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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic heart tube development
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Accession:GO:0035050 term browser browse the term
Definition:The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field.


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embryonic heart tube development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISO (MGI:5909243|PMID:28854362), (MGI:5913613|PMID:28663440) RGD PMID:28663440 PMID:28854362 MGI:5909243 MGI:5913613 NCBI chr16:26,582,103...26,583,828 JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148567 (MGI:3773938|PMID:18231602)
Ensembl
RGD
PMID:18231602 GO_REF:0000107 MGI:3773938 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2176467|MGI:2686864 (MGI:3629000|PMID:16720879)
RGD PMID:16720879, PMID:21873635 MGI:3629000, RGD:13792537 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:3701373 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:3701373|PMID:16678147) RGD PMID:16678147 MGI:3701373 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443|MGI:2386265 (MGI:87488|PMID:9136932), (MGI:87489|PMID:9136933) RGD PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (MGI:2686766|PMID:14732399) RGD PMID:14732399 MGI:2686766 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gja5 gap junction protein, alpha 5 acts_upstream_of_or_within ISO MGI:2445466 (MGI:2686766|PMID:14732399), (MGI:5304955|PMID:22203979) RGD PMID:14732399 PMID:22203979 MGI:2686766 MGI:5304955 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:2153823 (MGI:1197800|PMID:9500551) RGD PMID:9500551 MGI:1197800 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:2449914 (MGI:3487182|PMID:15459110) RGD PMID:15459110 MGI:3487182 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G LOC100912649 uncharacterized LOC100912649 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2684189 (MGI:2682174|PMID:14500757) RGD PMID:14500757 MGI:2682174 NCBI chr10:86,101,560...86,145,271
Ensembl chr10:86,103,600...86,144,880
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO MGI:1888496 (MGI:3578574|PMID:15843414) RGD PMID:15843414 MGI:3578574 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in
acts_upstream_of_or_within
ISO (PMID:15649947)
(PMID:9545560)
RGD PMID:9545560 PMID:15649947 NCBI chr15:51,034,620...51,038,715
Ensembl chr15:51,034,620...51,038,704
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (MGI:5696764|PMID:25220058) RGD PMID:25220058 MGI:5696764 NCBI chr20:12,943,523...13,038,615
Ensembl chr20:12,944,786...13,038,431
JBrowse link
G Slc8a1 solute carrier family 8 member A1 acts_upstream_of_or_within ISO MGI:4849923 (MGI:4867054|PMID:21302256) RGD PMID:21302256 MGI:4867054 NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:103559 (MGI:3716256|PMID:17610846) RGD PMID:17610846 MGI:3716256 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO MGI:107543 (MGI:3716256|PMID:17610846) RGD PMID:17610846 MGI:3716256 NCBI chr 3:177,177,237...177,179,039
Ensembl chr 3:177,177,310...177,179,127
JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO MGI:3579836|MGI:97350 (MGI:3578574|PMID:15843414) RGD PMID:15843414 MGI:3578574 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO MGI:5538565 (MGI:5532232|PMID:23844108) RGD PMID:23844108 MGI:5532232 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
embryonic heart tube elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664) RGD PMID:15901664 MGI:3579960 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (MGI:1927045|PMID:11076684) RGD PMID:11076684 MGI:1927045 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (MGI:892786|PMID:9192865) RGD PMID:9192865 MGI:892786 NCBI chr 5:64,031,131...64,180,830
Ensembl chr 5:64,053,946...64,178,759
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5551355|PMID:24052814)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1927227 (MGI:892786|PMID:9192865)
Ensembl
RGD
PMID:9192865 GO_REF:0000107 MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Pifo primary cilia formation acts_upstream_of_or_within ISO MGI:4819764 (MGI:4819432|PMID:20643351) RGD PMID:20643351 MGI:4819432 NCBI chr 2:208,616,592...208,633,961
Ensembl chr 2:208,616,589...208,633,945
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:3783941|PMID:17234970) RGD PMID:17234970 MGI:3783941 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19506109)
Ensembl
RGD
PMID:19506109 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4354447|PMID:19609448)
Ensembl
RGD
PMID:19609448 GO_REF:0000107 MGI:4354447 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5551355|PMID:24052814)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Ryr2 ryanodine receptor 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:1267127|PMID:9628868)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9628868 GO_REF:0000024 GO_REF:0000107 MGI:1267127 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO (MGI:3579960|PMID:15901664) RGD PMID:15901664 MGI:3579960 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030901.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,387,789...108,393,442 JBrowse link
G Ahi1 Abelson helper integration site 1 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)
UniProt
RGD
PMID:21959375 GO_REF:0000024 MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Aplnr apelin receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:5584055|PMID:23603510)
Ensembl
RGD
PMID:23603510 GO_REF:0000107 MGI:5584055 NCBI chr 3:72,540,538...72,544,183
Ensembl chr 3:72,540,538...72,544,182
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655
JBrowse link
G Ccdc103 coiled-coil domain containing 103 involved_in ISO (PMID:22581229) RGD PMID:22581229 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Ccdc39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in IBA
ISO
PMID:21873635
(PMID:22693285)
RGD PMID:22693285, PMID:21873635 RGD:13792537 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO MGI:2179530 (MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:1346729 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (MGI:3574743|PMID:15750185) RGD PMID:15750185 MGI:3574743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cluap1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5523142 (MGI:5509110|PMID:23742838)
Ensembl
RGD
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA
(PMID:19944400), (PMID:19944405)
GO_REF:0000107
RGD
Ensembl
PMID:19944400 PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Eng endoglin involved_in ISO (MGI:1337912|PMID:10348742), (MGI:4368063|PMID:19703439) RGD PMID:10348742 PMID:19703439 MGI:1337912 MGI:4368063 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Eomes eomesodermin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1857843 (MGI:1340887|PMID:10411502) RGD PMID:10411502 MGI:1340887 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592
JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (MGI:3052615|PMID:15310850) RGD PMID:15310850 MGI:3052615 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (MGI:1201220|PMID:9486664) RGD PMID:9486664 MGI:1201220 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:2153823 (MGI:1197800|PMID:9500551) RGD PMID:9500551 MGI:1197800 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857639 (MGI:892134|PMID:9171826)
Ensembl
RGD
PMID:9171826 GO_REF:0000107 MGI:892134 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2179429 (MGI:3607736|PMID:14659802)
Ensembl
RGD
PMID:14659802 GO_REF:0000107 MGI:3607736 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO MGI:3829198 (MGI:3828200|PMID:18930042) RGD PMID:18930042 MGI:3828200 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2181727 (MGI:1337724|PMID:10330409) RGD PMID:10330409 MGI:1337724 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO MGI:2386948 (MGI:3628723|PMID:12522123) RGD PMID:12522123 MGI:3628723 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:3830899|PMID:16680724)
UniProt
RGD
PMID:16680724 GO_REF:0000024 MGI:3830899 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920
JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:177,048,607...177,173,729
Ensembl chr 1:177,048,655...177,173,995
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1927227 (MGI:3773736|PMID:16510504), (MGI:74918|PMID:7628699), (MGI:892786|PMID:9192865)
Ensembl
RGD
PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 MGI:3773736 MGI:74918 MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:106676 (MGI:3624254|PMID:16496285) RGD PMID:16496285 MGI:3624254 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Notch1 notch receptor 1 involved_in ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO MGI:3053092 (MGI:5646191|PMID:17884984) RGD PMID:17884984 MGI:5646191 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856
JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931), (PMID:20007846) RGD PMID:18371931 PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3777011 (MGI:3776202|PMID:17573777) RGD PMID:17573777 MGI:3776202 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5142377|PMID:11517919)
MGI:1857796 (MGI:1340887|PMID:10411502), (MGI:1346236|PMID:10500184)
Ensembl
RGD
PMID:10411502 PMID:10500184 PMID:11517919 GO_REF:0000107 MGI:1340887 MGI:1346236 MGI:5142377 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5142377|PMID:11517919)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11517919 GO_REF:0000024 GO_REF:0000107 MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
ISO (MGI:3716378|PMID:17655922)
MGI:2179440 (MGI:3716256|PMID:17610846)
RGD PMID:17610846 PMID:17655922 MGI:3716256 MGI:3716378 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2385465|MGI:2386742 (MGI:3603734|PMID:15929941) RGD PMID:15929941 MGI:3603734 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Tbr1 T-box brain transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:47,677,720...47,685,902
Ensembl chr 3:47,677,720...47,685,902
JBrowse link
G Tbx20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3604925|PMID:15843409)
MGI:3579849|MGI:3580099 (MGI:3578601|PMID:15843407), (MGI:3579960|PMID:15901664)
RGD PMID:15843407 PMID:15843409 PMID:15901664, PMID:21873635 MGI:3578601 MGI:3579960 MGI:3604925, RGD:13792537 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:85,032,799...85,049,331
Ensembl chr10:85,032,799...85,049,331
JBrowse link
G Tbx22 T-box transcription factor 22 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,731,738...78,782,542
Ensembl chr  X:78,769,419...78,782,542
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2655214|MGI:3769504 (MGI:3769096|PMID:17460765), (MGI:4412356|PMID:18723448)
RGD PMID:17460765 PMID:18723448, PMID:21873635 MGI:3769096 MGI:4412356, RGD:13792537 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tbx6 T-box transcription factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:3801267|PMID:17050629) RGD PMID:17050629 MGI:3801267 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4343479|MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in ISO (MGI:2157686|PMID:11440971) RGD PMID:11440971 MGI:2157686 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (MGI:3611726|PMID:16291790) RGD PMID:16291790 MGI:3611726 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1298218 (MGI:4413372|PMID:19795512)
Ensembl
RGD
PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (MGI:3056222|PMID:15384171), (MGI:3624254|PMID:16496285)
RGD PMID:9354794 PMID:15384171 PMID:16496285 MGI:3056222 MGI:3624254 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795
JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3039059|PMID:15042700) RGD PMID:15042700 MGI:3039059 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    developmental process 6790
      anatomical structure development 6263
        tube development 1220
          embryonic heart tube development 89
            embryonic heart tube dorsal/ventral pattern formation 0
            embryonic heart tube elongation 1
            embryonic heart tube left/right pattern formation 7
            embryonic heart tube morphogenesis + 71
            heart rudiment development + 0
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6790
      anatomical structure development 6263
        multicellular organism development 5744
          system development 5287
            animal organ development 4053
              heart development 692
                embryonic heart tube development 89
                  embryonic heart tube dorsal/ventral pattern formation 0
                  embryonic heart tube elongation 1
                  embryonic heart tube left/right pattern formation 7
                  embryonic heart tube morphogenesis + 71
                  heart rudiment development + 0
paths to the root