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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA replication-independent chromatin organization
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Accession:GO:0034724 term browser browse the term
Definition:The formation or destruction of chromatin structures, occurring outside the context of DNA replication.
Synonyms:exact_synonym: DNA replication-independent nucleosome organisation



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DNA replication-independent chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
CENP-A containing chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,013,869...15,189,312
Ensembl chr17:15,014,058...15,189,304
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA
(PMID:19410544), (PMID:19410545)
PMID:21873635
RGD PMID:19410544 PMID:19410545 PMID:21873635 RGD:13792537 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:5441069 (MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971 PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250
JBrowse link
DNA replication-independent chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22391447)
UniProt
Ensembl
RGD
PMID:22391447 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166 PMID:21873635 GO_REF:0000002 GO_REF:0000107, RGD:13792537 NCBI chr20:12,893,314...13,015,357
Ensembl chr20:12,893,358...13,015,357
JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) RGD PMID:14718166
G H4f16 H4 histone 16 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
JBrowse link
G Hira histone cell cycle regulator involved_in IBA
ISO
PMID:21873635
(PMID:14718166)
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166) RGD PMID:14718166
G Ipo4 importin 4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:29,117,365...29,127,382
Ensembl chr15:29,117,365...29,127,285
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166
G LOC102548682 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,526,192...41,575,488 JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Ubn1 ubinuclein 1 involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr10:10,496,576...10,532,010
Ensembl chr10:10,496,576...10,532,010
JBrowse link
G Ubn2 ubinuclein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,165,278...67,251,562
Ensembl chr 4:67,166,346...67,230,491
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          chromatin organization 594
            DNA replication-independent chromatin organization 29
              DNA replication-independent chromatin assembly + 28
Path 2
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          organelle organization 3987
            chromosome organization 1036
              chromatin organization 594
                DNA replication-independent chromatin organization 29
                  DNA replication-independent chromatin assembly + 28
paths to the root