ONTOLOGY REPORT - ANNOTATIONS
Term: nucleosome organization
Accession: GO:0034728
browse the term
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes.
Synonyms: exact_synonym: nucleosome organisation
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CHD1
chromodomain helicase DNA binding protein 1
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 2:105,113,149...105,205,303
Ensembl chr 2:105,113,668...105,203,119
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CHD2
chromodomain helicase DNA binding protein 2
involved_in
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:85,980,759...86,107,886
Ensembl chr 7:85,983,837...86,106,938
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LIN54
lin-54 DREAM MuvB core complex component
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:27465258)
ARUK-UCL Ensembl
PMID:27465258
GO_REF:0000107
NCBI chr 8:135,330,868...135,398,274
Ensembl chr 8:135,330,919...135,398,263
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MCM3AP
minichromosome maintenance complex component 3 associated protein
involved_in
IEA
Ensembl
GO_REF:0000107
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SETD2
SET domain containing 2, histone lysine methyltransferase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,719...29,996,359
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SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr X:106,039,961...106,116,156
Ensembl chr X:106,039,969...106,116,139
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SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,576...84,224,871
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SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,917,633...44,940,273
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ANP32B
acidic nuclear phosphoprotein 32 family member B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:239,842,062...239,868,404
Ensembl chr 1:239,842,067...239,868,403
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ASF1A
anti-silencing function 1A histone chaperone
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:11897662)
MGI Ensembl
PMID:11897662
GO_REF:0000107
NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,415...43,214,913
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ASF1B
anti-silencing function 1B histone chaperone
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12842904)
Ensembl MGI
PMID:12842904
GO_REF:0000107
NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,679
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ATRX
ATRX chromatin remodeler
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:61,584,028...61,872,341
Ensembl chr X:61,584,848...61,872,287
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BAZ1A
bromodomain adjacent to zinc finger domain 1A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:64,969,626...65,069,969
Ensembl chr 7:64,969,640...65,069,889
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BRD2
bromodomain containing 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,152,043...25,162,578
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CABIN1
calcineurin binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,196...49,787,688
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CHAF1A
chromatin assembly factor 1 subunit A
involved_in
IEA IBA
Ensembl TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,709...74,411,825
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CHAF1B
chromatin assembly factor 1 subunit B
involved_in
IEA IBA
Ensembl TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,149...200,072,556
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CHRAC1
chromatin accessibility complex subunit 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:3,014,171...3,028,808
Ensembl chr 4:3,025,928...3,028,725
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DAXX
death domain associated protein
involved_in
IEA IBA
Ensembl TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,856...29,681,110
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DNAJC9
DnaJ heat shock protein family (Hsp40) member C9
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:76,064,598...76,070,301
Ensembl chr14:76,061,446...76,074,604
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GRWD1
glutamate rich WD repeat containing 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,852...53,859,385
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H1-0
H1.0 linker histone
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,966...10,041,067
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H1-1
H1.1 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:20,717,123...20,717,916
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H1-10
H1.10 linker histone
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr13:71,760,464...71,762,035
Ensembl chr13:71,760,467...71,761,839
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H1-2
H1.2 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356
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H1-3
H1.3 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:20,881,642...20,882,307
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H1-3
H1.3 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
Ensembl chr 7:20,862,952...20,882,307
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H1-5
H1.5 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:21,621,863...21,622,646
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H1-6
H1.6 linker histone, cluster member
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 7:20,774,135...20,777,244
Ensembl chr 7:20,775,859...20,776,497
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H1-8
H1.8 linker histone
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
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H2AB1
H2A.B variant histone 1
involved_in
ISO
(PMID:22795134)
UniProt
PMID:22795134
NCBI chr X:125,277,575...125,280,752
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H2AB2
H2A.B variant histone 2
involved_in
ISO
(PMID:22795134)
UniProt
PMID:22795134
NCBI chr X:125,537,401...125,540,026
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H2BC1
H2B clustered histone 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17261847)
Ensembl MGI
PMID:17261847
GO_REF:0000107
NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
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H3-3A
H3.3 histone A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,923,077...13,948,484
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H3-3B
H3.3 histone B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
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H3-4
H3.4 histone, cluster member
involved_in
ISO
(PMID:25615412) (PMID:20498094)
UniProt
PMID:20498094 PMID:25615412
NCBI chr 2:51,709,942...51,710,952
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H3C1
H3 clustered histone 1
involved_in
ISO
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
UniProt
PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
NCBI chr 7:20,720,283...20,721,839
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H3C15
H3 clustered histone 15
involved_in
ISO
(PMID:21636898), (PMID:25615412)
UniProt
PMID:21636898 PMID:25615412
NCBI chr 4:99,187,225...99,187,722
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H3C4
H3 clustered histone 4
involved_in
ISO
(PMID:25615412) (PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProt
PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,853,958...20,855,172
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H3C6
H3 clustered histone 6
involved_in
ISO
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735) (PMID:25615412)
UniProt
PMID:14718166 PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,872,628...20,875,404
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H4C11
H4 clustered histone 11
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:21,595,863...21,596,243
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H4C14
H4 clustered histone 14
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 4:99,208,554...99,208,961
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H4C20
H4 clustered histone 20
involved_in
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:21,588,850...21,589,244
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H4C3
H4 clustered histone 3
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:20,773,579...20,773,986
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H4C6
H4 clustered histone 6
involved_in
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:20,887,263...20,887,709
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H4C8
H4 clustered histone 8
involved_in
IBA IEA
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
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H4C9
H4 clustered histone 9
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:21,224,973...21,225,379
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HAT1
histone acetyltransferase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,207...78,079,608
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HIRA
histone cell cycle regulator
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,409
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HMGB1
high mobility group box 1
involved_in
IDA
(PMID:2465778)
AgBase
PMID:2465778
NCBI chr11:7,195,556...7,321,071
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HMGB2
high mobility group box 2
involved_in
IDA
(PMID:2465778)
AgBase
PMID:2465778
NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,101
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HP1BP3
heterochromatin protein 1 binding protein 3
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,555...79,007,889
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KAT6A
lysine acetyltransferase 6A
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr17:11,002,818...11,109,974
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KAT6B
lysine acetyltransferase 6B
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,404,136...77,597,673
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LOC100525798
nucleosome assembly protein 1-like 2
involved_in
IEA IBA
InterPro GO_Central TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr X:58,969,577...59,176,807
Ensembl chr X:58,966,830...58,972,091
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LOC100625034
testis-specific Y-encoded protein 4-like
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr Y:40,190,400...40,192,431
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LOC106506652
putative testis-specific Y-encoded-like protein 3
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr17:35,836,203...35,838,807
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MACROH2A1
macroH2A.1 histone
involved_in
IEA
UniProt InterPro
GO_REF:0000002 GO_REF:0000104
NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886
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MACROH2A2
macroH2A.2 histone
involved_in
IEA
InterPro UniProt
GO_REF:0000002 GO_REF:0000104
NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,229
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MCM2
minichromosome maintenance complex component 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10531422)
Ensembl MGI
PMID:10531422
GO_REF:0000107
NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,786
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NAA60
N-alpha-acetyltransferase 60, NatF catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,763,447...38,781,988
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NAP1L1
nucleosome assembly protein 1 like 1
involved_in
IEA IBA
InterPro TreeGrafter GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,052...39,363,711
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NAP1L3
nucleosome assembly protein 1 like 3
involved_in
IEA
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
NCBI chr X:76,147,190...76,149,848
Ensembl chr X:76,147,202...76,149,852
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NAP1L4
nucleosome assembly protein 1 like 4
involved_in
IEA IBA
InterPro GO_Central TreeGrafter Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,070,142...2,117,615
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NAP1L5
nucleosome assembly protein 1 like 5
involved_in
IEA
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
NCBI chr 8:130,364,566...130,365,464
Ensembl chr 8:130,364,566...130,365,464
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NASP
nuclear autoantigenic sperm protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,383
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NEFH
neurofilament heavy chain
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,568,088
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NPM1
nucleophosmin 1
involved_in
ISO
(PMID:11602260)
UniProt
PMID:11602260
NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,298...52,781,771
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PADI4
peptidyl arginine deiminase 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,889...75,966,293
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POLE3
DNA polymerase epsilon 3, accessory subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:254,033,378...254,036,224
Ensembl chr 1:254,033,385...254,035,978
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RBBP4
RB binding protein 4, chromatin remodeling factor
involved_in
ISO
(PMID:14718166)
GO_Central
PMID:14718166
NCBI chr 6:88,987,092...89,006,815
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RSF1
remodeling and spacing factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
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SART3
spliceosome associated factor 3, U4/U6 recycling protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,964...42,261,811
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SET
SET nuclear proto-oncogene
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 1:269,050,447...269,064,462
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SHPRH
SNF2 histone linker PHD RING helicase
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,916...19,695,245
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SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,576...84,224,871
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SMYD3
SET and MYND domain containing 3
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23752591)
Ensembl MGI
PMID:23752591
GO_REF:0000107
NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,189...19,019,642
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SOX9
SRY-box transcription factor 9
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
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SPTY2D1
SPT2 chromatin protein domain containing 1
involved_in
IEA IBA
Ensembl TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:40,581,816...40,604,040
Ensembl chr 2:40,582,984...40,604,038
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TSPYL1
TSPY like 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,249
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TSPYL2
TSPY like 2
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr X:45,909,688...45,916,859
Ensembl chr X:45,909,719...45,916,857
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TSPYL4
TSPY like 4
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 1:81,888,946...81,893,643
Ensembl chr 1:81,887,571...81,892,916
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TSPYL5
TSPY like 5
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,947...39,367,402
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UBN1
ubinuclein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,313...37,555,203
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ARID1A
AT-rich interaction domain 1A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,087...84,123,349
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ARID2
AT-rich interaction domain 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:76,637,385...76,800,155
Ensembl chr 5:76,636,967...76,797,043
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GRWD1
glutamate rich WD repeat containing 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,852...53,859,385
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H2AC25
H2A clustered histone 25
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:51,688,375...51,704,824
Ensembl chr 2:51,693,853...51,694,245
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H2BC1
H2B clustered histone 1
involved_in
ISO
(MGI:5502464|PMID:23884607)
UniProt
PMID:23884607
MGI:5502464
NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
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SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
ISO IEA
RGD Ensembl
PMID:9001244
GO_REF:0000107 RGD:634124
NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295
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SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048
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SMARCC1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:30,409,979...30,576,270
Ensembl chr13:30,409,983...30,601,441
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SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
involved_in
ISO
(PMID:8895581)
BHF-UCL
PMID:8895581
NCBI chr 5:21,563,426...21,586,790
Ensembl chr 5:21,563,400...21,586,737
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SMARCD1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,260...16,005,778
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SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:15,091,926...15,101,899
Ensembl chr12:15,091,729...15,101,899
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SMARCD3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:5,958,466...5,989,120
Ensembl chr18:5,958,506...5,989,114
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SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:21,784,410...21,807,170
Ensembl chr12:21,786,897...21,807,162
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SSRP1
structure specific recognition protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,227
G
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505
G
TNP1
transition protein 1
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all