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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule biosynthetic process
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Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis



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nucleobase-containing small molecule biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITPA inosine triphosphatase involved_in IEA UniProt GO_REF:0000117 NCBI chr17:32,458,351...32,474,827
Ensembl chr17:32,455,459...32,474,786
JBrowse link
adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5E 5'-nucleotidase ecto involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3770326|PMID:16547283) Ensembl
RGD
Ensembl
MGI
PMID:16547283 PMID:30269308 GO_REF:0000107 MGI:3770326 RGD:152995394 NCBI chr 1:54,400,786...54,450,743
Ensembl chr 1:54,400,810...54,448,742
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:3640719|PMID:10720488)
(PMID:21873635)
(PMID:8894685)
(MGI:3531253|PMID:8663040)
(MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
MGI
GO_Central
Ensembl
GO_Central
PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000107 MGI:1095761 MGI:3531253 MGI:3640719 MGI:3808984 MGI:49990 MGI:72798 MGI:76875 MGI:83255 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,495...47,072,245
JBrowse link
G ADA2 adenosine deaminase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:69,526,413...69,554,640
Ensembl chr 5:69,526,434...69,554,661
JBrowse link
G ADAL adenosine deaminase like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:128,089,422...128,125,691
Ensembl chr 1:128,089,500...128,125,967
JBrowse link
G AK1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chr 1:268,355,032...268,365,659
Ensembl chr 1:268,355,032...268,365,598
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3027665|PMID:14736855) UniProt
UniProt
Ensembl
InterPro
MGI
Ensembl
PMID:14736855 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 MGI:3027665 NCBI chr14:76,836,072...77,320,586
Ensembl chr14:76,836,095...77,322,416
JBrowse link
G APRT adenine phosphoribosyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:52624|PMID:8485579) Ensembl
Ensembl
MGI
UniProt
PMID:8485579 GO_REF:0000043 GO_REF:0000107 MGI:52624 NCBI chr 6:890,272...893,278
Ensembl chr 6:890,831...893,277
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISS
ISO
(MGI:52624|PMID:8485579)
(MGI:1331314|PMID:10037486), (MGI:2675193|PMID:12944494), (MGI:52624|PMID:8485579), (MGI:60112|PMID:8492116)
Ensembl
InterPro
UniProt
Ensembl
MGI
UniProt
PMID:8485579 PMID:8492116 PMID:10037486 PMID:12944494 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 MGI:1331314 MGI:2675193 MGI:52624 MGI:60112 NCBI chr  X:110,321,144...110,357,902
Ensembl chr  X:110,321,208...110,357,899
JBrowse link
G MTAP methylthioadenosine phosphorylase involved_in IEA UniProt
UniProt
GO_REF:0000043 NCBI chr 1:200,882,954...200,934,389
Ensembl chr 1:200,882,955...200,934,639
JBrowse link
G PGM2 phosphoglucomutase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:29,307,628...29,343,012
Ensembl chr 8:29,307,685...29,381,571
JBrowse link
G PHF6 PHD finger protein 6 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:110,249,010...110,311,503
Ensembl chr  X:110,159,873...110,303,017
JBrowse link
G PNP purine nucleoside phosphorylase involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:78,426,838...78,447,029
Ensembl chr 7:78,424,740...78,446,997
JBrowse link
G PRTFDC1 phosphoribosyl transferase domain containing 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr10:50,365,654...50,458,487
Ensembl chr10:50,365,786...50,463,271
JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17278
    metabolic process 10891
      small molecule metabolic process 1700
        small molecule biosynthetic process 554
          nucleobase-containing small molecule biosynthetic process 15
            nucleoside biosynthetic process + 14
Path 2
Term Annotations click to browse term
  biological_process 17278
    metabolic process 10891
      cellular metabolic process 9229
        cellular aromatic compound metabolic process 5435
          nucleobase-containing compound metabolic process 5224
            nucleobase-containing compound biosynthetic process 3648
              nucleobase-containing small molecule biosynthetic process 15
                nucleoside biosynthetic process + 14
paths to the root