr31:39,695,620...39,778,527
Ensembl chr31:39,686,465...39,777,484
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EVX2
even-skipped homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,887,095...19,891,772
Ensembl chr36:19,887,524...19,891,247
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FBN2
fibrillin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
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FGF10
fibroblast growth factor 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
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FGF8
fibroblast growth factor 8
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
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FLVCR1
FLVCR choline and heme transporter 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980
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GLI3
GLI family zinc finger 3
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
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HOXD13
homeobox D13
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,901,184...19,903,837
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IDUA
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
(PMID:9097952)
MGI
PMID:9097952
NCBI chr 3:91,517,225...91,534,593
Ensembl chr 3:91,522,035...91,534,593
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IFT140
intraflagellar transport 140
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
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IQCE
IQ motif containing E
involved_in
ISO
(PMID:28488682)
UniProt
PMID:28488682
NCBI chr 6:14,538,693...14,579,095
Ensembl chr 6:14,532,181...14,577,435
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LMX1B
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
(PMID:20589901)
MGI
PMID:20589901
NCBI chr 9:56,542,844...56,625,609
Ensembl chr 9:56,542,826...56,625,530
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LRP5
LDL receptor related protein 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
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LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:15537447) (PMID:15469977)
MGI
PMID:15469977 PMID:15537447
NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
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MEGF8
multiple EGF like domains 8
involved_in
ISO
(PMID:23063620)
UniProt
PMID:23063620
NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
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NFIA
nuclear factor I A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:48,489,521...49,064,867
Ensembl chr 5:48,496,773...49,064,848
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NPR2
natriuretic peptide receptor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:52,283,680...52,339,247
Ensembl chr11:52,321,590...52,339,249
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PCSK5
proprotein convertase subtilisin/kexin type 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:82,088,090...82,506,131
Ensembl chr 1:82,090,664...82,555,145
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PKDCC
protein kinase domain containing, cytoplasmic
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892
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PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:11,327,086...11,437,799
Ensembl chr27:11,426,647...11,437,303
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PTCH1
patched 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
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RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
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SIK3
SIK family kinase 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:16,623,756...16,733,259
Ensembl chr 5:16,527,504...16,733,243
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TBX3
T-box transcription factor 3
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:27046536)
Ensembl MGI
PMID:27046536
GO_REF:0000107
NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
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TBX4
T-box transcription factor 4
involved_in acts_upstream_of_or_within
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
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VPS54
VPS54 subunit of GARP complex
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:63,598,373...63,676,753
Ensembl chr10:63,599,229...63,676,747
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WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
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ZIC3
Zic family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:107,822,002...107,833,582
Ensembl chr X:107,821,948...107,833,597
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BAX
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
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BCL2L11
BCL2 like 11
acts_upstream_of_or_within
ISO
(PMID:15967824)
MGI
PMID:15967824
NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
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NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
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ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
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B9D1
B9 domain containing 1
acts_upstream_of_or_within
ISO
(PMID:22179047)
MGI
PMID:22179047
NCBI chr 5:40,854,110...40,866,828
Ensembl chr 5:40,854,127...40,866,824
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BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
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BMPR1A
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
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BPNT2
3'(2'), 5'-bisphosphate nucleotidase 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr29:8,176,977...8,215,561
Ensembl chr29:8,182,508...8,215,868
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C2CD3
C2 domain containing 3 centriole elongation regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr21:24,127,390...24,272,473
Ensembl chr21:24,127,598...24,272,657
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CHST11
carbohydrate sulfotransferase 11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
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CPLANE1
ciliogenesis and planar polarity effector complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:71,435,994...71,567,567
Ensembl chr 4:71,430,575...71,567,267
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CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
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ECE1
endothelin converting enzyme 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:77,732,645...77,793,950
Ensembl chr 2:77,678,686...77,792,114
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FBXW4
F-box and WD repeat domain containing 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr28:14,219,724...14,336,846
Ensembl chr28:14,219,893...14,301,924
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FLVCR1
FLVCR choline and heme transporter 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980
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FREM2
FRAS1 related extracellular matrix 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456
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FUZ
fuzzy planar cell polarity protein
acts_upstream_of_or_within
ISO
(PMID:19877275) (PMID:27158779)
MGI
PMID:19877275 PMID:27158779
NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699
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GAS1
growth arrest specific 1
acts_upstream_of_or_within
ISO
(PMID:17504940), (PMID:17504941)
MGI
PMID:17504940 PMID:17504941
NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
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GJA1
gap junction protein alpha 1
acts_upstream_of_or_within
ISO
(PMID:19439426)
MGI
PMID:19439426
NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
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GLI2
GLI family zinc finger 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
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GLI3
GLI family zinc finger 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
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GNA12
G protein subunit alpha 12
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:14,375,144...14,476,018
Ensembl chr 6:14,413,576...14,473,764
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GNAQ
G protein subunit alpha q
acts_upstream_of_or_within
ISO
(PMID:12077299)
MGI
PMID:12077299
NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
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GRHL2
grainyhead like transcription factor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
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HAND2
heart and neural crest derivatives expressed 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr25:24,140,496...24,143,143
Ensembl chr25:24,141,243...24,152,958
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HDAC1
histone deacetylase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
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HDAC2
histone deacetylase 2
involved_in
ISO
(PMID:21093383)
BHF-UCL
PMID:21093383
NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578
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HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
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HOXC11
homeobox C11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr27:1,287,326...1,289,577
Ensembl chr27:1,287,380...1,289,372
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HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:12869760) (PMID:17714700) (PMID:8900279)
MGI
PMID:8900279 PMID:12869760 PMID:17714700
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
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HOXD12
homeobox D12
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,907,424...19,910,827
Ensembl chr36:19,907,442...19,908,408
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HOXD13
homeobox D13
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,901,184...19,903,837
G
IFT122
intraflagellar transport 122
acts_upstream_of_or_within
ISO
(PMID:15755804)
MGI
PMID:15755804
NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
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IFT140
intraflagellar transport 140
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
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IFT52
intraflagellar transport 52
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808
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IFT88
intraflagellar transport 88
acts_upstream_of_or_within
ISO
(PMID:19036983) (PMID:12701101), (PMID:16254602) (PMID:15755804), (PMID:15930098) (PMID:15930098)
MGI
PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983
NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
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IHH
Indian hedgehog signaling molecule
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:17889828)
Ensembl AgBase
PMID:17889828
GO_REF:0000107
NCBI chr37:25,616,942...25,622,989
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INTU
inturned planar cell polarity protein
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496
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LMBR1
limb development membrane protein 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:19,295,235...19,442,390
Ensembl chr16:19,296,149...19,442,369
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LNPK
lunapark, ER junction formation factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
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LRP4
LDL receptor related protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
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LRP5
LDL receptor related protein 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
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LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:19795512) (PMID:15142971)
MGI
PMID:15142971 PMID:19795512
NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
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MAP3K20
mitogen-activated protein kinase kinase kinase 20
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:17,353,829...17,515,247
Ensembl chr36:17,341,300...17,514,869
G
MEGF8
multiple EGF like domains 8
acts_upstream_of_or_within
ISO
(PMID:32203821)
MGI
PMID:32203821
NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
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MKS1
MKS transition zone complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
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MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
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MYCN
MYCN proto-oncogene, bHLH transcription factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:11,720,857...11,724,308
G
NOG
noggin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:31,453,604...31,456,060
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
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PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:11,327,086...11,437,799
Ensembl chr27:11,426,647...11,437,303
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RAB23
RAB23, member RAS oncogene family
acts_upstream_of_or_within
ISO
(PMID:15755804), (PMID:9636176)
MGI
PMID:9636176 PMID:15755804
NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
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ROR2
receptor tyrosine kinase like orphan receptor 2
acts_upstream_of_or_within
ISO
(PMID:20660756)
MGI
PMID:20660756
NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
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SALL1
spalt like transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
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SFRP2
secreted frizzled related protein 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
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SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:11044396)
Ensembl Roslin_Institute
PMID:11044396
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
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SMAD4
SMAD family member 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
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TBC1D32
TBC1 domain family member 32
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:60,662,704...60,873,881
Ensembl chr 1:60,667,721...60,873,614
G
TBX2
T-box transcription factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
G
TBX3
T-box transcription factor 3
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
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TMEM107
transmembrane protein 107
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:32,991,000...32,993,319
Ensembl chr 5:32,991,021...32,993,248
G
TMEM231
transmembrane protein 231
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:75,246,043...75,266,705
Ensembl chr 5:75,246,043...75,265,021
G
TRAF3IP1
TRAF3 interacting protein 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
G
TTBK2
tau tubulin kinase 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr30:9,674,911...9,844,860
Ensembl chr30:9,676,828...9,844,838
G
TULP3
TUB like protein 3
acts_upstream_of_or_within
ISO
(PMID:19286674), (PMID:19334287)
MGI
PMID:19286674 PMID:19334287
NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
UCP3
uncoupling protein 3
acts_upstream_of_or_within
ISO
(PMID:19004860)
MGI
PMID:19004860
NCBI chr21:24,272,522...24,290,304
Ensembl chr21:24,277,896...24,288,639
G
WDPCP
WD repeat containing planar cell polarity effector
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
G
WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
G
WNT7A
Wnt family member 7A
involved_in
ISO
(PMID:16826533)
BHF-UCL
PMID:16826533
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
ZBTB16
zinc finger and BTB domain containing 16
ISO
RGD
PMID:19191224
RGD:2312786
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
ALDH1A2
aldehyde dehydrogenase 1 family member A2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
G
ALX3
ALX homeobox 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
G
ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
G
CACNA1C
calcium voltage-gated channel subunit alpha1 C
involved_in
ISO
(PMID:15454078)
BHF-UCL
PMID:15454078
NCBI chr27:44,007,363...44,748,251
Ensembl chr27:44,008,020...44,746,429
G
CRABP2
cellular retinoic acid binding protein 2
acts_upstream_of_or_within
ISO
(PMID:7720575)
MGI
PMID:7720575
NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833
G
CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
G
EN1
engrailed homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr19:31,124,325...31,129,538
G
GLIPR2
GLI pathogenesis related 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:52,622,460...52,634,602
Ensembl chr11:52,615,039...52,681,270
G
HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXA13
homeobox A13
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980
G
HOXA9
homeobox A9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,336,829...40,340,533
Ensembl chr14:40,337,999...40,339,923
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:22916278)
MGI
PMID:22916278
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,929,479...19,932,861
G
IFT122
intraflagellar transport 122
involved_in
ISO
(PMID:21209331)
BHF-UCL
PMID:21209331
NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
G
LNPK
lunapark, ER junction formation factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:11029008) (PMID:18256198) (PMID:19653321) (PMID:15880584)
MGI
PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321
NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
G
MECOM
MDS1 and EVI1 complex locus
acts_upstream_of_or_within
ISO
(PMID:17029558)
MGI
PMID:17029558
NCBI chr34:33,747,495...34,299,389
Ensembl chr34:33,748,843...34,299,276
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
G
NIPBL
NIPBL cohesin loading factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
G
RDH10
retinol dehydrogenase 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
G
RECK
reversion inducing cysteine rich protein with kazal motifs
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:52,519,303...52,607,753
Ensembl chr11:52,519,317...52,607,217
G
RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
G
RSPO2
R-spondin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859
G
RUNX2
RUNX family transcription factor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785 Ensembl chr12:13,628,539...13,840,785
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
G
SHOX2
SHOX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
G
TBX3
T-box transcription factor 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
G
TBX5
T-box transcription factor 5
involved_in acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
G
TFAP2A
transcription factor AP-2 alpha
involved_in
ISO
(PMID:9811866)
UniProt
PMID:9811866
NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
WNT3
Wnt family member 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within involved_in
ISO
(PMID:9362463) (PMID:15880584) (PMID:16826533)
MGI BHF-UCL
PMID:9362463 PMID:15880584 PMID:16826533
MGI:48652
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
WNT9A
Wnt family member 9A
acts_upstream_of_or_within
ISO
(PMID:15371327)
MGI
PMID:15371327
NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295
G
AFF3
ALF transcription elongation factor 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:42,587,173...43,111,739
Ensembl chr10:42,586,394...43,247,328
G
ALX3
ALX homeobox 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
G
ALX4
ALX homeobox 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
G
BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
G
CHD7
chromodomain helicase DNA binding protein 7
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
G
CTNNB1
catenin beta 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
G
DICER1
dicer 1, ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:16319892)
MGI
PMID:16319892
NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
G
FGF4
fibroblast growth factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977
G
FGF8
fibroblast growth factor 8
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
G
GNAS
GNAS complex locus
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657
G
GPC3
glypican 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr X:104,313,426...104,751,215
Ensembl chr X:104,313,591...104,751,756
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:15880584) (PMID:18256198) (PMID:19653321)
MGI
PMID:15880584 PMID:18256198 PMID:19653321
NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
G
MECOM
MDS1 and EVI1 complex locus
acts_upstream_of_or_within
ISO
(PMID:17029558)
MGI
PMID:17029558
NCBI chr34:33,747,495...34,299,389
Ensembl chr34:33,748,843...34,299,276
G
MED1
mediator complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349
G
MMP13
matrix metallopeptidase 13
ISO
RGD
PMID:11850435
RGD:1582550
NCBI chr 5:28,793,568...28,864,832
Ensembl chr 5:28,850,522...28,864,121
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
G
NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
G
PITX1
paired like homeodomain 1
acts_upstream_of_or_within involved_in
ISO
(PMID:18231602) (PMID:22071103)
MGI CACAO
PMID:18231602 PMID:22071103
NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941
G
PITX2
paired like homeodomain 2
acts_upstream_of_or_within
ISO
(PMID:18231602)
MGI
PMID:18231602
NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
G
RARB
retinoic acid receptor beta
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
G
RARG
retinoic acid receptor gamma
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
G
RPGRIP1L
RPGRIP1 like
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
G
RSPO2
R-spondin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
G
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
(PMID:16192310)
MGI
PMID:16192310
NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
G
TBX3
T-box transcription factor 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
G
TBX4
T-box transcription factor 4
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
G
TWIST1
twist family bHLH transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
G
WNT3
Wnt family member 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
G
WNT7A
Wnt family member 7A
involved_in acts_upstream_of_or_within
ISO
(PMID:16826533) (PMID:15880584)
BHF-UCL MGI
PMID:15880584 PMID:16826533
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
ISO IEA
RGD Ensembl
PMID:19191224
GO_REF:0000107 RGD:2312786
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
ACD
ACD shelterin complex subunit and telomerase recruitment factor
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
G
ALDH1A2
aldehyde dehydrogenase 1 family member A2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
G
ALX1
ALX homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr15:26,838,615...26,858,786
Ensembl chr15:26,834,670...26,858,803
G
BMP4
bone morphogenetic protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
G
BMP7
bone morphogenetic protein 7
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
G
C2CD3
C2 domain containing 3 centriole elongation regulator
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr21:24,127,390...24,272,473
Ensembl chr21:24,127,598...24,272,657
G
CHST11
carbohydrate sulfotransferase 11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
G
CYP26B1
cytochrome P450 family 26 subfamily B member 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894
G
DICER1
dicer 1, ribonuclease III
acts_upstream_of_or_within
ISO
(PMID:16040801)
MGI
PMID:16040801
NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
G
DKK1
dickkopf WNT signaling pathway inhibitor 1
acts_upstream_of_or_within
ISO
(PMID:15242796)
MGI
PMID:15242796
NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
G
DLX5
distal-less homeobox 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:22,080,351...22,085,188
Ensembl chr14:22,080,699...22,084,867
G
DLX6
distal-less homeobox 6
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:22,067,253...22,086,284
Ensembl chr14:22,067,149...22,220,799
G
DYNC2H1
dynein cytoplasmic 2 heavy chain 1
acts_upstream_of_or_within
ISO
(PMID:16229832)
MGI
PMID:16229832
NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334
G
EN1
engrailed homeobox 1
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:7624797)
Ensembl ParkinsonsUK-UCL
PMID:7624797
GO_REF:0000107
NCBI chr19:31,124,325...31,129,538
G
FBN2
fibrillin 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
G
FGF4
fibroblast growth factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977
G
FGF9
fibroblast growth factor 9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
G
FGFR1
fibroblast growth factor receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
G
FRAS1
Fraser extracellular matrix complex subunit 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
G
GJA5
gap junction protein alpha 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:58,289,327...58,305,315
Ensembl chr17:58,289,327...58,305,315
G
GLI3
GLI family zinc finger 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
G
GREM1
gremlin 1, DAN family BMP antagonist
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
G
HNF1A
HNF1 homeobox A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
G
HOXA10
homeobox A10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,346,462...40,348,900
Ensembl chr14:40,346,462...40,354,396
G
HOXA11
homeobox A11
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
G
HOXC10
homeobox C10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr27:1,272,272...1,277,411
Ensembl chr27:1,273,131...1,323,370
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
G
HOXD11
homeobox D11
acts_upstream_of_or_within
ISO
(PMID:14668414)
MGI
PMID:14668414
NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
G
HOXD13
homeobox D13
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,901,184...19,903,837
G
LEF1
lymphoid enhancer binding factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019
G
LRP4
LDL receptor related protein 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
G
LRP6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
(PMID:20359476)
MGI
PMID:20359476
NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
G
MBNL1
muscleblind like splicing regulator 1
involved_in
ISO
(PMID:12915312)
UniProt
PMID:12915312
NCBI chr23:46,697,755...46,941,300
Ensembl chr23:46,737,790...46,938,233
G
MEGF8
multiple EGF like domains 8
involved_in
ISO
(PMID:24052814)
UniProt
PMID:24052814
NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
G
MOSMO
modulator of smoothened
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:23,544,759...23,607,810
Ensembl chr 6:23,542,527...23,607,801
G
MSX1
msh homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:19422820) (PMID:15930102)
MGI
PMID:15930102 PMID:19422820
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
G
MUSTN1
musculoskeletal, embryonic nuclear protein 1
ISO
RGD
PMID:14718386
RGD:1302424
G
NOTCH1
notch receptor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
G
NOTCH2
notch receptor 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr17:56,854,825...57,020,157
Ensembl chr17:56,860,429...57,020,857
G
PBX1
PBX homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr38:18,378,997...18,703,694
Ensembl chr38:18,418,093...18,703,497
G
PBX2
PBX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr12:1,577,639...1,582,609
Ensembl chr12:1,578,707...1,584,688
G
PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:11,327,086...11,437,799
Ensembl chr27:11,426,647...11,437,303
G
PRRX1
paired related homeobox 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787
G
PRRX2
paired related homeobox 2
acts_upstream_of_or_within
ISO
(PMID:9729491), (PMID:9882503)
MGI
PMID:9729491 PMID:9882503
NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348
G
PSEN1
presenilin 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
G
PSEN2
presenilin 2
acts_upstream_of_or_within
ISO
(PMID:16169548)
MGI
PMID:16169548
NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
G
PTCH1
patched 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
G
SALL4
spalt like transcription factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:37,941,498...37,959,713
Ensembl chr24:37,940,034...38,037,287
G
SDHAF3
succinate dehydrogenase complex assembly factor 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr14:22,153,377...22,221,918
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
G
SHOX2
SHOX homeobox 2
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
G
SKI
SKI proto-oncogene
acts_upstream_of_or_within
ISO
(PMID:12435627)
MGI
PMID:12435627
NCBI chr 5:57,144,178...57,216,385
Ensembl chr 5:57,145,825...57,214,403
G
SP8
Sp8 transcription factor
acts_upstream_of_or_within involved_in
IEA ISO
(PMID:15358670)
Ensembl UniProt
PMID:15358670
GO_REF:0000107
NCBI chr14:34,786,296...34,791,495
G
SP9
Sp9 transcription factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:18,401,003...18,404,874
Ensembl chr36:18,400,918...18,403,135
G
TBX4
T-box transcription factor 4
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
G
TBX5
T-box transcription factor 5
acts_upstream_of_or_within involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
G
TGFB2
transforming growth factor beta 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
G
TP63
tumor protein p63
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
UCP3
uncoupling protein 3
acts_upstream_of_or_within
ISO
(PMID:19004860)
MGI
PMID:19004860
NCBI chr21:24,272,522...24,290,304
Ensembl chr21:24,277,896...24,288,639
G
WDR19
WD repeat domain 19
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
G
WNT5A
Wnt family member 5A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
ISO
(PMID:15242796)
MGI
PMID:15242796
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
ISO
MGI
MGI:61278
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
FZD6
frizzled class receptor 6
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:4,732,541...4,771,294
Ensembl chr13:4,733,017...4,772,115
G
MSX1
msh homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:21465616)
Ensembl MGI
PMID:21465616
GO_REF:0000107
NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
G
MSX2
msh homeobox 2
acts_upstream_of_or_within
ISO
(PMID:21465616)
MGI
PMID:21465616
NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
G
PRICKLE1
prickle planar cell polarity protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:11,327,086...11,437,799
Ensembl chr27:11,426,647...11,437,303
G
CTNNB1
catenin beta 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
G
OSR1
odd-skipped related transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
G
OSR2
odd-skipped related transciption factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
G
ARK2C
arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:44,834,006...44,939,538
Ensembl chr 7:44,840,099...44,940,619
G
FMN1
formin 1
acts_upstream_of_or_within
ISO
(PMID:17554679)
MGI
PMID:17554679
NCBI chr30:1,782,726...2,215,449
Ensembl chr30:1,815,512...2,184,909
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,929,479...19,932,861
G
NIPBL
NIPBL cohesin loading factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
G
SALL1
spalt like transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
G
SALL3
spalt like transcription factor 3
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 1:1,413,991...1,421,516
Ensembl chr 1:1,416,390...1,435,326
G
TBX3
T-box transcription factor 3
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
G
TBX5
T-box transcription factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
G
TFAP2A
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
(PMID:9811866)
MGI
PMID:9811866
NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
G
TFAP2B
transcription factor AP-2 beta
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr12:18,544,176...18,574,300
Ensembl chr12:18,544,446...18,572,902
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
ISO
MGI
MGI:48652
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
ATP7A
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI
MGI:61157
NCBI chr X:60,203,336...60,356,525
Ensembl chr X:60,203,270...60,352,869
G
BMPR1A
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
G
FMN1
formin 1
acts_upstream_of_or_within
ISO
(PMID:17554679)
MGI
PMID:17554679
NCBI chr30:1,782,726...2,215,449
Ensembl chr30:1,815,512...2,184,909
G
GDF5
growth differentiation factor 5
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
G
HOTAIR
HOX transcript antisense RNA
acts_upstream_of_or_within involved_in
ISO
(PMID:25909911)
MGI
PMID:25909911
NCBI chr27:1,296,506...1,300,023
G
HOXD10
homeobox D10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
G
HOXD9
homeobox D9
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr36:19,929,479...19,932,861
G
PITX1
paired like homeodomain 1
acts_upstream_of_or_within
ISO
(PMID:10049363) (PMID:15621531), (PMID:16989801) (PMID:10101115)
MGI
PMID:10049363 PMID:10101115 PMID:15621531 PMID:16989801
NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941
G
PTCH1
patched 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
G
SALL1
spalt like transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
G
SALL3
spalt like transcription factor 3
acts_upstream_of_or_within
ISO
(PMID:19168674)
MGI
PMID:19168674
NCBI chr 1:1,413,991...1,421,516
Ensembl chr 1:1,416,390...1,435,326
G
TFAP2B
transcription factor AP-2 beta
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr12:18,544,176...18,574,300
Ensembl chr12:18,544,446...18,572,902
G
TWIST1
twist family bHLH transcription factor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
G
WNT7A
Wnt family member 7A
acts_upstream_of_or_within
ISO
MGI
MGI:48652
NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
G
ZBTB16
zinc finger and BTB domain containing 16
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
G
COL2A1
collagen type II alpha 1 chain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
G
FGF10
fibroblast growth factor 10
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
G
FGFR2
fibroblast growth factor receptor 2
involved_in acts_upstream_of_or_within
ISS ISO
(PMID:9435295) (PMID:10518547)
UniProt MGI
PMID:9435295 PMID:10518547
GO_REF:0000024
NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
G
PLXNA2
plexin A2
involved_in
ISO
(PMID:19666519)
BHF-UCL
PMID:19666519
NCBI chr 7:6,863,518...7,049,301
Ensembl chr 7:6,863,663...7,049,250
G
SEMA3C
semaphorin 3C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:20,457,683...20,748,008
Ensembl chr18:20,459,925...20,635,276
G
SHH
sonic hedgehog signaling molecule
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
G
SOX9
SRY-box transcription factor 9
involved_in
ISO
(PMID:20940257)
UniProt
PMID:20940257
NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
G
WNT3
Wnt family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
G
ZNF219
zinc finger protein 219
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:18,178,861...18,186,650
Ensembl chr15:18,180,901...18,192,773
G
COL3A1
collagen type III alpha 1 chain
involved_in
ISO
(PMID:31655293)
MGI
PMID:31655293
NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
G
COL6A1
collagen type VI alpha 1 chain
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062
G
ERRFI1
ERBB receptor feedback inhibitor 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:61,621,964...61,636,152
Ensembl chr 5:61,622,550...61,636,148
G
EXT1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
G
SULF1
sulfatase 1
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378
G
ATRX
ATRX chromatin remodeler
acts_upstream_of_or_within
IEA
Ensembl
GO_REF:0000107
NCBI chr X:59,772,067...60,107,016
Ensembl chr X:59,774,585...60,106,980
G
ENPP1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
(PMID:24770645)
MGI
PMID:24770645
NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718
G
VPS54
VPS54 subunit of GARP complex
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:63,598,373...63,676,753
Ensembl chr10:63,599,229...63,676,747
G
LARGE1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:24722207)
MGI
PMID:24722207
NCBI chr10:29,875,381...30,396,934
Ensembl chr10:29,919,521...30,395,787
G
MIR23A
microRNA mir-23a
acts_upstream_of_or_within
ISO
(PMID:24101522)
MGI
PMID:24101522
NCBI chr20:48,620,335...48,620,386
Ensembl chr20:48,620,323...48,620,397
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all