Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleobase-containing small molecule biosynthetic process
go back to main search page
Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis


show annotations for term's descendants           Sort by:
 
nucleobase-containing small molecule biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITPA inosine triphosphatase involved_in IEA UniProt GO_REF:0000117 NCBI chr17:32,458,351...32,474,827
Ensembl chr17:32,455,459...32,474,786 		JBrowse link
adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5E 5'-nucleotidase ecto involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3770326|PMID:16547283) Ensembl
RGD
Ensembl
MGI		 PMID:16547283 PMID:30269308 GO_REF:0000107 MGI:3770326 RGD:152995394 NCBI chr 1:54,400,786...54,450,743
Ensembl chr 1:54,400,810...54,448,742 		JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (MGI:3640719|PMID:10720488)
(PMID:21873635)
(PMID:8894685)
(MGI:3531253|PMID:8663040)
(MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)		 MGI
GO_Central
Ensembl
GO_Central		 PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000107 MGI:1095761 MGI:3531253 MGI:3640719 MGI:3808984 MGI:49990 MGI:72798 MGI:76875 MGI:83255 NCBI chr17:47,044,492...47,072,232
Ensembl chr17:47,044,495...47,072,245 		JBrowse link
G ADA2 adenosine deaminase 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 5:69,526,413...69,554,640
Ensembl chr 5:69,526,434...69,554,661 		JBrowse link
G ADAL adenosine deaminase like involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:128,089,422...128,125,691
Ensembl chr 1:128,089,500...128,125,967 		JBrowse link
G AK1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chr 1:268,355,032...268,365,659
Ensembl chr 1:268,355,032...268,365,598 		JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3027665|PMID:14736855) UniProt
UniProt
Ensembl
InterPro
MGI
Ensembl		 PMID:14736855 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 MGI:3027665 NCBI chr14:76,836,072...77,320,586
Ensembl chr14:76,836,095...77,322,416 		JBrowse link
G APRT adenine phosphoribosyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:52624|PMID:8485579) Ensembl
Ensembl
MGI
UniProt		 PMID:8485579 GO_REF:0000043 GO_REF:0000107 MGI:52624 NCBI chr 6:890,272...893,278
Ensembl chr 6:890,831...893,277 		JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISS
ISO		 (MGI:52624|PMID:8485579)
(MGI:1331314|PMID:10037486), (MGI:2675193|PMID:12944494), (MGI:52624|PMID:8485579), (MGI:60112|PMID:8492116)		 Ensembl
InterPro
UniProt
Ensembl
MGI
UniProt		 PMID:8485579 PMID:8492116 PMID:10037486 PMID:12944494 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 MGI:1331314 MGI:2675193 MGI:52624 MGI:60112 NCBI chr  X:110,321,144...110,357,902
Ensembl chr  X:110,321,208...110,357,899 		JBrowse link
G MTAP methylthioadenosine phosphorylase involved_in IEA UniProt
UniProt		 GO_REF:0000043 NCBI chr 1:200,882,954...200,934,389
Ensembl chr 1:200,882,955...200,934,639 		JBrowse link
G PGM2 phosphoglucomutase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:29,307,628...29,343,012
Ensembl chr 8:29,307,685...29,381,571 		JBrowse link
G PHF6 PHD finger protein 6 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr  X:110,249,010...110,311,503
Ensembl chr  X:110,159,873...110,303,017 		JBrowse link
G PNP purine nucleoside phosphorylase involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:78,426,838...78,447,029
Ensembl chr 7:78,424,740...78,446,997 		JBrowse link
G PRTFDC1 phosphoribosyl transferase domain containing 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr10:50,365,654...50,458,487
Ensembl chr10:50,365,786...50,463,271 		JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,248,071...140,255,803
Ensembl chr15:140,248,068...140,255,892 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17278
    metabolic process 10891
      small molecule metabolic process 1700
        small molecule biosynthetic process 554
          nucleobase-containing small molecule biosynthetic process 15
            nucleoside biosynthetic process + 14
Path 2
Term Annotations click to browse term
  biological_process 17278
    metabolic process 10891
      cellular metabolic process 9229
        cellular aromatic compound metabolic process 5435
          nucleobase-containing compound metabolic process 5224
            nucleobase-containing compound biosynthetic process 3648
              nucleobase-containing small molecule biosynthetic process 15
                nucleoside biosynthetic process + 14
paths to the root