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ONTOLOGY REPORT - ANNOTATIONS

Term:sodium channel complex
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Accession:GO:0034706 term browser browse the term
Definition:An ion channel complex through which sodium ions pass.


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sodium channel complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCN1A sodium voltage-gated channel alpha subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:72,529,866...72,696,715
Ensembl chr15:72,529,875...72,678,066 		JBrowse link
G SCN1B sodium voltage-gated channel beta subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:44,597,461...44,607,488
Ensembl chr 6:44,597,482...44,607,481 		JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 part_of ISO (PMID:15272007) MGI PMID:15272007 NCBI chr13:23,336,143...23,424,755
Ensembl chr13:23,336,153...23,424,755 		JBrowse link
G SCN8A sodium voltage-gated channel alpha subunit 8 part_of ISO (PMID:15272007) MGI PMID:15272007 NCBI chr 5:16,977,468...17,173,831
Ensembl chr 5:16,977,700...17,169,543 		JBrowse link
G SCNN1A sodium channel epithelial 1 subunit alpha located_in
part_of		 ISO
IBA
IEA		 (PMID:16423824)
PMID:12136275
(PMID:21775436)		 ComplexPortal
GO_Central
TreeGrafter
Ensembl		 PMID:12136275 PMID:16423824 PMID:21775436 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:150521629 NCBI chr 5:64,287,529...64,312,917
Ensembl chr 5:64,285,015...64,313,612 		JBrowse link
G SCNN1B sodium channel epithelial 1 subunit beta located_in
part_of		 ISO
IBA
IEA		 (PMID:16423824)
PMID:12136275
(PMID:21775436)		 ComplexPortal
GO_Central
TreeGrafter
Ensembl		 PMID:12136275 PMID:16423824 PMID:21775436 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:150521629 NCBI chr 3:22,832,259...22,902,592
Ensembl chr 3:22,832,262...22,902,063 		JBrowse link
G SCNN1D sodium channel epithelial 1 subunit delta located_in
part_of		 ISO
IBA
IEA		 (PMID:16423824) ComplexPortal
GO_Central
TreeGrafter		 PMID:16423824 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:63,568,171...63,578,623 JBrowse link
G SCNN1G sodium channel epithelial 1 subunit gamma located_in
part_of		 ISO
IEA		 (PMID:21775436)
(PMID:16423824)
PMID:12136275		 ComplexPortal
TreeGrafter
Ensembl		 PMID:12136275 PMID:16423824 PMID:21775436 GO_REF:0000107 GO_REF:0000118 RGD:150521629 NCBI chr 3:22,977,940...23,013,384
Ensembl chr 3:22,977,947...23,013,384 		JBrowse link
G TRPM4 transient receptor potential cation channel subfamily M member 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:54,342,774...54,377,557
Ensembl chr 6:54,342,784...54,377,155 		JBrowse link
G UNC80 unc-80 homolog, NALCN channel complex subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr15:112,463,832...112,717,510
Ensembl chr15:112,491,523...112,714,876 		JBrowse link
kainate selective glutamate receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRIA4 glutamate ionotropic receptor AMPA type subunit 4 part_of ISO PMID:20107073 UniProt PMID:20107073 RGD:8554240 NCBI chr 9:35,442,060...35,803,989
Ensembl chr 9:35,442,091...35,805,357 		JBrowse link
G GRIK1 glutamate ionotropic receptor kainate type subunit 1 part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:192,877,707...193,296,954
Ensembl chr13:192,877,606...193,294,952 		JBrowse link
G GRIK2 glutamate ionotropic receptor kainate type subunit 2 part_of IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:68,052,086...68,680,448
Ensembl chr 1:68,057,538...68,679,256 		JBrowse link
G GRIK3 glutamate ionotropic receptor kainate type subunit 3 part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:92,880,297...93,128,048
Ensembl chr 6:92,880,303...93,128,569 		JBrowse link
G GRIK4 glutamate ionotropic receptor kainate type subunit 4 part_of IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:47,639,987...48,095,803
Ensembl chr 9:47,639,988...48,097,870 		JBrowse link
G GRIK5 glutamate ionotropic receptor kainate type subunit 5 part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:49,840,671...49,901,656
Ensembl chr 6:49,845,656...49,902,080 		JBrowse link
voltage-gated sodium channel complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1B calcium voltage-gated channel subunit alpha1 B part_of IBA GO_Central GO_REF:0000033
G CACNA1F calcium voltage-gated channel subunit alpha1 F part_of IBA GO_Central GO_REF:0000033 NCBI chr  X:43,250,449...43,284,458
Ensembl chr  X:43,251,370...43,283,990 		JBrowse link
G CACNA1G calcium voltage-gated channel subunit alpha1 G part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:26,838,633...26,912,344
Ensembl chr12:26,844,079...26,912,110 		JBrowse link
G CACNA1H calcium voltage-gated channel subunit alpha1 H part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 3:40,637,420...40,694,616
Ensembl chr 3:40,637,427...40,695,177 		JBrowse link
G CACNA1I calcium voltage-gated channel subunit alpha1 I part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:8,593,014...8,702,734
Ensembl chr 5:8,595,909...8,701,367 		JBrowse link
G SCN10A sodium voltage-gated channel alpha subunit 10 part_of IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr13:23,481,537...23,570,454
Ensembl chr13:23,481,255...23,570,379 		JBrowse link
G SCN11A sodium voltage-gated channel alpha subunit 11 part_of IEA
IBA		 UniProt
GO_Central
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr13:23,602,378...23,692,281
Ensembl chr13:23,602,977...23,692,220 		JBrowse link
G SCN1A sodium voltage-gated channel alpha subunit 1 part_of ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central
UniProt
InterPro		 PMID:15664695 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:1599536 NCBI chr15:72,529,866...72,696,715
Ensembl chr15:72,529,875...72,678,066 		JBrowse link
G SCN1B sodium voltage-gated channel beta subunit 1 part_of ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central
InterPro
Ensembl		 PMID:1375395 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:729871 NCBI chr 6:44,597,461...44,607,488
Ensembl chr 6:44,597,482...44,607,481 		JBrowse link
G SCN2A sodium voltage-gated channel alpha subunit 2 part_of ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
UniProt
InterPro		 PMID:2442385 PMID:15664695 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:1299025 RGD:1599536 NCBI chr15:71,864,753...71,999,219
Ensembl chr15:71,864,784...71,999,211 		JBrowse link
G SCN2B sodium voltage-gated channel beta subunit 2 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:45,484,994...45,502,578
Ensembl chr 9:45,484,998...45,498,465 		JBrowse link
G SCN3A sodium voltage-gated channel alpha subunit 3 part_of ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
InterPro
UniProt		 PMID:15664695 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:1599536 NCBI chr15:71,717,330...71,824,190
Ensembl chr15:71,717,334...71,824,160 		JBrowse link
G SCN3B sodium voltage-gated channel beta subunit 3 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:50,508,194...50,532,432
Ensembl chr 9:50,508,880...50,583,712 		JBrowse link
G SCN4A sodium voltage-gated channel alpha subunit 4 part_of IEA
IBA		 UniProt
TreeGrafter
GO_Central
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr12:15,001,356...15,048,092
Ensembl chr12:15,002,175...15,047,582 		JBrowse link
G SCN4B sodium voltage-gated channel beta subunit 4 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 9:45,451,473...45,475,606 JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 part_of IEA
IBA		 UniProt
TreeGrafter
GO_Central
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr13:23,336,143...23,424,755
Ensembl chr13:23,336,153...23,424,755 		JBrowse link
G SCN7A sodium voltage-gated channel alpha subunit 7 part_of
NOT|part_of		 IEA
ISO
IBA		 PMID:9001394 UniProt
UniProt
TreeGrafter
GO_Central
InterPro		 PMID:9001394 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:61747 NCBI chr15:72,946,147...73,026,656
Ensembl chr15:72,945,288...73,026,656 		JBrowse link
G SCN8A sodium voltage-gated channel alpha subunit 8 part_of ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
Ensembl
InterPro
UniProt		 PMID:15664695 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1599536 NCBI chr 5:16,977,468...17,173,831
Ensembl chr 5:16,977,700...17,169,543 		JBrowse link
G SCN9A sodium voltage-gated channel alpha subunit 9 part_of ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
InterPro
UniProt		 PMID:15664695 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:1599536 NCBI chr15:72,745,706...72,912,352
Ensembl chr15:72,748,705...72,912,382 		JBrowse link
G SLC9C1 solute carrier family 9 member C1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr13:147,517,985...147,612,667
Ensembl chr13:147,517,663...147,602,805 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18700
    protein-containing complex 6005
      membrane protein complex 1267
        transmembrane transporter complex 422
          monoatomic ion channel complex 326
            cation channel complex 197
              sodium channel complex 32
                kainate selective glutamate receptor complex 6
                voltage-gated sodium channel complex 20
Path 2
Term Annotations click to browse term
  cellular_component 18700
    cellular anatomical entity 18479
      membrane 10015
        membrane protein complex 1267
          transmembrane transporter complex 422
            monoatomic ion channel complex 326
              cation channel complex 197
                sodium channel complex 32
                  kainate selective glutamate receptor complex 6
                  voltage-gated sodium channel complex 20
paths to the root