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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase-containing small molecule biosynthetic process
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Accession:GO:0034404 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms:exact_synonym: nucleobase, nucleoside and nucleotide anabolism;   nucleobase, nucleoside and nucleotide biosynthesis;   nucleobase, nucleoside and nucleotide formation;   nucleobase, nucleoside and nucleotide synthesis



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adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto involved_in
acts_upstream_of_or_within
IEA
IMP
ISO
GO_REF:0000107
MGI:3522017 (MGI:3770326|PMID:16547283)
Ensembl
RGD
PMID:16547283 PMID:30269308 GO_REF:0000107 MGI:3770326, RGD:152995394 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
IBA
GO_REF:0000024
(MGI:4835158|PMID:8672487)
MGI:1857117|MGI:2681791|MGI:2683027 (MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3640719|PMID:10720488), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:72798|PMID:7731963), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
(PMID:8894685)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
UniProt
RGD
Ensembl
TreeGrafter
GO_Central
PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1095761 MGI:3531253 MGI:3640719 MGI:3808984 MGI:4835158 MGI:49990 MGI:72798 MGI:76875 MGI:83255 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Adal adenosine deaminase-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:108,101,857...108,119,557
Ensembl chr 3:108,101,857...108,118,516
Ensembl chr 3:108,101,857...108,118,516
JBrowse link
G Ak1 adenylate kinase 1 IDA RGD PMID:19049516 RGD:5134369 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041
JBrowse link
nucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:33833118)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:33833118 GO_REF:0000024 GO_REF:0000107 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:33833118)
UniProt
RGD
PMID:33833118 GO_REF:0000024 NCBI chr 9:14,481,296...14,484,034
Ensembl chr 9:14,481,066...14,484,022
JBrowse link
G Qng1 Q-nucleotide N-glycosylase 1 involved_in ISO (PMID:36610787) RGD PMID:36610787 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975
JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within
involved_in
NAS
ISO
IEA
(MGI:3027665|PMID:14736855)
GO_REF:0000043
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14736855 PMID:8917457 GO_REF:0000043 GO_REF:0000107 MGI:3027665, RGD:631740 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510
JBrowse link
G Aprt adenine phosphoribosyl transferase acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:96217 (MGI:52624|PMID:8485579)
GO_REF:0000107
RGD
Ensembl
PMID:8485579 GO_REF:0000107 MGI:52624 NCBI chr19:50,626,201...50,628,491
Ensembl chr19:50,626,202...50,628,431
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:9824441)
GO_REF:0000107
GO_REF:0000043
MGI:1857299|MGI:88061 (MGI:1331314|PMID:10037486), (MGI:2675193|PMID:12944494), (MGI:52624|PMID:8485579), (MGI:60112|PMID:8492116)
RGD
Ensembl
UniProt
PMID:8485579 PMID:8492116 PMID:9824441 PMID:10037486 PMID:12944494 GO_REF:0000043 GO_REF:0000107 MGI:1331314 MGI:2675193 MGI:52624 MGI:60112 NCBI chr  X:132,736,175...132,768,149
Ensembl chr  X:132,736,096...132,768,154
JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:103,874,460...103,920,684
Ensembl chr 5:103,873,020...103,939,406
JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,170,607...24,178,269
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:83,549,608...83,654,517
Ensembl chr17:83,548,803...83,655,179
JBrowse link
queuosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 TAS RGD PMID:6986171 RGD:724772 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837
JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase involved_in ISO (PMID:12614151) RGD PMID:12614151 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO (PMID:14697231) RGD PMID:14697231 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20350
    metabolic process 11904
      small molecule metabolic process 1939
        small molecule biosynthetic process 637
          nucleobase-containing small molecule biosynthetic process 17
            nucleoside biosynthetic process + 17
Path 2
Term Annotations click to browse term
  biological_process 20350
    metabolic process 11904
      cellular metabolic process 10470
        cellular aromatic compound metabolic process 5965
          nucleobase-containing compound metabolic process 5722
            nucleobase-containing compound biosynthetic process 3776
              nucleobase-containing small molecule biosynthetic process 17
                nucleoside biosynthetic process + 17
paths to the root