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ONTOLOGY REPORT - ANNOTATIONS

Term:limb morphogenesis
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Accession:GO:0035108 term browser browse the term
Definition:The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
Synonyms:narrow_synonym: limb bud morphogenesis


show annotations for term's descendants           Sort by:
limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9847249)
(PMID:9374397), (PMID:9847249)		 MGI PMID:9374397 PMID:9847249 NCBI chr11:44,219,865...44,269,597 JBrowse link
G ASPH aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chr 8:57,921,580...58,134,778
Ensembl chr 8:59,629,707...59,843,658 		JBrowse link
G BAK1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (PMID:11163212) MGI PMID:11163212 NCBI chr 6:33,146,998...33,154,755
Ensembl chr 6:34,255,769...34,263,211 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468 		JBrowse link
G CIBAR1 CBY1 interacting BAR domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:90,324,158...90,353,161
Ensembl chr 8:92,270,538...92,298,846 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:10100048) MGI PMID:10100048 NCBI chr12:40,726,137...40,757,690 JBrowse link
G EVX2 even-skipped homeobox 2 acts_upstream_of_or_within ISO (PMID:8978698) MGI PMID:8978698 NCBI chr2B:63,359,892...63,364,762 JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:123,673,209...123,953,741
Ensembl chr 5:129,435,248...129,715,711 		JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:188,425,697...188,466,721
Ensembl chr 1:193,284,158...193,320,554 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11543619)
(PMID:8978698)		 MGI PMID:8978698 PMID:11543619 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:9097952) MGI PMID:9097952 NCBI chr 4:1,102,288...1,120,973
Ensembl chr 4:1,020,582...1,037,877 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G IQCE IQ motif containing E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:2,818,723...2,874,505
Ensembl chr 7:2,913,549...2,964,046 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:20589901) MGI PMID:20589901 NCBI chr 9:97,730,850...97,820,554
Ensembl chr 9:126,240,722...126,322,420 		JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15537447) MGI PMID:15537447 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15537447)
(PMID:15469977)		 MGI PMID:15469977 PMID:15537447 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G NFIA nuclear factor I A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:60,331,945...60,713,729
Ensembl chr 1:61,938,945...62,526,753 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,642,534...35,660,210
Ensembl chr 9:36,445,576...36,462,637 		JBrowse link
G PCNT pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683 NCBI chr21:32,665,361...32,741,592
Ensembl chr21:45,914,665...46,042,990 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502 		JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic acts_upstream_of_or_within ISO (PMID:21553379) MGI PMID:21553379 NCBI chr2A:42,146,153...42,156,652 JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G SIK3 SIK family kinase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:111,680,884...111,932,424
Ensembl chr11:115,613,478...115,730,158 		JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:27046536) Ensembl
MGI		 PMID:27046536 GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TBX4 T-box transcription factor 4 involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr17:55,554,549...55,587,253
Ensembl chr17:60,677,518...60,705,413 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
G ZNF141 zinc finger protein 141 involved_in ISO (PMID:23160277) UniProt PMID:23160277 NCBI chr 4:338,963...385,278 JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2A:90,862,070...90,909,833
Ensembl chr2A:112,337,927...112,385,079 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9268572)
(PMID:9272948)		 MGI PMID:9268572 PMID:9272948 NCBI chr11:44,219,865...44,269,597 JBrowse link
G B9D1 B9 domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:31,735,065...31,779,454
Ensembl chr17:36,914,969...36,941,391 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:53,385,837...53,417,019
Ensembl chr 8:50,753,792...50,785,055 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:69,085,434...69,244,791 JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:102,035,480...102,340,084
Ensembl chr12:105,431,075...105,731,172 		JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:73,122,305...73,265,343
Ensembl chr 5:78,402,466...78,544,807 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,166,019...20,290,803
Ensembl chr 1:21,206,199...21,278,909 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:98,212,907...98,297,477
Ensembl chr10:101,685,804...101,769,672 		JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:188,425,697...188,466,721
Ensembl chr 1:193,284,158...193,320,554 		JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:19,900,324...20,103,303
Ensembl chr13:38,490,750...38,687,048 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275)
(PMID:27158779)		 MGI PMID:19877275 PMID:27158779 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941) MGI PMID:17504940 PMID:17504941 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:19439426) MGI PMID:19439426 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GNA12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chr 7:2,989,832...3,104,848 JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:98,129,147...98,308,120
Ensembl chr 8:100,308,575...100,471,830 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:12070084) MGI PMID:12070084 NCBI chr 4:165,755,000...165,758,735 JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410 		JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (PMID:21093383) BHF-UCL PMID:21093383 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004 		JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:34,777,790...34,782,104
Ensembl chr12:35,567,093...35,570,396 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:17714700)
(PMID:12869760)
(PMID:8900279)		 MGI PMID:8900279 PMID:12869760 PMID:17714700 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD12 homeobox D12 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,379,611...63,382,293
Ensembl chr2B:181,089,181...181,091,055 		JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:17714700)
(PMID:9342042)		 MGI PMID:8900279 PMID:9342042 PMID:17714700 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101), (PMID:16254602)
(PMID:15755804), (PMID:15930098)
(PMID:15930098)
(PMID:19036983)		 MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:17889828) Ensembl
AgBase		 PMID:17889828 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr 4:119,793,245...119,890,949
Ensembl chr 4:131,109,733...131,186,590 		JBrowse link
G LMBR1 limb development membrane protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:148,301,263...148,512,407
Ensembl chr 7:159,999,389...160,152,858 		JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,197,335...63,279,473
Ensembl chr2B:180,909,968...180,989,448 		JBrowse link
G LOC100986730 guanine nucleotide-binding protein G(q) subunit alpha acts_upstream_of_or_within ISO (PMID:12077299) MGI PMID:12077299 NCBI chr 9:46,816,409...47,129,116
Ensembl chr 9:76,575,815...76,773,849 		JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:46,808,090...46,868,649
Ensembl chr11:47,366,321...47,411,105 		JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15142971)
(PMID:19795512)		 MGI PMID:15142971 PMID:19795512 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:60,362,635...60,555,445
Ensembl chr2B:177,818,344...178,010,556 		JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:52,281,443...52,295,919
Ensembl chr17:57,137,254...57,151,328 		JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr2A:15,925,130...15,931,605 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:15755804), (PMID:9636176) MGI PMID:9636176 PMID:15755804 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:20660756) MGI PMID:20660756 NCBI chr 9:62,782,183...63,005,626
Ensembl chr 9:90,851,983...90,965,084 		JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 IEA
ISO		 (PMID:11044396) Ensembl
Roslin_Institute		 PMID:11044396 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:55,501,932...55,511,537
Ensembl chr17:60,622,098...60,630,189 		JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,481,043...43,485,189
Ensembl chr17:48,214,392...48,217,773 		JBrowse link
G TMEM231 transmembrane protein 231 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:56,107,360...56,126,172
Ensembl chr16:75,455,303...75,473,874 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785 		JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:21,699,674...21,877,481
Ensembl chr15:39,861,102...40,034,982 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr2A:63,180,279...63,658,804
Ensembl chr2A:64,325,379...64,785,256 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:112,706,782...112,717,635
Ensembl chr 1:127,624,197...127,634,004 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chr11:44,219,865...44,269,597 JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,166,672...2,817,827
Ensembl chr12:2,114,140...2,744,826 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:9362463) MGI PMID:9362463 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXA13 homeobox A13 acts_upstream_of_or_within ISO (PMID:15733672) MGI PMID:15733672 NCBI chr 7:27,838,656...27,844,562 JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,806,942...27,810,304
Ensembl chr 7:27,405,931...27,409,984 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,197,335...63,279,473
Ensembl chr2B:180,909,968...180,989,448 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198)
(PMID:15880584)
(PMID:19653321)
(PMID:11029008)		 MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chr 3:166,099,530...166,677,739
Ensembl chr 3:174,154,814...174,731,252 		JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:35,886,741...35,974,133
Ensembl chr 9:36,699,631...36,774,116 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:104,535,751...104,721,463
Ensembl chr 8:106,685,116...106,870,494 		JBrowse link
G RUNX2 RUNX family transcription factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:45,003,962...45,133,148
Ensembl chr 6:46,189,432...46,524,389 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr12:111,954,222...112,009,261
Ensembl chr12:115,333,609...115,389,739 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:9811866) UniProt PMID:9811866 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:12175489) MGI PMID:12175489 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) MGI PMID:15371327 NCBI chr 1:203,320,990...203,350,599
Ensembl chr 1:208,300,609...208,327,191 		JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 ALF transcription elongation factor 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr2A:100,535,363...100,993,626 JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:112,706,782...112,717,635
Ensembl chr 1:127,624,197...127,634,004 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chr11:44,219,865...44,269,597 JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186 		JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16319892) MGI PMID:16319892 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:16245339) MGI PMID:16245339 NCBI chr11:64,866,649...64,871,031 JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chr20:55,190,607...55,262,245 JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:122,677,072...123,131,511
Ensembl chr  X:132,979,612...133,432,441 		JBrowse link
G LOC100978090 protein ALEX acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:55,204,188...55,206,608
Ensembl chr20:56,474,459...56,621,747 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198)
(PMID:15880584)
(PMID:19653321)		 MGI PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chr 3:166,099,530...166,677,739
Ensembl chr 3:174,154,814...174,731,252 		JBrowse link
G MED1 mediator complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118 		JBrowse link
G MMP13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G PITX1 paired like homeodomain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18231602) Ensembl
MGI		 PMID:18231602 GO_REF:0000107 NCBI chr 5:130,422,920...130,429,828
Ensembl chr 5:136,565,285...136,570,350 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G RARB retinoic acid receptor beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297 		JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:104,535,751...104,721,463
Ensembl chr 8:106,685,116...106,870,494 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:16192310) MGI PMID:16192310 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TBX4 T-box transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:55,554,549...55,587,253
Ensembl chr17:60,677,518...60,705,413 		JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988167) BHF-UCL PMID:8988167 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WNT3 Wnt family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA		 RGD
Ensembl		 PMID:19191224 GO_REF:0000107 RGD:2312786 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:48,001,408...48,004,620
Ensembl chr16:67,390,703...67,393,685 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:82,800,273...82,822,031
Ensembl chr12:85,902,113...85,923,774 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:69,085,434...69,244,791 JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:102,035,480...102,340,084
Ensembl chr12:105,431,075...105,731,172 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:16040801) MGI PMID:16040801 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:15242796) MGI PMID:15242796 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776 		JBrowse link
G DLX5 distal-less homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:88,972,066...88,977,588
Ensembl chr 7:102,555,267...102,561,186 		JBrowse link
G DLX6 distal-less homeobox 6 acts_upstream_of_or_within ISO (PMID:18326838)
(PMID:12112878)		 MGI PMID:12112878 PMID:18326838 NCBI chr 7:88,957,570...88,962,703 JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194 		JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15242796)
(PMID:7624797)
(PMID:8684466)		 MGI
ParkinsonsUK-UCL		 PMID:7624797 PMID:8684466 PMID:15242796 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:123,673,209...123,953,741
Ensembl chr 5:129,435,248...129,715,711 		JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:15328019) MGI PMID:15328019 NCBI chr11:64,866,649...64,871,031 JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:2,967,713...3,000,554
Ensembl chr13:21,273,333...21,307,198 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904 		JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:45,650,346...46,138,222
Ensembl chr 4:51,500,396...51,981,476 		JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:31,761,199...31,766,229
Ensembl chr20:32,882,094...32,886,899 		JBrowse link
G GJA5 gap junction protein alpha 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:123,200,111...123,224,626
Ensembl chr 1:112,328,337...112,329,413 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:12808456) MGI PMID:12808456 NCBI chr15:11,213,870...11,230,619 JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:118,562,308...118,584,596
Ensembl chr12:121,932,671...121,955,911 		JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,815,112...27,818,829
Ensembl chr 7:27,415,833...27,423,580 		JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXC10 homeobox C10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:34,764,956...34,770,088
Ensembl chr12:35,553,262...35,558,393 		JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:11850178) MGI PMID:11850178 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980 		JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:46,808,090...46,868,649
Ensembl chr11:47,366,321...47,411,105 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:20359476) MGI PMID:20359476 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 involved_in ISO (PMID:12915312) UniProt PMID:12915312 NCBI chr 3:149,288,323...149,487,635
Ensembl chr 3:156,888,763...157,054,207 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MOSMO modulator of smoothened acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:16,645,508...16,725,434
Ensembl chr16:22,319,108...22,395,805 		JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:15930102)
(PMID:19422820)		 MGI PMID:15930102 PMID:19422820 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G MUSTN1 musculoskeletal, embryonic nuclear protein 1 ISO RGD PMID:14718386 RGD:1302424 NCBI chr 3:52,774,843...52,778,280
Ensembl chr 3:54,000,547...54,004,099 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G NOTCH2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840 		JBrowse link
G PBX1 PBX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:139,985,392...140,311,845
Ensembl chr 1:143,778,701...144,104,797 		JBrowse link
G PBX2 PBX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:31,832,131...31,837,585
Ensembl chr 6:32,711,166...32,717,453 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PRRX1 paired related homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:146,151,633...146,227,926
Ensembl chr 1:149,867,634...149,943,810 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491), (PMID:9882503) MGI PMID:9729491 PMID:9882503 NCBI chr 9:100,792,324...100,849,923 JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:16169548) MGI PMID:16169548 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G SALL4 spalt like transcription factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:48,130,387...48,150,569
Ensembl chr20:49,254,039...49,273,589 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SHOX2 SHOX homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239 		JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:12435627) MGI PMID:12435627 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within
involved_in		 ISO (PMID:14597661)
(PMID:15358670)		 MGI
UniProt		 PMID:14597661 PMID:15358670 NCBI chr 7:21,456,649...21,463,844 JBrowse link
G SP9 Sp9 transcription factor involved_in ISO (PMID:15358670) UniProt PMID:15358670 NCBI chr2B:61,612,140...61,615,694 JBrowse link
G TBX4 T-box transcription factor 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:55,554,549...55,587,253
Ensembl chr17:60,677,518...60,705,413 		JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr12:111,954,222...112,009,261
Ensembl chr12:115,333,609...115,389,739 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764)
(PMID:11350121)
(PMID:12142027)		 MGI PMID:11350121 PMID:12142027 PMID:15030764 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:10021340) MGI PMID:10021340 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI MGI:61278 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD6 frizzled class receptor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:99,954,523...99,989,153
Ensembl chr 8:102,110,317...102,144,363 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARK2C arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:39,615,759...39,742,492
Ensembl chr18:43,244,066...43,274,212 		JBrowse link
G FMN1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chr15:11,271,794...11,698,539
Ensembl chr15:30,114,113...30,495,909 		JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:31,761,199...31,766,229
Ensembl chr20:32,882,094...32,886,899 		JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963 		JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819 		JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr18:72,381,249...72,403,789 JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:111,954,222...112,009,261
Ensembl chr12:115,333,609...115,389,739 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,376,157...50,406,740
Ensembl chr 6:51,635,899...51,664,691 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI MGI:61157 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G FMN1 formin 1 acts_upstream_of_or_within ISO (PMID:17554679) MGI PMID:17554679 NCBI chr15:11,271,794...11,698,539
Ensembl chr15:30,114,113...30,495,909 		JBrowse link
G GDF5 growth differentiation factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:31,761,199...31,766,229
Ensembl chr20:32,882,094...32,886,899 		JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963 		JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415 		JBrowse link
G PITX1 paired like homeodomain 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:130,422,920...130,429,828
Ensembl chr 5:136,565,285...136,570,350 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819 		JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:19168674) MGI PMID:19168674 NCBI chr18:72,381,249...72,403,789 JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,376,157...50,406,740
Ensembl chr 6:51,635,899...51,664,691 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:10700192) MGI PMID:10700192 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
limb bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain involved_in ISO (PMID:20940257) UniProt PMID:20940257 NCBI chr12:40,726,137...40,757,690 JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:10518547)
(PMID:9435295)		 MGI PMID:9435295 PMID:10518547 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G PLXNA2 plexin A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,600,533...183,848,418
Ensembl chr 1:188,408,048...188,603,208 		JBrowse link
G SEMA3C semaphorin 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:72,706,615...72,884,163
Ensembl chr 7:86,368,753...86,545,580 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20940257) UniProt PMID:20940257 NCBI chr17:66,028,737...66,034,122 JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
G ZNF219 zinc finger protein 219 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:1,904,632...1,919,304
Ensembl chr14:19,986,653...20,000,300 		JBrowse link
limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240 		JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:6,771,619...6,786,217
Ensembl chr 1:8,011,848...8,033,674 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
post-embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:24770645) MGI PMID:24770645 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634 		JBrowse link
post-embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:24722207) MGI PMID:24722207 NCBI chr22:14,077,463...14,929,250 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    developmental process 6685
      anatomical structure morphogenesis 2855
        appendage morphogenesis 182
          limb morphogenesis 182
            embryonic limb morphogenesis + 147
            forelimb morphogenesis + 47
            hindlimb morphogenesis + 47
            limb bud formation + 9
            limb joint morphogenesis + 7
            post-embryonic limb morphogenesis + 4
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 6685
      anatomical structure development 6266
        multicellular organism development 5026
          appendage development 218
            appendage morphogenesis 182
              limb morphogenesis 182
                embryonic limb morphogenesis + 147
                forelimb morphogenesis + 47
                hindlimb morphogenesis + 47
                limb bud formation + 9
                limb joint morphogenesis + 7
                post-embryonic limb morphogenesis + 4
paths to the root