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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule biosynthetic process
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Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis


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adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5'-nucleotidase ecto acts_upstream_of_or_within ISO (MGI:3770326|PMID:16547283) MGI
RGD
PMID:16547283 PMID:30269308 MGI:3770326 RGD:152995394 NCBI chrNW_004955411:12,891,236...12,946,324
Ensembl chrNW_004955411:12,891,236...12,948,406
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within
involved_in
ISO (MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
(PMID:8894685)
(MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
(MGI:3640719|PMID:10720488)
(MGI:4835158|PMID:8672487)
(MGI:3531253|PMID:8663040)
MGI
UniProt
PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... MGI:1095761 MGI:3531253 MGI:3640719 MGI:3808984 MGI:4835158 MGI:49990 MGI:72798 MGI:76875 MGI:83255 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Ak1 adenylate kinase 1 ISO RGD PMID:19049516 RGD:5134369 NCBI chrNW_004955419:799,415...807,138
Ensembl chrNW_004955419:799,410...811,029
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within ISO (MGI:3027665|PMID:14736855) MGI PMID:14736855 MGI:3027665 NCBI chrNW_004955437:17,279,541...17,786,140
Ensembl chrNW_004955437:17,279,240...17,786,079
JBrowse link
G Aprt adenine phosphoribosyltransferase acts_upstream_of_or_within ISO (MGI:52624|PMID:8485579) MGI PMID:8485579 MGI:52624 NCBI chrNW_004955541:2,687,938...2,690,906
Ensembl chrNW_004955541:2,687,938...2,690,906
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:9824441)
(MGI:52624|PMID:8485579)
(MGI:1331314|PMID:10037486), (MGI:2675193|PMID:12944494), (MGI:52624|PMID:8485579), (MGI:60112|PMID:8492116)
UniProt
MGI
PMID:8485579 PMID:8492116 PMID:9824441 PMID:10037486 PMID:12944494 MGI:1331314 MGI:2675193 MGI:52624 MGI:60112 NCBI chrNW_004955473:462,940...510,006 JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase involved_in ISO (PMID:12614151) UniProt PMID:12614151 NCBI chrNW_004955542:155,741...163,759
Ensembl chrNW_004955542:155,742...163,759
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12199
    metabolic process 7783
      small molecule metabolic process 1274
        small molecule biosynthetic process 418
          nucleobase-containing small molecule biosynthetic process 7
            nucleoside biosynthetic process + 7
Path 2
Term Annotations click to browse term
  biological_process 12199
    metabolic process 7783
      cellular metabolic process 6670
        cellular aromatic compound metabolic process 4004
          nucleobase-containing compound metabolic process 3821
            nucleobase-containing compound biosynthetic process 2674
              nucleobase-containing small molecule biosynthetic process 7
                nucleoside biosynthetic process + 7
paths to the root