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ONTOLOGY REPORT - ANNOTATIONS

Term:tooth mineralization
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Accession:GO:0034505 term browser browse the term
Definition:The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentin and cementum.
Synonyms:exact_synonym: tooth calcification


show annotations for term's descendants           Sort by:
tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked involved_in ISO
IEA		 (PMID:1483698)
GO_REF:0000107
(PMID:11406633)		 RGD
Ensembl		 PMID:1483698 PMID:11406633 GO_REF:0000107 NCBI chr  X:28,648,803...28,660,099
Ensembl chr  X:25,076,362...25,087,660 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO
IEA		 (PMID:17118335)
GO_REF:0000107		 RGD
Ensembl		 PMID:17118335 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:5607149 (PMID:29533727) RGD PMID:29533727 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Tspear thrombospondin-type laminin G domain and EAR repeats involved_in ISO
IEA		 (PMID:27736875)
GO_REF:0000107		 RGD
Ensembl		 PMID:27736875 GO_REF:0000107 NCBI chr20:10,771,806...10,837,419
Ensembl chr20:10,772,219...10,943,914 		JBrowse link
cementum mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated IEP RGD PMID:17043865 RGD:2316162 NCBI chr 5:155,234,770...155,289,785
Ensembl chr 5:149,951,409...150,006,446 		JBrowse link
G Ankh ANKH inorganic pyrophosphate transport regulator involved_in IEA
ISO		 GO_REF:0000107
MGI:3608932|MGI:3785162 (PMID:31059863)		 Ensembl
RGD		 PMID:31059863 GO_REF:0000107 NCBI chr 2:79,883,350...80,011,222
Ensembl chr 2:78,153,026...78,280,187 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1915401|MGI:2153568|MGI:3608932|MGI:3785162 (PMID:31059863) RGD PMID:31059863 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO
IEA		 MGI:3608932|MGI:3785162 (PMID:31059863)
GO_REF:0000107		 RGD
Ensembl		 PMID:31059863 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in ISO (PMID:25263524) RGD PMID:25263524 NCBI chr17:81,992,284...82,014,676
Ensembl chr17:77,083,740...77,106,073 		JBrowse link
G Sp7 Sp7 transcription factor involved_in ISO
IEA		 MGI:1915401|MGI:3608932|MGI:3785162|MGI:97370 (PMID:31059863)
GO_REF:0000107		 RGD
Ensembl		 PMID:31059863 GO_REF:0000107 NCBI chr 7:135,363,193...135,373,376
Ensembl chr 7:133,484,609...133,494,847 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO
IEA		 MGI:2153568|MGI:97370 (PMID:31059863)
GO_REF:0000107		 RGD
Ensembl		 PMID:31059863 GO_REF:0000107 NCBI chr 2:251,590,653...251,705,991
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
dentin mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA		 MGI:1856973 (PMID:23174213)
GO_REF:0000107		 RGD
Ensembl		 PMID:23174213 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked involved_in ISO
IEA
IBA		 (PMID:1916828)
GO_REF:0000107
(PMID:26403673)
GO_REF:0000033
(PMID:21653221)		 RGD
Ensembl
GO_Central		 PMID:1916828 PMID:21653221 PMID:26403673 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:28,648,803...28,660,099
Ensembl chr  X:25,076,362...25,087,660 		JBrowse link
G Cftr CF transmembrane conductance regulator IMP RGD PMID:31942562 RGD:126928119 NCBI chr 4:47,422,084...47,694,646
Ensembl chr 4:46,560,885...46,728,756 		JBrowse link
G Cnnm4 cyclin and CBS domain divalent metal cation transport mediator 4 acts_upstream_of_or_within ISO
IEA		 (PMID:24339795)
GO_REF:0000107		 RGD
Ensembl		 PMID:24339795 GO_REF:0000107 NCBI chr 9:38,711,726...38,750,942
Ensembl chr 9:38,711,710...38,750,942 		JBrowse link
G Fam20a FAM20A, golgi associated secretory pathway pseudokinase involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:21549343), (PMID:21990045), (PMID:23468644)
GO_REF:0000107
MGI:5432376 (PMID:22732358)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:21549343 PMID:21990045 PMID:22732358 PMID:23468644 GO_REF:0000033 GO_REF:0000107 NCBI chr10:95,136,799...95,197,176
Ensembl chr10:94,642,850...94,697,672 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:5432377 (PMID:22732358)		 GO_Central
Ensembl
RGD		 PMID:22732358 GO_REF:0000033 GO_REF:0000107 NCBI chr12:20,940,654...20,999,072
Ensembl chr12:15,826,871...15,884,543 		JBrowse link
G Foxo1 forkhead box O1 IEP RGD PMID:25183529 RGD:10044263 NCBI chr 2:138,462,974...138,541,420
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO
IEA		 MGI:1926484 (PMID:23264742)
GO_REF:0000107		 RGD
Ensembl		 PMID:23264742 GO_REF:0000107 NCBI chr 3:65,454,964...65,579,179
Ensembl chr 3:45,048,044...45,121,671 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1926381 (PMID:10742104)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO
IEA		 MGI:3814719 (PMID:18703497)
GO_REF:0000107		 RGD
Ensembl		 PMID:18703497 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha acts_upstream_of_or_within ISO
IEA		 MGI:1857774 (PMID:19320717)
GO_REF:0000107		 RGD
Ensembl		 PMID:19320717 GO_REF:0000107 NCBI chr 7:118,712,261...118,780,723
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Rogdi rogdi atypical leucine zipper acts_upstream_of_or_within ISO
IEA		 (PMID:38172607)
GO_REF:0000107		 RGD
Ensembl		 PMID:38172607 GO_REF:0000107 NCBI chr10:10,567,834...10,572,453
Ensembl chr10:10,567,834...10,572,452 		JBrowse link
G Stim1 stromal interaction molecule 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24621671)		 UniProt
RGD		 PMID:24621671 GO_REF:0000024 NCBI chr 1:166,067,450...166,230,733
Ensembl chr 1:156,656,013...156,818,363 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179136 (PMID:19233155)		 UniProt
RGD		 PMID:19233155 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA		 MGI:1856973 (PMID:23174213)
GO_REF:0000107		 RGD
Ensembl		 PMID:23174213 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO MGI:4363147|MGI:5913851 (PMID:25008349), (PMID:26247047) RGD PMID:25008349 PMID:26247047 NCBI chr 8:83,718,897...83,902,128
Ensembl chr 8:74,838,318...75,018,229 		JBrowse link
negative regulation of tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspn asporin involved_in ISO
IEA		 (PMID:17522060)
GO_REF:0000107		 RGD
Ensembl		 PMID:17522060 GO_REF:0000107 NCBI chr17:15,079,910...15,104,369
Ensembl chr17:15,080,639...15,104,041 		JBrowse link
G Bcor BCL6 co-repressor involved_in ISO
IEA		 (PMID:19578371)
GO_REF:0000107		 RGD
Ensembl		 PMID:19578371 GO_REF:0000107 NCBI chr  X:13,282,431...13,402,254
Ensembl chr  X:10,687,732...10,729,613 		JBrowse link
positive regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amtn amelotin involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:25407797)
GO_REF:0000033
GO_REF:0000002		 UniProt
Ensembl
RGD
GO_Central
InterPro		 PMID:25407797 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:19,648,624...19,661,181
Ensembl chr14:19,648,625...19,661,181 		JBrowse link
G Cftr CF transmembrane conductance regulator involved_in IEA
ISO		 GO_REF:0000107
(PMID:26403673)		 Ensembl
RGD		 PMID:26403673 GO_REF:0000107 NCBI chr 4:47,422,084...47,694,646
Ensembl chr 4:46,560,885...46,728,756 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:16014627) RGD PMID:16014627 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Enam enamelin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3796583 (PMID:24603688)		 GO_Central
RGD		 PMID:24603688 GO_REF:0000033 NCBI chr14:19,840,773...19,865,476
Ensembl chr14:19,556,729...19,581,425 		JBrowse link
G Odaph odontogenesis associated phosphoprotein involved_in ISO
IBA
IEA
ISS		 (PMID:22901946)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:22901946 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:16,071,835...16,080,151
Ensembl chr14:16,073,058...16,080,129 		JBrowse link
G Slc4a2 solute carrier family 4 member 2 involved_in ISO (PMID:26403673) RGD PMID:26403673 NCBI chr 4:11,628,860...11,646,961
Ensembl chr 4:10,736,425...10,752,965 		JBrowse link
positive regulation of tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO
ISS		 (PMID:19578371)
GO_REF:0000024		 RGD
UniProt		 PMID:19578371 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Wnt6 Wnt family member 6 involved_in ISO
IEA		 (PMID:20113781)
GO_REF:0000107		 RGD
Ensembl		 PMID:20113781 GO_REF:0000107 NCBI chr 9:83,778,552...83,792,186
Ensembl chr 9:76,329,882...76,343,523 		JBrowse link
regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:20102707) RGD PMID:20102707 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 acts_upstream_of_or_within ISO (PMID:16014627) RGD PMID:16014627 NCBI chr14:5,833,111...5,867,154
Ensembl chr14:5,528,431...5,539,323 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of ISO
IEA		 MGI:7505608 (PMID:30243146), (PMID:31336344)
GO_REF:0000107		 RGD
Ensembl		 PMID:30243146 PMID:31336344 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure development 6646
        tissue development 2321
          biomineral tissue development 189
            tooth mineralization 36
              cementum mineralization 7
              dentin mineralization 1
              enamel mineralization + 23
              negative regulation of tooth mineralization + 2
              positive regulation of tooth mineralization + 8
              regulation of tooth mineralization + 13
Path 2
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure development 6646
        anatomical structure morphogenesis 3017
          animal organ morphogenesis 1174
            odontogenesis 154
              tooth mineralization 36
                cementum mineralization 7
                dentin mineralization 1
                enamel mineralization + 23
                negative regulation of tooth mineralization + 2
                positive regulation of tooth mineralization + 8
                regulation of tooth mineralization + 13
paths to the root