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ONTOLOGY REPORT - ANNOTATIONS


Term:appendage morphogenesis
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Accession:GO:0035107 term browser browse the term
Definition:The process in which the anatomical structures of appendages are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch.



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apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3581932|PMID:15967824) MGI
Ensembl
PMID:15967824 GO_REF:0000107 MGI:3581932 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (MGI:3581932|PMID:15967824) MGI PMID:15967824 MGI:3581932 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3608163|PMID:16245338) MGI PMID:16245338 MGI:3608163 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572)
(MGI:1095777|PMID:9272948)
MGI PMID:9268572 PMID:9272948 MGI:1095762 MGI:1095777 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G B9D1 B9 domain containing 1 acts_upstream_of_or_within ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr 5:40,854,110...40,866,828
Ensembl chr 5:40,854,127...40,866,824
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4430000|PMID:20043884) Ensembl
Ensembl
MGI
PMID:20043884 GO_REF:0000107 MGI:4430000 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3799383|PMID:18539921) Ensembl
Ensembl
MGI
PMID:18539921 GO_REF:0000107 MGI:3799383 NCBI chr29:8,176,977...8,215,561
Ensembl chr29:8,182,508...8,215,868
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (MGI:3767479|PMID:16079159) MGI PMID:16079159 MGI:3767479 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
JBrowse link
G CPLANE1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO (MGI:5648689|PMID:25877302) MGI PMID:25877302 MGI:5648689 NCBI chr 4:71,435,994...71,567,567
Ensembl chr 4:71,430,575...71,567,267
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:4430000|PMID:20043884)
(MGI:2670493|PMID:12923052)
MGI PMID:12923052 PMID:20043884 MGI:2670493 MGI:4430000 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G ECE1 endothelin converting enzyme 1 involved_in ISO (PMID:9915973) BHF-UCL PMID:9915973 NCBI chr 2:77,732,645...77,793,950
Ensembl chr 2:77,678,686...77,792,114
JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1344213|PMID:10471509)
(MGI:1278141|PMID:9733575)
Ensembl
MGI
Ensembl
PMID:9733575 PMID:10471509 GO_REF:0000107 MGI:1278141 MGI:1344213 NCBI chr28:14,219,724...14,336,846
Ensembl chr28:14,219,893...14,301,924
JBrowse link
G FLVCR1 FLVCR heme transporter 1 acts_upstream_of_or_within ISO (MGI:3775000|PMID:18258918) MGI PMID:18258918 MGI:3775000 NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (MGI:5646594|PMID:26234751) MGI PMID:26234751 MGI:5646594 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456
JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4367921|PMID:19877275)
(MGI:5912570|PMID:27158779)
MGI PMID:19877275 PMID:27158779 MGI:4367921 MGI:5912570 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699
JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940) MGI PMID:17504940 PMID:17504941 MGI:3710451 MGI:3710452 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827
JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3849919|PMID:19439426) MGI
Ensembl
PMID:19439426 GO_REF:0000107 MGI:3849919 NCBI chr 1:60,941,772...60,944,694
Ensembl chr 1:60,929,097...60,942,936
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3833793|PMID:19056373) MGI PMID:19056373 MGI:3833793 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3765370|PMID:17714700)
(MGI:1095762|PMID:9268572), (MGI:3692156|PMID:16254602), (MGI:3821634|PMID:19036983)
(MGI:5439039|PMID:22841643)
MGI PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 MGI:1095762 MGI:3692156 MGI:3765370 MGI:3821634 MGI:5439039 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GNA12 G protein subunit alpha 12 acts_upstream_of_or_within ISO (MGI:2182490|PMID:12077299) MGI PMID:12077299 MGI:2182490 NCBI chr 6:14,375,144...14,476,018
Ensembl chr 6:14,413,576...14,473,764
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:2182490|PMID:12077299) MGI PMID:12077299 MGI:2182490 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
JBrowse link
G GRHL2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4943100|PMID:21377456) MGI
Ensembl
Ensembl
PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (MGI:2429440|PMID:12070084) MGI PMID:12070084 MGI:2429440 NCBI chr25:24,140,496...24,143,143
Ensembl chr25:24,141,243...24,152,958
JBrowse link
G HDAC1 histone deacetylase 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HDAC2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr12:70,053,822...70,083,491
Ensembl chr12:70,053,297...70,103,578
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr27:1,287,326...1,289,577
Ensembl chr27:1,287,380...1,289,372
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760)
(MGI:83869|PMID:8900279)
(MGI:3765370|PMID:17714700)
MGI PMID:8900279 PMID:12869760 PMID:17714700 MGI:2667742 MGI:3765370 MGI:83869 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
Ensembl
Ensembl
MGI
PMID:8900279 PMID:17714700 GO_REF:0000107 MGI:3765370 MGI:83869 NCBI chr36:19,907,424...19,910,827
Ensembl chr36:19,907,442...19,908,408
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:3765370|PMID:17714700)
(MGI:83869|PMID:8900279)
(MGI:1097490|PMID:9342042)
MGI PMID:8900279 PMID:9342042 PMID:17714700 MGI:1097490 MGI:3765370 MGI:83869 NCBI chr36:19,901,184...19,903,837 JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:3577662|PMID:15755804) MGI PMID:15755804 MGI:3577662 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G IFT52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) MGI PMID:15930098 MGI:3579954 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (MGI:2660994|PMID:12701101), (MGI:3692156|PMID:16254602)
(MGI:3577662|PMID:15755804), (MGI:3579954|PMID:15930098)
(MGI:3579954|PMID:15930098)
(MGI:3821634|PMID:19036983)
MGI PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 MGI:2660994 MGI:3577662 MGI:3579954 MGI:3692156 MGI:3821634 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISO (PMID:17889828)
(MGI:4822496|PMID:20660756)
AgBase
MGI
PMID:17889828 PMID:20660756 MGI:4822496 NCBI chr37:25,616,942...25,622,989 JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5644615|PMID:25774014) Ensembl
Ensembl
MGI
PMID:25774014 GO_REF:0000107 MGI:5644615 NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496
JBrowse link
G LMBR1 limb development membrane protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151954|PMID:11606546) MGI
Ensembl
Ensembl
PMID:11606546 GO_REF:0000107 MGI:2151954 NCBI chr16:19,295,235...19,442,390
Ensembl chr16:19,296,149...19,442,369
JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1097490|PMID:9342042) MGI
Ensembl
Ensembl
PMID:9342042 GO_REF:0000107 MGI:1097490 NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
JBrowse link
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (MGI:3623169|PMID:16517118) MGI PMID:16517118 MGI:3623169 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971) MGI PMID:15142971 MGI:3045836 NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3045836|PMID:15142971)
(MGI:4413372|PMID:19795512)
MGI PMID:15142971 PMID:19795512 MGI:3045836 MGI:4413372 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in
acts_upstream_of_or_within
ISO (PMID:26755636)
(MGI:5771618|PMID:26755636)
UniProt
MGI
PMID:26755636 MGI:5771618 NCBI chr36:17,353,829...17,515,247
Ensembl chr36:17,341,300...17,514,869
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4367169|PMID:19776033)
(MGI:5487695|PMID:23454480)
(MGI:4868517|PMID:21045211)
Ensembl
Ensembl
MGI
PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 MGI:4367169 MGI:4868517 MGI:5487695 NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) MGI PMID:17360777 MGI:3790402 NCBI chr17:11,720,857...11,724,308 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:31,455,389...31,456,057 JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) MGI PMID:9636176 PMID:15755804 MGI:1267118 MGI:3577662 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (MGI:4822496|PMID:20660756) MGI PMID:20660756 MGI:4822496 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3806414|PMID:18729207) Ensembl
Ensembl
MGI
PMID:18729207 GO_REF:0000107 MGI:3806414 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3710451|PMID:17504941), (MGI:3710452|PMID:17504940)
(MGI:3039193|PMID:15075292), (MGI:4822496|PMID:20660756)
(MGI:3579954|PMID:15930098)
Ensembl
Ensembl
MGI
PMID:15075292 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000107 MGI:3039193 MGI:3579954 MGI:3710451 MGI:3710452 MGI:4822496 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 1:60,662,704...60,873,881
Ensembl chr 1:60,667,721...60,873,614
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in
ISO (MGI:5532232|PMID:23844108)
(PMID:12116211), (PMID:9207801)
MGI
UniProt
PMID:9207801 PMID:12116211 PMID:23844108 MGI:5532232 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:32,991,000...32,993,319
Ensembl chr 5:32,991,021...32,993,248
JBrowse link
G TMEM231 transmembrane protein 231 acts_upstream_of_or_within ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr 5:75,246,043...75,266,705
Ensembl chr 5:75,246,043...75,265,021
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr25:48,782,448...48,836,993
Ensembl chr25:48,782,463...48,834,374
JBrowse link
G TTBK2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (MGI:5493390|PMID:23141541) MGI PMID:23141541 MGI:5493390 NCBI chr30:9,674,911...9,844,860
Ensembl chr30:9,676,828...9,844,838
JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3841503|PMID:19286674), (MGI:3844764|PMID:19334287) Ensembl
Ensembl
MGI
PMID:19286674 PMID:19334287 GO_REF:0000107 MGI:3841503 MGI:3844764 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355
G UCP3 uncoupling protein 3 acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:3821640 NCBI chr21:24,272,522...24,290,304
Ensembl chr21:24,277,896...24,288,639
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector acts_upstream_of_or_within
involved_in
ISO (MGI:5544506|PMID:24302887)
(PMID:27158779)
MGI
GO_Central
PMID:24302887 PMID:27158779 MGI:5544506 NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4413372|PMID:19795512) MGI
Ensembl
Ensembl
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 ISO RGD PMID:19191224 RGD:2312786 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046038|PMID:15069081), (MGI:4422129|PMID:20034106) MGI
Ensembl
Ensembl
PMID:15069081 PMID:20034106 GO_REF:0000107 MGI:3046038 MGI:4422129 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chr27:44,007,363...44,748,251
Ensembl chr27:44,008,020...44,746,429
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:71462|PMID:7720575) MGI
Ensembl
Ensembl
PMID:7720575 GO_REF:0000107 MGI:71462 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3055626|PMID:15371327) MGI PMID:15371327 MGI:3055626 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463) MGI PMID:9362463 MGI:1194987 NCBI chr19:31,124,325...31,129,538 JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) MGI PMID:22916278 MGI:5462316 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXA13 homeobox A13 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3530958|PMID:15733672) MGI
Ensembl
Ensembl
PMID:15733672 GO_REF:0000107 MGI:3530958 NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980
JBrowse link
G HOXA9 homeobox A9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78984|PMID:8625797) Ensembl
Ensembl
MGI
PMID:8625797 GO_REF:0000107 MGI:78984 NCBI chr14:40,336,829...40,340,533
Ensembl chr14:40,337,999...40,339,923
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) MGI PMID:22916278 MGI:5462316 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within ISO (MGI:78984|PMID:8625797) MGI PMID:8625797 MGI:78984 NCBI chr36:19,929,479...19,932,861 JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1097490|PMID:9342042)
(MGI:5462316|PMID:22916278)
MGI
Ensembl
Ensembl
PMID:9342042 PMID:22916278 GO_REF:0000107 MGI:1097490 MGI:5462316 NCBI chr36:19,731,523...19,809,349
Ensembl chr36:19,732,276...19,808,769
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008)
(MGI:3774879|PMID:18256198)
(MGI:3578068|PMID:15880584)
(MGI:4413396|PMID:19653321)
MGI PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 MGI:1891551 MGI:3578068 MGI:3774879 MGI:4413396 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (MGI:3686680|PMID:17029558) MGI PMID:17029558 MGI:3686680 NCBI chr34:33,747,495...34,299,389
Ensembl chr34:33,748,843...34,299,276
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11520675) Ensembl
Ensembl
UniProt
PMID:11520675 GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709664|PMID:17473173) MGI
Ensembl
Ensembl
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (MGI:5424521|PMID:23213437) MGI PMID:23213437 MGI:5424521 NCBI chr11:52,519,303...52,607,753
Ensembl chr11:52,519,317...52,607,217
JBrowse link
G RPGRIP1L RPGRIP1 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3715393|PMID:17553904) Ensembl
Ensembl
MGI
PMID:17553904 GO_REF:0000107 MGI:3715393 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3774879|PMID:18256198) MGI
Ensembl
Ensembl
PMID:18256198 GO_REF:0000107 MGI:3774879 NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859
JBrowse link
G RUNX2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) MGI PMID:22916278 MGI:5462316 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928592|PMID:11118883), (MGI:2149276|PMID:11476582) Ensembl
Ensembl
MGI
PMID:11118883 PMID:11476582 GO_REF:0000107 MGI:1928592 MGI:2149276 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5462316|PMID:22916278) Ensembl
Ensembl
MGI
PMID:22916278 GO_REF:0000107 MGI:5462316 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
JBrowse link
G TBX3 T-box transcription factor 3 involved_in ISO (PMID:12116211) UniProt PMID:12116211 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2150876|PMID:11572777), (MGI:2448173|PMID:12490567) MGI
Ensembl
Ensembl
PMID:11572777 PMID:12490567 GO_REF:0000107 MGI:2150876 MGI:2448173 NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:1313057|PMID:9811866) UniProt PMID:9811866 MGI:1313057 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TP63 tumor protein p63 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5824492|PMID:25503409) Ensembl
MGI
Ensembl
PMID:25503409 GO_REF:0000107 MGI:5824492 NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:2180404|PMID:12175489) MGI PMID:12175489 MGI:2180404
G WNT3 Wnt family member 3 acts_upstream_of_or_within ISO (MGI:2450015|PMID:12569130) MGI PMID:12569130 MGI:2450015 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578068|PMID:15880584)
(MGI:1194987|PMID:9362463)
Ensembl
Ensembl
MGI
PMID:9362463 PMID:15880584 GO_REF:0000107 MGI:1194987 MGI:3578068 MGI:48652 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (MGI:3055626|PMID:15371327) MGI PMID:15371327 MGI:3055626 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295
JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:18616733) BHF-UCL PMID:18616733 NCBI chr10:42,587,173...43,111,739
Ensembl chr10:42,586,394...43,247,328
JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963
JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:2151109|PMID:11641221) MGI PMID:11641221 MGI:2151109 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1889107|PMID:10964473) Ensembl
Ensembl
MGI
PMID:10964473 GO_REF:0000107 MGI:1889107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611161|PMID:16207732) Ensembl
Ensembl
MGI
PMID:16207732 GO_REF:0000107 MGI:3611161 NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3773938|PMID:18231602)
(MGI:2670493|PMID:12923052)
MGI PMID:12923052 PMID:18231602 MGI:2670493 MGI:3773938 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3609457|PMID:16319892) MGI PMID:16319892 MGI:3609457 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608165|PMID:16245339) Ensembl
Ensembl
MGI
PMID:16245339 GO_REF:0000107 MGI:3608165 NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:3608165|PMID:16245339) MGI PMID:16245339 MGI:3608165 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (MGI:3619837|PMID:15797856) MGI PMID:15797856 MGI:3619837 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657
JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within ISO (MGI:1889107|PMID:10964473) MGI PMID:10964473 MGI:1889107 NCBI chr  X:104,313,426...104,751,215
Ensembl chr  X:104,313,591...104,751,756
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3578068|PMID:15880584)
(MGI:3774879|PMID:18256198)
(MGI:4413396|PMID:19653321)
MGI PMID:15880584 PMID:18256198 PMID:19653321 MGI:3578068 MGI:3774879 MGI:4413396 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MECOM MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (MGI:3686680|PMID:17029558) MGI PMID:17029558 MGI:3686680 NCBI chr34:33,747,495...34,299,389
Ensembl chr34:33,748,843...34,299,276
JBrowse link
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2682174|PMID:14500757) Ensembl
Ensembl
MGI
PMID:14500757 GO_REF:0000107 MGI:2682174 NCBI chr 9:22,989,257...23,019,350
Ensembl chr 9:22,989,301...23,019,349
JBrowse link
G MMP13 matrix metallopeptidase 13 ISO RGD PMID:11850435 RGD:1582550 NCBI chr 5:28,793,568...28,864,832
Ensembl chr 5:28,850,522...28,864,121
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3608163|PMID:16245338) MGI PMID:16245338 MGI:3608163 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11520675) Ensembl
Ensembl
UniProt
PMID:11520675 GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
G PITX1 paired like homeodomain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3773938|PMID:18231602) Ensembl
Ensembl
MGI
PMID:18231602 GO_REF:0000107 MGI:3773938 NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3773938|PMID:18231602) MGI PMID:18231602 MGI:3773938 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334064|PMID:10075839) Ensembl
Ensembl
MGI
PMID:10075839 GO_REF:0000107 MGI:1334064 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334064|PMID:10075839) MGI
Ensembl
Ensembl
PMID:10075839 GO_REF:0000107 MGI:1334064 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
JBrowse link
G RPGRIP1L RPGRIP1 like involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3715393|PMID:17553904) Ensembl
Ensembl
MGI
PMID:17553904 GO_REF:0000107 MGI:3715393 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G RSPO2 R-spondin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3774879|PMID:18256198) MGI
Ensembl
Ensembl
PMID:18256198 GO_REF:0000107 MGI:3774879 NCBI chr13:8,610,227...8,755,727
Ensembl chr13:8,611,952...8,754,859
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928592|PMID:11118883) Ensembl
Ensembl
MGI
PMID:11118883 GO_REF:0000107 MGI:1928592 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (MGI:3604915|PMID:16192310) MGI PMID:16192310 MGI:3604915 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within ISO (MGI:5532232|PMID:23844108) MGI PMID:23844108 MGI:5532232 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TBX4 T-box transcription factor 4 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
JBrowse link
G TP63 tumor protein p63 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5824492|PMID:25503409) Ensembl
MGI
Ensembl
PMID:25503409 GO_REF:0000107 MGI:5824492 NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (MGI:1100098|PMID:8988167) BHF-UCL PMID:8988167 MGI:1100098
G WNT3 Wnt family member 3 acts_upstream_of_or_within ISO (MGI:2450015|PMID:12569130) MGI PMID:12569130 MGI:2450015 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578068|PMID:15880584) Ensembl
Ensembl
MGI
PMID:15880584 GO_REF:0000107 MGI:3578068 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859075|PMID:10835630) Ensembl
Ensembl
MGI
RGD
PMID:10835630 PMID:19191224 GO_REF:0000107 MGI:1859075 RGD:2312786 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (MGI:3526782|PMID:15537664) MGI PMID:15537664 MGI:3526782 NCBI chr 5:81,789,915...81,792,725
Ensembl chr 5:81,789,997...81,792,639
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2681052|PMID:14623241) MGI
Ensembl
PMID:14623241 GO_REF:0000107 MGI:2681052 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249) MGI PMID:9847249 MGI:1314705 NCBI chr15:26,838,615...26,858,786
Ensembl chr15:26,834,670...26,858,803
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1270933|PMID:9664686) MGI
Ensembl
PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:1270933|PMID:9664686) MGI PMID:9664686 MGI:1270933 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (MGI:3767479|PMID:16079159) MGI PMID:16079159 MGI:3767479 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037623|PMID:15030763) Ensembl
Ensembl
MGI
PMID:15030763 GO_REF:0000107 MGI:3037623 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:3588609|PMID:16040801) MGI PMID:16040801 MGI:3588609 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3052394|PMID:15242796) MGI PMID:15242796 MGI:3052394 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G DLX5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181241|PMID:12112878)
(MGI:3794467|PMID:18326838)
Ensembl
Ensembl
MGI
PMID:12112878 PMID:18326838 GO_REF:0000107 MGI:2181241 MGI:3794467 NCBI chr14:22,080,351...22,085,188
Ensembl chr14:22,080,699...22,084,867
JBrowse link
G DLX6 distal-less homeobox 6 acts_upstream_of_or_within ISO (MGI:3794467|PMID:18326838)
(MGI:2181241|PMID:12112878)
MGI PMID:12112878 PMID:18326838 MGI:2181241 MGI:3794467 NCBI chr14:22,067,253...22,086,284
Ensembl chr14:22,067,149...22,220,799
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (MGI:3610248|PMID:16229832) MGI PMID:16229832 MGI:3610248 NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within
involved_in
ISO (MGI:81767|PMID:8684466)
(MGI:3052394|PMID:15242796)
(MGI:75252|PMID:7624797)
MGI
ParkinsonsUK-UCL
PMID:7624797 PMID:8684466 PMID:15242796 MGI:3052394 MGI:75252 MGI:81767 NCBI chr19:31,124,325...31,129,538 JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within ISO (MGI:1933664|PMID:11285249)
(MGI:1934650|PMID:11350121)
MGI PMID:11285249 PMID:11350121 MGI:1933664 MGI:1934650 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3056042|PMID:15328019) MGI
Ensembl
PMID:15328019 GO_REF:0000107 MGI:3056042 NCBI chr18:48,413,480...48,417,494
Ensembl chr18:48,413,187...48,416,977
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3714711|PMID:17576930) MGI
Ensembl
Ensembl
PMID:17576930 GO_REF:0000107 MGI:3714711 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3608262|PMID:16207751) MGI PMID:16207751 MGI:3608262 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063
JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513212|PMID:15542031) Ensembl
Ensembl
MGI
PMID:15542031 GO_REF:0000107 MGI:3513212 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
JBrowse link
G GJA5 gap junction protein alpha 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3581374|PMID:15923624) Ensembl
Ensembl
MGI
PMID:15923624 GO_REF:0000107 MGI:3581374 NCBI chr17:58,289,327...58,305,315
Ensembl chr17:58,289,327...58,305,315
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:2384366|PMID:12142027), (MGI:2445242|PMID:12435361), (MGI:2445270|PMID:12435627), (MGI:4367286|PMID:19809516), (MGI:52587|PMID:8387379)
(MGI:3851667|PMID:19422820)
(MGI:3608261|PMID:16284117)
MGI PMID:8387379 PMID:12142027 PMID:12435361 PMID:12435627 PMID:16284117 More... MGI:2384366 MGI:2445242 MGI:2445270 MGI:3608261 MGI:3851667 MGI:4367286 MGI:52587 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2665160|PMID:12808456) Ensembl
Ensembl
MGI
PMID:12808456 GO_REF:0000107 MGI:2665160 NCBI chr30:2,219,535...2,231,868
Ensembl chr30:2,222,898...2,225,418
JBrowse link
G HNF1A HNF1 homeobox A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1334099|PMID:10090727) Ensembl
Ensembl
MGI
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790
JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within ISO (MGI:2667742|PMID:12869760) MGI PMID:12869760 MGI:2667742 NCBI chr14:40,346,462...40,348,900
Ensembl chr14:40,346,462...40,354,396
JBrowse link
G HOXA11 homeobox A11 acts_upstream_of_or_within ISO (MGI:3043491|PMID:14668414) MGI PMID:14668414 MGI:3043491 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919
JBrowse link
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2667742|PMID:12869760) Ensembl
Ensembl
MGI
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr27:1,272,272...1,277,411
Ensembl chr27:1,273,131...1,323,370
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2667742|PMID:12869760) MGI
Ensembl
Ensembl
PMID:12869760 GO_REF:0000107 MGI:2667742 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:3043491|PMID:14668414) MGI PMID:14668414 MGI:3043491 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:2177382|PMID:11850178) MGI PMID:11850178 MGI:2177382 NCBI chr36:19,901,184...19,903,837 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334099|PMID:10090727) MGI
Ensembl
Ensembl
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019
JBrowse link
G LOC607080 musculoskeletal embryonic nuclear protein 1 ISO RGD PMID:14718386 RGD:1302424
G LRP4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (MGI:3619629|PMID:16207730)
(MGI:3703100|PMID:17119023)
MGI PMID:16207730 PMID:17119023 MGI:3619629 MGI:3703100 NCBI chr18:42,616,683...42,667,297
Ensembl chr18:42,616,426...42,665,794
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4458999|PMID:20359476) MGI PMID:20359476 MGI:4458999 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:12915312) UniProt PMID:12915312 NCBI chr23:46,697,755...46,941,300
Ensembl chr23:46,737,790...46,938,233
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISS CAFA
CAFA
GO_REF:0000024 NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within ISO (MGI:3580732|PMID:15930102)
(MGI:3851667|PMID:19422820)
MGI PMID:15930102 PMID:19422820 MGI:3580732 MGI:3851667 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:3580732|PMID:15930102)
(MGI:3851667|PMID:19422820)
MGI PMID:15930102 PMID:19422820 MGI:3580732 MGI:3851667 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3610505|PMID:16169548) MGI PMID:16169548 MGI:3610505 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G NOTCH2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:3610505|PMID:16169548) MGI PMID:16169548 MGI:3610505 NCBI chr17:56,854,825...57,020,157
Ensembl chr17:56,860,429...57,020,857
JBrowse link
G PBX1 PBX homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3629247|PMID:16672333) MGI
Ensembl
Ensembl
PMID:16672333 GO_REF:0000107 MGI:3629247 NCBI chr38:18,378,997...18,703,694
Ensembl chr38:18,418,093...18,703,497
JBrowse link
G PBX2 PBX homeobox 2 acts_upstream_of_or_within ISO (MGI:3629247|PMID:16672333) MGI PMID:16672333 MGI:3629247 NCBI chr12:1,577,639...1,582,609
Ensembl chr12:1,578,707...1,584,688
JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1306737|PMID:9729491), (MGI:1328643|PMID:9882503) Ensembl
Ensembl
MGI
PMID:9729491 PMID:9882503 GO_REF:0000107 MGI:1306737 MGI:1328643 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787
JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (MGI:1306737|PMID:9729491), (MGI:1328643|PMID:9882503) MGI PMID:9729491 PMID:9882503 MGI:1306737 MGI:1328643 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348
JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3610505|PMID:16169548) Ensembl
Ensembl
MGI
PMID:16169548 GO_REF:0000107 MGI:3610505 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532
JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (MGI:3610505|PMID:16169548) MGI PMID:16169548 MGI:3610505 NCBI chr 7:38,147,157...38,163,023
Ensembl chr 7:38,147,173...38,166,722
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:2152606|PMID:11784021)
(MGI:2135419|PMID:11389830)
MGI PMID:11389830 PMID:11784021 MGI:2135419 MGI:2152606 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G SALL4 spalt like transcription factor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3614736|PMID:16380715) Ensembl
Ensembl
MGI
PMID:16380715 GO_REF:0000107 MGI:3614736 NCBI chr24:37,941,498...37,959,713
Ensembl chr24:37,940,034...38,037,287
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3851667|PMID:19422820)
(MGI:2135419|PMID:11389830)
(MGI:3053241|PMID:15315763)
MGI
Ensembl
PMID:11389830 PMID:15315763 PMID:19422820 GO_REF:0000107 MGI:2135419 MGI:3053241 MGI:3851667 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SHOX2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3621617|PMID:16537395)
(MGI:3714677|PMID:17481601)
MGI
Ensembl
PMID:16537395 PMID:17481601 GO_REF:0000107 MGI:3621617 MGI:3714677 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:2445270|PMID:12435627) MGI PMID:12435627 MGI:2445270 NCBI chr 5:57,144,178...57,216,385
Ensembl chr 5:57,145,825...57,214,403
JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within
involved_in
ISO (MGI:2679409|PMID:14597661)
(MGI:3526745|PMID:15358670)
MGI
UniProt
PMID:14597661 PMID:15358670 MGI:2679409 MGI:3526745 NCBI chr14:34,786,296...34,791,495 JBrowse link
G SP9 Sp9 transcription factor involved_in ISO (MGI:3526745|PMID:15358670) UniProt PMID:15358670 MGI:3526745 NCBI chr36:18,401,003...18,404,874
Ensembl chr36:18,400,918...18,403,135
JBrowse link
G TBX4 T-box transcription factor 4 acts_upstream_of_or_within ISO (MGI:2660720|PMID:12736212) MGI PMID:12736212 MGI:2660720 NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3614736|PMID:16380715)
(MGI:2660722|PMID:12736217)
MGI
Ensembl
PMID:12736217 PMID:16380715 GO_REF:0000107 MGI:2660722 MGI:3614736 NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1335634|PMID:10227293)
(MGI:3794467|PMID:18326838)
MGI
Ensembl
PMID:10227293 PMID:18326838 GO_REF:0000107 MGI:1335634 MGI:3794467 NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:1934650|PMID:11350121)
(MGI:2384366|PMID:12142027)
(MGI:3042355|PMID:15030764)
MGI PMID:11350121 PMID:12142027 PMID:15030764 MGI:1934650 MGI:2384366 MGI:3042355
G UCP3 uncoupling protein 3 acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:3821640 NCBI chr21:24,272,522...24,290,304
Ensembl chr21:24,277,896...24,288,639
JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within ISO (MGI:5314316|PMID:22228095) MGI PMID:22228095 MGI:5314316 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1329804|PMID:10021340) MGI
Ensembl
PMID:10021340 GO_REF:0000107 MGI:1329804 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3052394|PMID:15242796) MGI
Ensembl
PMID:15242796 GO_REF:0000107 MGI:3052394 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI MGI:61278 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZD6 frizzled class receptor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5499279|PMID:23439395) MGI
Ensembl
Ensembl
PMID:23439395 GO_REF:0000107 MGI:5499279 NCBI chr13:4,732,541...4,771,294
Ensembl chr13:4,733,017...4,772,115
JBrowse link
G MSX1 msh homeobox 1 acts_upstream_of_or_within
involved_in
ISO (MGI:4948979|PMID:21465616)
(PMID:11369996)
(MGI:3688967|PMID:11369996)
MGI
BHF-UCL
PMID:11369996 PMID:21465616 MGI:3688967 MGI:4948979 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (MGI:4948979|PMID:21465616) MGI PMID:21465616 MGI:4948979 NCBI chr 4:38,002,724...38,007,407
Ensembl chr 4:38,002,428...38,007,407
JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in ISO (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228
JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225
JBrowse link
forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FMN1 formin 1 acts_upstream_of_or_within ISO (MGI:3717025|PMID:17554679) MGI PMID:17554679 MGI:3717025 NCBI chr30:1,782,726...2,215,449
Ensembl chr30:1,815,512...2,184,909
JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:65616|PMID:8145850) Ensembl
Ensembl
MGI
PMID:8145850 GO_REF:0000107 MGI:65616 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350864|PMID:10642795) MGI
Ensembl
Ensembl
PMID:10642795 GO_REF:0000107 MGI:1350864 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within ISO (MGI:1350864|PMID:10642795) MGI PMID:10642795 MGI:1350864 NCBI chr36:19,929,479...19,932,861 JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G RNF165 ring finger protein 165 acts_upstream_of_or_within ISO (MGI:5499270|PMID:23610558) MGI PMID:23610558 MGI:5499270 NCBI chr 7:44,834,006...44,939,538
Ensembl chr 7:44,840,099...44,940,619
JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3829797|PMID:19168674) MGI PMID:19168674 MGI:3829797 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (MGI:3829797|PMID:19168674) MGI PMID:19168674 MGI:3829797 NCBI chr 1:1,413,991...1,421,516
Ensembl chr 1:1,416,390...1,435,326
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:9207801) MGI PMID:9207801 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3527352|PMID:15621531)
(PMID:8988164), (PMID:8988165)
MGI
Ensembl
PMID:8988164 PMID:8988165 PMID:15621531 GO_REF:0000107 MGI:3527352 NCBI chr26:11,462,541...11,549,699
Ensembl chr26:11,463,653...11,506,446
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in ISS
IEA
UniProt
Ensembl
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:18,544,176...18,574,300
Ensembl chr12:18,544,446...18,572,902
JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859075|PMID:10835630) Ensembl
Ensembl
MGI
PMID:10835630 GO_REF:0000107 MGI:1859075 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI MGI:61157 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3621084|PMID:16556916) Ensembl
Ensembl
MGI
PMID:16556916 GO_REF:0000107 MGI:3621084 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G FMN1 formin 1 acts_upstream_of_or_within ISO (MGI:3717025|PMID:17554679) MGI PMID:17554679 MGI:3717025 NCBI chr30:1,782,726...2,215,449
Ensembl chr30:1,815,512...2,184,909
JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722565|PMID:17085896)
(MGI:65616|PMID:8145850)
Ensembl
Ensembl
MGI
PMID:8145850 PMID:17085896 GO_REF:0000107 MGI:3722565 MGI:65616 NCBI chr24:24,395,699...24,400,302
Ensembl chr24:24,395,263...24,399,928
JBrowse link
G HOTAIR HOX transcript antisense RNA acts_upstream_of_or_within
involved_in
ISO (MGI:5788088|PMID:25909911) MGI PMID:25909911 MGI:5788088 NCBI chr27:1,296,506...1,300,023 JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350864|PMID:10642795) MGI
Ensembl
Ensembl
PMID:10642795 GO_REF:0000107 MGI:1350864 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724
JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within ISO (MGI:1350864|PMID:10642795) MGI PMID:10642795 MGI:1350864 NCBI chr36:19,929,479...19,932,861 JBrowse link
G PITX1 paired like homeodomain 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1332284|PMID:10049363)
(MGI:3527352|PMID:15621531), (MGI:3689784|PMID:16989801)
(MGI:1333095|PMID:10101115)
MGI
Ensembl
PMID:10049363 PMID:10101115 PMID:15621531 PMID:16989801 GO_REF:0000107 MGI:1332284 MGI:1333095 MGI:3527352 MGI:3689784 NCBI chr11:23,069,731...23,075,085
Ensembl chr11:23,069,716...23,080,941
JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within ISO (MGI:1095757|PMID:9262482) MGI PMID:9262482 MGI:1095757 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G SALL1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (MGI:3829797|PMID:19168674) MGI PMID:19168674 MGI:3829797 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (MGI:3829797|PMID:19168674) MGI PMID:19168674 MGI:3829797 NCBI chr 1:1,413,991...1,421,516
Ensembl chr 1:1,416,390...1,435,326
JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in ISS
IEA
UniProt
UniProt
Ensembl
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr12:18,544,176...18,574,300
Ensembl chr12:18,544,446...18,572,902
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:1353858|PMID:10700192) MGI PMID:10700192 MGI:1353858
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859075|PMID:10835630) MGI
Ensembl
PMID:10835630 GO_REF:0000107 MGI:1859075 NCBI chr 5:19,082,594...19,284,360
Ensembl chr 5:19,087,154...19,267,628
JBrowse link
limb bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20940257) UniProt
Ensembl
PMID:20940257 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1309706|PMID:9784490) Ensembl
Ensembl
MGI
PMID:9784490 GO_REF:0000107 MGI:1309706 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within
involved_in
ISO
ISS
(MGI:1197797|PMID:9435295)
(MGI:1346744|PMID:10518547)
MGI
UniProt
PMID:9435295 PMID:10518547 GO_REF:0000024 MGI:1197797 MGI:1346744 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G PLXNA2 plexin A2 acts_upstream_of_or_within ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chr 7:6,863,518...7,049,301
Ensembl chr 7:6,863,663...7,049,250
JBrowse link
G SEMA3C semaphorin 3C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19666519) Ensembl
Ensembl
BHF-UCL
PMID:19666519 GO_REF:0000107 NCBI chr18:20,457,683...20,748,008
Ensembl chr18:20,459,925...20,635,276
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1928592|PMID:11118883) Ensembl
Ensembl
MGI
PMID:11118883 GO_REF:0000107 MGI:1928592 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:5285157|PMID:20596238) UniProt PMID:20596238 MGI:5285157
G SOX4 SRY-box transcription factor 4 involved_in ISO (MGI:5285157|PMID:20596238) UniProt PMID:20596238 MGI:5285157 NCBI chr35:20,098,783...20,101,357
Ensembl chr35:20,099,773...20,101,154
JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20940257) UniProt PMID:20940257 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G WNT3 Wnt family member 3 involved_in ISO (PMID:14872406) BHF-UCL PMID:14872406 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
G ZNF219 zinc finger protein 219 acts_upstream_of_or_within ISO (PMID:20940257) UniProt PMID:20940257 NCBI chr15:18,178,861...18,186,650
Ensembl chr15:18,180,901...18,192,773
JBrowse link
limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain involved_in ISO (MGI:6405577|PMID:31655293) MGI PMID:31655293 MGI:6405577 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4834113|PMID:20404326) MGI
Ensembl
Ensembl
PMID:20404326 GO_REF:0000107 MGI:4834113 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
JBrowse link
G SULF1 sulfatase 1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr29:18,709,406...18,885,248
Ensembl chr29:18,709,445...18,884,378
JBrowse link
limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1098911|PMID:9374397), (MGI:1314705|PMID:9847249)
(MGI:1314705|PMID:9847249)
MGI PMID:9374397 PMID:9847249 MGI:1098911 MGI:1314705 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G ASPH aspartate beta-hydroxylase acts_upstream_of_or_within ISO (MGI:2177999|PMID:11773073) MGI PMID:11773073 MGI:2177999 NCBI chr29:11,812,275...12,022,755
Ensembl chr29:11,814,554...12,022,680
JBrowse link
G BAK1 BCL2 antagonist/killer 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1929371|PMID:11163212) MGI
Ensembl
Ensembl
PMID:11163212 GO_REF:0000107 MGI:1929371 NCBI chr12:2,950,359...2,957,604
Ensembl chr12:2,948,364...2,957,018
JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1929371|PMID:11163212) MGI
Ensembl
PMID:11163212 GO_REF:0000107 MGI:1929371 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G CIBAR1 CBY1 interacting BAR domain containing 1 involved_in ISO (PMID:30395363)
(MGI:6304712|PMID:30395363)
UniProt PMID:30395363 MGI:6304712 NCBI chr29:38,604,389...38,630,482
Ensembl chr29:38,603,965...38,630,171
JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1334159|PMID:10100048) MGI
Ensembl
PMID:10100048 GO_REF:0000107 MGI:1334159 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G DIP2A disco interacting protein 2 homolog A acts_upstream_of_or_within ISO (MGI:4438783|PMID:20096683) MGI PMID:20096683 MGI:4438783 NCBI chr31:39,695,620...39,778,527
Ensembl chr31:39,686,465...39,777,484
JBrowse link
G EVX2 even-skipped homeobox 2 acts_upstream_of_or_within ISO (MGI:84613|PMID:8978698) MGI PMID:8978698 MGI:84613 NCBI chr36:19,887,095...19,891,772
Ensembl chr36:19,887,524...19,891,247
JBrowse link
G FBN2 fibrillin 2 acts_upstream_of_or_within ISO (MGI:1353858|PMID:10700192) MGI PMID:10700192 MGI:1353858 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1327513|PMID:9916808) MGI
Ensembl
PMID:9916808 GO_REF:0000107 MGI:1327513 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3056042|PMID:15328019)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:15328019 PMID:21873635 MGI:3056042 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FLVCR1 FLVCR heme transporter 1 acts_upstream_of_or_within ISO (MGI:3775000|PMID:18258918) MGI PMID:18258918 MGI:3775000 NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
ISO (PMID:18478223), (PMID:9354785)
(MGI:1095762|PMID:9268572)
UniProt
MGI
PMID:9268572 PMID:9354785 PMID:18478223 MGI:1095762 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (MGI:84613|PMID:8978698)
(MGI:2150573|PMID:11543619)
MGI PMID:8978698 PMID:11543619 MGI:2150573 MGI:84613 NCBI chr36:19,901,184...19,903,837 JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (MGI:86916|PMID:9097952) MGI PMID:9097952 MGI:86916 NCBI chr 3:91,517,225...91,534,593
Ensembl chr 3:91,522,035...91,534,593
JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within ISO (MGI:5635784|PMID:24009529) MGI PMID:24009529 MGI:5635784 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758
JBrowse link
G IQCE IQ motif containing E involved_in ISO (PMID:28488682) UniProt PMID:28488682 NCBI chr 6:14,538,693...14,579,095
Ensembl chr 6:14,532,181...14,577,435
JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (MGI:4461341|PMID:20589901) MGI PMID:20589901 MGI:4461341 NCBI chr 9:56,542,844...56,625,609
Ensembl chr 9:56,542,826...56,625,530
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (MGI:3653806|PMID:15537447) MGI PMID:15537447 MGI:3653806 NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3653806|PMID:15537447)
(MGI:3055483|PMID:15469977)
MGI PMID:15469977 PMID:15537447 MGI:3055483 MGI:3653806 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISO (PMID:23063620) UniProt PMID:23063620 NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (MGI:3795695|PMID:18519639) BHF-UCL PMID:18519639 MGI:3795695 NCBI chr 1:82,088,090...82,506,131
Ensembl chr 1:82,090,664...82,555,145
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic acts_upstream_of_or_within ISO (MGI:5013998|PMID:21553379) MGI PMID:21553379 MGI:5013998 NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892
JBrowse link
G PTCH1 patched 1 involved_in ISO (PMID:8681379) BHF-UCL PMID:8681379 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662
JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3716248|PMID:17558409) MGI
Ensembl
PMID:17558409 GO_REF:0000107 MGI:3716248 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G SIK3 SIK family kinase 3 acts_upstream_of_or_within ISO (MGI:5316542|PMID:22318228) MGI PMID:22318228 MGI:5316542 NCBI chr 5:16,623,756...16,733,259
Ensembl chr 5:16,527,504...16,733,243
JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within ISO (MGI:2653226|PMID:12668638) MGI PMID:12668638 MGI:2653226 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TBX4 T-box transcription factor 4 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3527352|PMID:15621531) UniProt
UniProt
MGI
PMID:15621531 GO_REF:0000024 MGI:3527352 NCBI chr 9:35,163,346...35,197,726
Ensembl chr 9:35,166,353...35,191,932
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4413372|PMID:19795512) MGI
Ensembl
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
post-embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler acts_upstream_of_or_within ISO (MGI:5568807|PMID:24386478) MGI PMID:24386478 MGI:5568807 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:6101307|PMID:24770645) MGI PMID:24770645 MGI:6101307 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718
JBrowse link
post-embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR23A microRNA mir-23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) MGI PMID:24101522 MGI:5516374 NCBI chr20:48,620,335...48,620,386
Ensembl chr20:48,620,323...48,620,397
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16237
    developmental process 6471
      anatomical structure morphogenesis 2855
        appendage morphogenesis 177
          antennal morphogenesis + 0
          apical ectodermal ridge formation + 0
          appendage segmentation + 0
          embryonic appendage morphogenesis + 145
          fin morphogenesis + 0
          imaginal disc-derived appendage morphogenesis + 0
          limb morphogenesis + 177
          post-embryonic appendage morphogenesis + 3
Path 2
Term Annotations click to browse term
  biological_process 16237
    developmental process 6471
      anatomical structure development 6003
        multicellular organism development 5460
          appendage development 209
            appendage morphogenesis 177
              antennal morphogenesis + 0
              apical ectodermal ridge formation + 0
              appendage segmentation + 0
              embryonic appendage morphogenesis + 145
              fin morphogenesis + 0
              imaginal disc-derived appendage morphogenesis + 0
              limb morphogenesis + 177
              post-embryonic appendage morphogenesis + 3
paths to the root