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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule biosynthetic process
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Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis


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acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) RGD PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
adenosine 5'-(hexahydrogen pentaphosphate) catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,540,036...17,541,296
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt11 nudix hydrolase 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,171,510...17,215,108
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt3 nudix hydrolase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,155,744...7,208,292
Ensembl chr20:7,155,748...7,208,292
JBrowse link
G Nudt4 nudix hydrolase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:36,643,916...36,660,334
Ensembl chr 7:36,643,916...36,660,141
JBrowse link
adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto ISO
IEA
MGI:MGI:3522017 (MGI:MGI:3770326|PMID:16547283)
GO_REF:0000107
RGD
Ensembl
PMID:16547283 GO_REF:0000107, MGI:MGI:3770326 NCBI chr 8:95,969,002...96,012,733
Ensembl chr 8:95,968,652...96,012,696
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 TAS RGD PMID:9291127 RGD:632203 NCBI chr 1:175,585,301...175,630,479
Ensembl chr 1:175,586,097...175,630,467
JBrowse link
G Nt5e 5' nucleotidase, ecto IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
MGI:MGI:3522017 (MGI:MGI:3770326|PMID:16547283)
Ensembl
RGD
PMID:16547283, PMID:21414400, PMID:21873635 GO_REF:0000107, MGI:MGI:3770326, RGD:5134346, RGD:13792537 NCBI chr 8:95,969,002...96,012,733
Ensembl chr 8:95,968,652...96,012,696
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde4a phosphodiesterase 4A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:22,189,533...22,234,036
Ensembl chr 8:22,189,600...22,233,748
JBrowse link
G Pde4b phosphodiesterase 4B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:121,759,236...122,136,814
Ensembl chr 5:121,952,977...122,136,814
JBrowse link
G Pde4c phosphodiesterase 4C IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:20,442,305...20,466,386
Ensembl chr16:20,442,609...20,460,959
Ensembl chr16:20,442,609...20,460,959
JBrowse link
G Pde4d phosphodiesterase 4D IEA
IBA
ISO
GO_REF:0000041
PMID:21873635
(PMID:20819076)
UniProt
RGD
PMID:20819076, PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 2:40,219,999...41,468,551
Ensembl chr 2:40,554,146...41,464,264
JBrowse link
G Pde7a phosphodiesterase 7A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:104,042,124...104,134,101
Ensembl chr 2:104,045,811...104,134,101
JBrowse link
G Pde8a phosphodiesterase 8A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:143,036,083...143,160,395
Ensembl chr 1:143,036,218...143,159,433
JBrowse link
G Pde8b phosphodiesterase 8B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:24,718,548...24,955,533
Ensembl chr 2:24,719,976...24,923,128
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde1a phosphodiesterase 1A IMP RGD PMID:16514069 RGD:2312521 NCBI chr 3:66,803,247...67,263,658
Ensembl chr 3:66,803,247...66,885,094
JBrowse link
G Pde2a phosphodiesterase 2A IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:4420377|PMID:19632989)
(PMID:19828435)
Ensembl
RGD
PMID:19632989, PMID:19828435, PMID:21873635 GO_REF:0000107, MGI:MGI:4420377, RGD:13792537 NCBI chr 1:166,534,643...166,626,158
Ensembl chr 1:166,534,643...166,626,158
JBrowse link
G Pde5a phosphodiesterase 5A ISO
IEA
(MGI:MGI:2450821|PMID:12554648)
GO_REF:0000107
GO_REF:0000041
RGD
Ensembl
UniProt
PMID:12554648 GO_REF:0000041, GO_REF:0000107, MGI:MGI:2450821 NCBI chr 2:226,899,604...227,044,916
Ensembl chr 2:226,900,619...227,041,576
JBrowse link
G Pde9a phosphodiesterase 9A IEA
IBA
ISO
ISS
GO_REF:0000041
PMID:21873635
(MGI:MGI:1266874|PMID:9624145), (MGI:MGI:5634842|PMID:25799991)
GO_REF:0000024
(PMID:25799991)
UniProt
RGD
PMID:9624145, PMID:25799991, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:MGI:1266874, MGI:MGI:5634842, RGD:13792537 NCBI chr20:10,123,624...10,216,325
Ensembl chr20:10,123,651...10,216,548
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 IBA
ISO
PMID:21873635
(MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520)
RGD PMID:11415433, PMID:18799520, PMID:21873635 MGI:MGI:2137102, MGI:MGI:6450264, RGD:13792537 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
cyclic nucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:88,490,798...88,497,357
Ensembl chr10:88,490,798...88,497,356
JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:MGI:1857117|MGI:MGI:2155977|MGI:MGI:2683027 (MGI:MGI:2155238|PMID:9478961), (MGI:MGI:3619310|PMID:14607964), (MGI:MGI:72798|PMID:7731963), (MGI:MGI:74163|PMID:7670465), (MGI:MGI:76875|PMID:7592575) RGD PMID:7592575, PMID:7670465, PMID:7731963, PMID:9478961, PMID:14607964 MGI:MGI:2155238, MGI:MGI:3619310, MGI:MGI:72798, MGI:MGI:74163, MGI:MGI:76875 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Nudt1 nudix hydrolase 1 ISO
ISS
(PMID:10373420)
GO_REF:0000024
RGD
UniProt
PMID:10373420 GO_REF:0000024 NCBI chr12:16,391,578...16,398,771
Ensembl chr12:16,391,578...16,395,029
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:24141705)
(MGI:MGI:5828027|PMID:27920203)
RGD PMID:24141705, PMID:27920203 MGI:MGI:5828027 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
ISS
(PMID:24467396)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24467396, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
deoxyribonucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 IDA
IBA
ISO
PMID:17234634
PMID:21873635
(PMID:25108359)
RGD PMID:25108359, PMID:17234634, PMID:21873635 RGD:8553712, RGD:13792537 NCBI chr 9:16,845,764...16,848,514
Ensembl chr 9:16,845,525...16,848,503
JBrowse link
deoxyribonucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:123,209,611...123,221,266
Ensembl chr 3:123,209,608...123,221,269
JBrowse link
deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:171,748,254...171,826,414
Ensembl chr 4:171,748,273...171,826,409
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (MGI:MGI:1353788|PMID:10681516) RGD PMID:10681516 MGI:MGI:1353788 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:23601106), (PMID:26294762) RGD PMID:23601106, PMID:26294762 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix hydrolase 1 ISO
ISS
(MGI:MGI:77076|PMID:7592783)
(PMID:10373420), (PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:7592783, PMID:10373420, PMID:22556419 GO_REF:0000024, MGI:MGI:77076 NCBI chr12:16,391,578...16,398,771
Ensembl chr12:16,391,578...16,395,029
JBrowse link
G Nudt15 nudix hydrolase 15 ISO
IBA
(PMID:22556419)
PMID:21873635
RGD PMID:22556419, PMID:21873635 RGD:13792537 NCBI chr15:55,417,774...55,456,698
Ensembl chr15:55,419,502...55,456,698
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO
IBA
(PMID:24217394)
PMID:21873635
RGD PMID:24217394, PMID:21873635 RGD:13792537 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
diadenosine hexaphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,540,036...17,541,296
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt11 nudix hydrolase 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,171,510...17,215,108
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt3 nudix hydrolase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,155,744...7,208,292
Ensembl chr20:7,155,748...7,208,292
JBrowse link
G Nudt4 nudix hydrolase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:36,643,916...36,660,334
Ensembl chr 7:36,643,916...36,660,141
JBrowse link
diadenosine pentaphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,540,036...17,541,296
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt11 nudix hydrolase 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,171,510...17,215,108
Ensembl chr  X:17,540,458...17,540,952
Ensembl chr  X:17,540,458...17,540,952
JBrowse link
G Nudt3 nudix hydrolase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,155,744...7,208,292
Ensembl chr20:7,155,748...7,208,292
JBrowse link
G Nudt4 nudix hydrolase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:36,643,916...36,660,334
Ensembl chr 7:36,643,916...36,660,141
JBrowse link
diadenosine triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fhit fragile histidine triad diadenosine triphosphatase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16359767, PMID:21873635 RGD:2289929, RGD:13792537 NCBI chr15:15,697,292...16,862,873 JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO MGI:MGI:96622 (MGI:MGI:5009783|PMID:20081199) RGD PMID:20081199 MGI:MGI:5009783 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:MGI:2388903|PMID:12234672) RGD PMID:12234672 MGI:MGI:2388903 NCBI chr10:46,216,494...46,244,478
Ensembl chr10:46,216,884...46,243,077
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dut deoxyuridine triphosphatase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:3032103, PMID:21873635, PMID:1315924 RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link
flavin adenine dinucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vcp valosin-containing protein ISO (PMID:23498975) RGD PMID:23498975 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
GMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmps guanine monophosphate synthase IDA
ISO
IBA
IEA
(PMID:8089153)
PMID:21873635
GO_REF:0000104
GO_REF:0000002
GO_REF:0000041
RGD
UniProt
InterPro
PMID:8089153, PMID:3436958, PMID:21873635 GO_REF:0000002, GO_REF:0000041, GO_REF:0000104, RGD:1599004, RGD:13792537 NCBI chr 2:154,555,967...154,590,662
Ensembl chr 2:154,555,871...154,590,662
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
ISS
(PMID:19527031)
GO_REF:0000024
RGD
UniProt
PMID:19527031 GO_REF:0000024 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT ISO (PMID:21054786) RGD PMID:21054786 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
GMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
GTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Decr2 2,4-dienoyl-CoA reductase 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme5 NME/NM23 family member 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195
JBrowse link
G Nme7 NME/NM23 family member 7 IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO
IBA
ISS
(PMID:8894685)
PMID:21873635
MGI:MGI:1857117|MGI:MGI:2681791|MGI:MGI:2683027 (MGI:MGI:1095761|PMID:9272950), (MGI:MGI:3531253|PMID:8663040), (MGI:MGI:3640719|PMID:10720488), (MGI:MGI:3808984|PMID:2015347), (MGI:MGI:4835158|PMID:8672487), (MGI:MGI:49990|PMID:1618849), (MGI:MGI:72798|PMID:7731963), (MGI:MGI:76875|PMID:7592575), (MGI:MGI:83255|PMID:8894685)
GO_REF:0000024
RGD
UniProt
PMID:1618849, PMID:2015347, PMID:7592575, PMID:7731963, PMID:8663040, PMID:8672487, PMID:8894685, PMID:9272950, PMID:10720488, PMID:21873635 GO_REF:0000024, MGI:MGI:1095761, MGI:MGI:3531253, MGI:MGI:3640719, MGI:MGI:3808984, MGI:MGI:4835158, MGI:MGI:49990, MGI:MGI:72798, MGI:MGI:76875, MGI:MGI:83255, RGD:13792537 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adal adenosine deaminase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,091,696...113,109,841
Ensembl chr 3:113,102,090...113,108,654
JBrowse link
G Ak1 adenylate kinase 1 IDA RGD PMID:19049516 RGD:5134369 NCBI chr 3:11,652,143...11,659,135 JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase ISO MGI:MGI:4942407 (MGI:MGI:5009783|PMID:20081199) RGD PMID:20081199 MGI:MGI:5009783 NCBI chr 3:123,209,611...123,221,266
Ensembl chr 3:123,209,608...123,221,269
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase ISO
ISS
IBA
(MGI:MGI:5501374|PMID:23746352)
GO_REF:0000024
(PMID:10417274), (PMID:10455107), (PMID:15003260)
PMID:21873635
RGD
UniProt
PMID:10417274, PMID:10455107, PMID:15003260, PMID:23746352, PMID:21873635 GO_REF:0000024, MGI:MGI:5501374, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
NAD catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Art2b ADP-ribosyltransferase 2b ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:166,665,029...166,685,097
Ensembl chr 1:166,667,169...166,677,026
JBrowse link
G Nudt12 nudix hydrolase 12 ISO
IBA
(PMID:12790796)
PMID:21873635
RGD PMID:12790796, PMID:21873635 RGD:13792537 NCBI chr 9:105,680,603...105,693,374
Ensembl chr 9:105,680,670...105,693,357
JBrowse link
G Nudt17 nudix hydrolase 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,831,546...198,836,191
Ensembl chr 2:198,831,546...198,834,925
JBrowse link
G Sarm1 sterile alpha and TIR motif containing 1 ISO (PMID:25908823), (PMID:27671644), (PMID:28334607), (PMID:31128467), (PMID:31439792), (PMID:31439793)
(MGI:MGI:6114587|PMID:28334607), (MGI:MGI:6206974|PMID:27735788)
RGD PMID:25908823, PMID:27671644, PMID:27735788, PMID:28334607, PMID:31128467, PMID:31439792, PMID:31439793 MGI:MGI:6114587, MGI:MGI:6206974 NCBI chr10:65,742,343...65,766,050
Ensembl chr10:65,742,343...65,766,050
JBrowse link
NADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 ISO
IBA
(PMID:12790796)
PMID:21873635
RGD PMID:12790796, PMID:21873635 RGD:13792537 NCBI chr 9:105,680,603...105,693,374
Ensembl chr 9:105,680,670...105,693,357
JBrowse link
G Nudt13 nudix hydrolase 13 ISO (MGI:MGI:6368098|PMID:28755312) RGD PMID:28755312 MGI:MGI:6368098 NCBI chr15:4,434,341...4,454,871
Ensembl chr15:4,434,313...4,454,958
JBrowse link
G Nudt17 nudix hydrolase 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,831,546...198,836,191
Ensembl chr 2:198,831,546...198,834,925
JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 ISO (MGI:MGI:3043501|PMID:15130768) RGD PMID:15130768 MGI:MGI:3043501 NCBI chr 8:129,201,000...129,232,436
Ensembl chr 8:129,201,669...129,232,677
JBrowse link
nucleoside phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 ISO (PMID:26238318), (PMID:26878724) RGD PMID:26238318, PMID:26878724 NCBI chr15:55,417,774...55,456,698
Ensembl chr15:55,419,502...55,456,698
JBrowse link
nucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
ISS
(PMID:24467396)
PMID:21873635
GO_REF:0000024
(MGI:MGI:3844778|PMID:19220460)
RGD
UniProt
PMID:19220460, PMID:24467396, PMID:21873635 GO_REF:0000024, MGI:MGI:3844778, RGD:13792537 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO
IEA
IBA
(PMID:10513816)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:10513816, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 ISO
IBA
(PMID:10513816)
PMID:21873635
RGD PMID:10513816, PMID:21873635 RGD:13792537 NCBI chr 1:21,613,148...21,684,483
Ensembl chr 1:21,613,148...21,684,480
JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 ISO (MGI:MGI:3043501|PMID:15130768) RGD PMID:15130768 MGI:MGI:3043501 NCBI chr 8:129,201,000...129,232,436
Ensembl chr 8:129,201,669...129,232,677
JBrowse link
G Itpa inosine triphosphatase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:123,209,611...123,221,266
Ensembl chr 3:123,209,608...123,221,269
JBrowse link
G Smpdl3a sphingomyelin phosphodiesterase, acid-like 3A ISO
ISS
(PMID:26783088)
GO_REF:0000024
RGD
UniProt
PMID:26783088 GO_REF:0000024 NCBI chr20:40,779,022...40,800,842
Ensembl chr20:40,778,927...40,800,868
JBrowse link
nucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
purine deoxyribonucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 ISO (MGI:MGI:2663996|PMID:12767940) RGD PMID:12767940 MGI:MGI:2663996 NCBI chr15:55,417,774...55,456,698
Ensembl chr15:55,419,502...55,456,698
JBrowse link
purine nucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c1a 5'-nucleotidase, cytosolic IA ISO (MGI:MGI:5295913|PMID:21873433) RGD PMID:21873433 MGI:MGI:5295913 NCBI chr 5:140,888,862...140,909,322
Ensembl chr 5:140,888,973...140,904,207
JBrowse link
purine nucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt1 nudix hydrolase 1 ISO
ISS
(PMID:10608900)
GO_REF:0000024
RGD
UniProt
PMID:10608900 GO_REF:0000024 NCBI chr12:16,391,578...16,398,771
Ensembl chr12:16,391,578...16,395,029
JBrowse link
G Nudt15 nudix hydrolase 15 ISO (PMID:26878724) RGD PMID:26878724 NCBI chr15:55,417,774...55,456,698
Ensembl chr15:55,419,502...55,456,698
JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ISO (MGI:MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:MGI:2178511 NCBI chr 1:259,692,020...259,818,922
Ensembl chr 1:259,739,955...259,819,494
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 ISO
IEA
(MGI:MGI:2178511|PMID:11929769)
GO_REF:0000107
RGD
Ensembl
PMID:11929769 GO_REF:0000107, MGI:MGI:2178511 NCBI chr 3:2,617,795...2,623,818
Ensembl chr 3:2,617,805...2,623,445
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase NAS
IEA
ISO
GO_REF:0000043
GO_REF:0000107
(MGI:MGI:3027665|PMID:14736855)
UniProt
Ensembl
RGD
PMID:14736855, PMID:8917457 GO_REF:0000043, GO_REF:0000107, MGI:MGI:3027665, RGD:631740 NCBI chr15:3,033,535...3,435,888
Ensembl chr15:3,033,495...3,435,888
JBrowse link
G Aprt adenine phosphoribosyl transferase ISO MGI:MGI:96217 (MGI:MGI:52624|PMID:8485579) RGD PMID:8485579 MGI:MGI:52624 NCBI chr19:55,387,288...55,389,256
Ensembl chr19:55,387,288...55,389,256
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
IBA
(PMID:9824441)
PMID:21873635
MGI:MGI:1857299|MGI:MGI:88061 (MGI:MGI:1331314|PMID:10037486), (MGI:MGI:2675193|PMID:12944494), (MGI:MGI:52624|PMID:8485579), (MGI:MGI:60112|PMID:8492116)
RGD PMID:8485579, PMID:8492116, PMID:9824441, PMID:10037486, PMID:12944494, PMID:21873635 MGI:MGI:1331314, MGI:MGI:2675193, MGI:MGI:52624, MGI:MGI:60112, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Mtap methylthioadenosine phosphorylase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:107,711,077...107,777,530
Ensembl chr 5:107,711,077...107,777,530
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07060778.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:93,405,802...93,406,182 JBrowse link
G Hint1 histidine triad nucleotide binding protein 1 ISO
IBA
ISS
(PMID:16835243)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16835243, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:40,208,236...40,211,981
Ensembl chr10:40,208,223...40,211,975
JBrowse link
G Hint1-ps1 histidine triad nucleotide binding protein 1, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:93,405,665...93,406,239 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IBA
(PMID:10681516)
PMID:21873635
RGD PMID:10681516, PMID:21873635 RGD:13792537 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,216,494...46,244,478
Ensembl chr10:46,216,884...46,243,077
JBrowse link
queuosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 TAS RGD PMID:6986171 RGD:724772 NCBI chr 8:22,447,057...22,454,328
Ensembl chr 8:22,446,661...22,454,439
JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 IEA
ISO
ISS
GO_REF:0000107
(PMID:18462755), (PMID:19699693), (PMID:21389046)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18462755, PMID:19699693, PMID:21389046 GO_REF:0000024, GO_REF:0000107 NCBI chr17:76,387,027...76,410,309
Ensembl chr17:76,387,031...76,410,294
JBrowse link
S-adenosylmethioninamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr20:45,384,000...45,399,694
Ensembl chr20:45,384,000...45,399,694
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) RGD PMID:9556635 NCBI chr15:51,222,954...51,250,787
Ensembl chr15:51,222,954...51,250,787
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO
ISS
(PMID:23671276)
GO_REF:0000024
RGD
UniProt
PMID:23671276 GO_REF:0000024 NCBI chr  X:157,073,860...157,095,652
Ensembl chr  X:157,072,736...157,095,274
JBrowse link
XDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      small molecule metabolic process 1870
        small molecule biosynthetic process 651
          nucleobase-containing small molecule biosynthetic process 82
            nucleoside biosynthetic process + 24
            nucleoside phosphate catabolic process + 63
Path 2
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      cellular metabolic process 11067
        cellular aromatic compound metabolic process 5709
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing compound biosynthetic process 3894
              nucleobase-containing small molecule biosynthetic process 82
                nucleoside biosynthetic process + 24
                nucleoside phosphate catabolic process + 63
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.