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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear periphery
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Accession:GO:0034399 term browser browse the term
Definition:The portion of the nuclear lumen proximal to the inner nuclear membrane.


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nuclear periphery term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc4 anaphase promoting complex subunit 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:60,471,962...60,503,803
Ensembl chr14:60,471,962...60,503,803
JBrowse link
G Atf4 activating transcription factor 4 located_in ISO (PMID:23392669) RGD PMID:23392669 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Atf7 activating transcription factor 7 located_in ISO (PMID:17264123) RGD PMID:17264123 NCBI chr 7:144,131,382...144,223,463
Ensembl chr 7:144,136,325...144,223,429
JBrowse link
G Dag1 dystroglycan 1 IDA RGD PMID:21668890 RGD:12902619 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Ebna1bp2 EBNA1 binding protein 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:137,458,692...137,463,255
Ensembl chr 5:137,670,123...137,674,802
Ensembl chr 5:137,670,123...137,674,802
JBrowse link
G Map2 microtubule-associated protein 2 located_in ISO (MGI:2158988|PMID:11834298) RGD PMID:11834298 MGI:2158988 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Mapt microtubule-associated protein tau located_in IEA
ISO
GO_REF:0000107
(PMID:19157893)
Ensembl
RGD
PMID:19157893 GO_REF:0000107 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Nup107 nucleoporin 107 located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15229283)
Ensembl
UniProt
RGD
PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:60,781,724...60,825,225
Ensembl chr 7:60,781,729...60,825,242
JBrowse link
G Nup153 nucleoporin 153 located_in ISS
IEA
IDA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:11839768
(PMID:11839768), (PMID:15229283)
UniProt
Ensembl
RGD
PMID:11839768 PMID:15229283, PMID:11839768 GO_REF:0000024 GO_REF:0000107, RGD:8553300 NCBI chr17:18,358,712...18,411,368
Ensembl chr17:18,358,712...18,411,368
JBrowse link
G Nup205 nucleoporin 205 located_in ISO (PMID:15229283) RGD PMID:15229283 NCBI chr 4:62,703,779...62,773,931
Ensembl chr 4:62,703,779...62,773,923
JBrowse link
G Nup93 nucleoporin 93 located_in ISS
ISO
GO_REF:0000024
(PMID:15229283)
UniProt
RGD
PMID:15229283 GO_REF:0000024 NCBI chr19:11,159,769...11,263,980
Ensembl chr19:11,159,774...11,263,980
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor located_in ISS
IDA
ISO
GO_REF:0000024
PMID:11839768
(PMID:11839768), (PMID:15229283)
UniProt
RGD
PMID:11839768 PMID:15229283, PMID:11839768 GO_REF:0000024, RGD:8553300 NCBI chr 1:167,213,866...167,308,851
Ensembl chr 1:167,213,866...167,308,851
JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 located_in ISS
ISO
GO_REF:0000024
(PMID:11512661)
UniProt
RGD
PMID:11512661 GO_REF:0000024 NCBI chr 5:101,555,691...101,588,659
Ensembl chr 5:101,555,694...101,588,598
JBrowse link
G Sp100 SP100 nuclear antigen located_in ISO (PMID:11313457) RGD PMID:11313457 NCBI chr 9:92,675,103...92,718,489
Ensembl chr 9:92,681,078...92,717,929
JBrowse link
G Telo2 telomere maintenance 2 located_in ISO (PMID:20864032) RGD PMID:20864032 NCBI chr10:14,461,581...14,476,812
Ensembl chr10:14,461,839...14,476,785
JBrowse link
G Tpr translocated promoter region, nuclear basket protein located_in ISO
IDA
(PMID:11514627), (PMID:11839768), (PMID:11952838), (PMID:15229283), (PMID:22401879), (PMID:9024684)
(MGI:5487504|PMID:22401879)
RGD PMID:9024684 PMID:11514627 PMID:11839768 PMID:11952838 PMID:15229283 PMID:22401879, PMID:11839768 MGI:5487504, RGD:8553300 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
lamin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 located_in IEA
ISO
GO_REF:0000107
(MGI:1099910|PMID:9374518)
Ensembl
RGD
PMID:9374518 GO_REF:0000107 MGI:1099910 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Lmna lamin A/C located_in IEA
ISO
GO_REF:0000107
(MGI:67980|PMID:8032679)
Ensembl
RGD
PMID:8032679 GO_REF:0000107 MGI:67980 NCBI chr 2:187,842,884...187,863,552
Ensembl chr 2:187,842,885...187,863,516
JBrowse link
G Lmnb1 lamin B1 located_in IEA
ISO
GO_REF:0000107
(MGI:67980|PMID:8032679)
Ensembl
RGD
PMID:8032679 GO_REF:0000107 MGI:67980 NCBI chr18:51,785,111...51,822,264
Ensembl chr18:51,785,111...51,822,264
JBrowse link
G Lmnb2 lamin B2 located_in ISO (MGI:67980|PMID:8032679) RGD PMID:8032679 MGI:67980 NCBI chr 7:11,657,870...11,676,936
Ensembl chr 7:11,660,934...11,675,472
JBrowse link
G Narf nuclear prelamin A recognition factor located_in
is_active_in
ISO
IBA
(PMID:10514485)
PMID:21873635
RGD PMID:10514485, PMID:21873635 RGD:13792537 NCBI chr10:110,445,765...110,463,735
Ensembl chr10:110,445,797...110,463,727
JBrowse link
nuclear lamina term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cask calcium/calmodulin dependent serine protein kinase located_in
part_of
ISO (PMID:18664494) RGD PMID:18664494 NCBI chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
JBrowse link
G Hlcs holocarboxylase synthetase located_in ISO (PMID:14613969) RGD PMID:14613969 NCBI chr11:34,357,372...34,537,798
Ensembl chr11:34,352,287...34,526,931
JBrowse link
G Lmnb1 lamin B1 IDA RGD PMID:16950509 RGD:10044252 NCBI chr18:51,785,111...51,822,264
Ensembl chr18:51,785,111...51,822,264
JBrowse link
G Nup35 nucleoporin 35 IDA RGD PMID:15703211 RGD:7327145 NCBI chr 3:67,866,784...67,896,828
Ensembl chr 3:67,870,111...67,896,153
JBrowse link
G Pcna proliferating cell nuclear antigen located_in ISO (MGI:2448855|PMID:10888872) RGD PMID:10888872 MGI:2448855 NCBI chr 3:124,880,698...124,884,570
Ensembl chr 3:124,880,698...124,884,570
JBrowse link
G Stx1b syntaxin 1B located_in ISO (PMID:18691641) RGD PMID:18691641 NCBI chr 1:199,251,842...199,270,465
Ensembl chr 1:199,251,844...199,270,627
JBrowse link
nuclear matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahctf1 AT hook containing transcription factor 1 located_in ISO (MGI:2389595|PMID:11952839) RGD PMID:11952839 MGI:2389595 NCBI chr13:98,023,528...98,079,138
Ensembl chr13:98,023,430...98,078,946
JBrowse link
G Akap8 A-kinase anchoring protein 8 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(MGI:3694338|PMID:16751186)
RGD PMID:16751186, PMID:8125992, PMID:21873635 MGI:3694338, RGD:724798, RGD:13792537 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918
JBrowse link
G Akap8l A-kinase anchoring protein 8 like located_in
is_active_in
ISO
IBA
(PMID:11034899), (PMID:16391387)
PMID:21873635
(MGI:4461129|PMID:16391387)
RGD PMID:11034899 PMID:16391387, PMID:21873635 MGI:4461129, RGD:13792537 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Alox5 arachidonate 5-lipoxygenase located_in IEA
ISO
GO_REF:0000107
(PMID:19233132)
Ensembl
RGD
PMID:19233132 GO_REF:0000107 NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
JBrowse link
G Anp32a acidic nuclear phosphoprotein 32 family member A located_in ISO UniProtKB:P54253 (MGI:1099356|PMID:9353121) RGD PMID:9353121 MGI:1099356 NCBI chr 8:67,295,578...67,333,075
Ensembl chr 8:67,295,727...67,333,247
JBrowse link
G Arfgef1 ADP ribosylation factor guanine nucleotide exchange factor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:8,666,046...8,760,458
Ensembl chr 5:8,666,200...8,760,458
JBrowse link
G Atn1 atrophin 1 located_in ISO (PMID:10973986) RGD PMID:10973986 NCBI chr 4:157,267,394...157,281,199
Ensembl chr 4:157,267,901...157,274,755
Ensembl chr 9:157,267,901...157,274,755
JBrowse link
G Atxn1 ataxin 1 located_in ISS
ISO
GO_REF:0000024
(PMID:17557114), (PMID:9353120)
UniProt
RGD
PMID:9353120 PMID:17557114 GO_REF:0000024 NCBI chr17:19,160,986...19,533,814
Ensembl chr17:19,249,952...19,533,814
JBrowse link
G Basp1 brain abundant, membrane attached signal protein 1 located_in ISO
IEA
(PMID:19050011)
GO_REF:0000107
RGD
Ensembl
PMID:19050011 GO_REF:0000107 NCBI chr 2:77,586,424...77,632,626
Ensembl chr 2:77,586,424...77,632,628
JBrowse link
G Blm BLM RecQ like helicase located_in ISO (PMID:11309417) RGD PMID:11309417 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase located_in ISO (PMID:9525610) RGD PMID:9525610 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284
JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase located_in ISO (PMID:18664494) RGD PMID:18664494 NCBI chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IDA RGD PMID:16172914 RGD:1625368 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta located_in IDA
ISO
(MGI:4947203|PMID:21122806) RGD PMID:21122806, PMID:14661739, PMID:12095231 MGI:4947203, RGD:2303385, RGD:2303386 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Cenpf centromere protein F located_in ISO (PMID:7542657) RGD PMID:7542657 NCBI chr13:108,132,499...108,178,609
Ensembl chr13:108,132,499...108,178,609
JBrowse link
G Cenpw centromere protein W located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:29,915,443...29,920,598
Ensembl chr 1:29,915,443...29,920,598
JBrowse link
G Cfl1 cofilin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Clic4 chloride intracellular channel 4 located_in IEA
ISO
GO_REF:0000107
(PMID:14569596)
Ensembl
RGD
PMID:14569596 GO_REF:0000107 NCBI chr 5:153,568,937...153,625,669
Ensembl chr 5:153,568,745...153,625,869
JBrowse link
G Csnk2b casein kinase 2 beta IDA RGD PMID:9548568 RGD:11565140 NCBI chr20:5,108,692...5,113,675
Ensembl chr20:5,106,890...5,113,112
JBrowse link
G Cxxc1 CXXC finger protein 1 located_in ISO (MGI:2389534|PMID:12200428) RGD PMID:12200428 MGI:2389534 NCBI chr18:70,192,520...70,197,871
Ensembl chr18:70,192,493...70,197,867
JBrowse link
G Da2-19 uncharacterized LOC302729 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:48,196,789...48,213,506
Ensembl chr  X:48,196,916...48,213,505
JBrowse link
G Dcaf7 DDB1 and CUL4 associated factor 7 located_in ISO (PMID:21328542) RGD PMID:21328542 NCBI chr10:94,231,585...94,254,046
Ensembl chr10:94,231,585...94,254,046
JBrowse link
G Ddx39b DExD-box helicase 39B IDA RGD PMID:1618789 RGD:632224 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G Dgkq diacylglycerol kinase, theta located_in IMP PMID:15337525 ParkinsonsUK-UCL PMID:15337525 RGD:11567257 NCBI chr14:2,069,409...2,083,370
Ensembl chr14:2,069,409...2,083,370
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha located_in ISS
ISO
PMID:12138111
(PMID:12138111)
RGD PMID:12138111, PMID:12138111 RGD:8554662 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dntt DNA nucleotidylexotransferase IDA RGD PMID:3272344 RGD:8694147 NCBI chr 1:260,289,626...260,321,174
Ensembl chr 1:260,289,589...260,321,320
JBrowse link
G Enc1 ectodermal-neural cortex 1 IDA RGD PMID:9566959 RGD:7775032 NCBI chr 2:28,049,217...28,061,023
Ensembl chr 2:28,049,217...28,061,029
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit located_in ISO (PMID:11782547), (PMID:26620705) RGD PMID:11782547 PMID:26620705 NCBI chr 2:39,434,617...39,473,392
Ensembl chr 2:39,434,634...39,472,017
JBrowse link
G Fign fidgetin, microtubule severing factor located_in ISO (MGI:3694338|PMID:16751186) RGD PMID:16751186 MGI:3694338 NCBI chr 3:49,992,250...50,120,601
Ensembl chr 3:49,992,397...50,120,392
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor located_in ISO (PMID:12874834) RGD PMID:12874834 NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371
JBrowse link
G Gfi1b growth factor independent 1B transcriptional repressor located_in ISO (PMID:12874834) RGD PMID:12874834 NCBI chr 3:7,190,721...7,203,444
Ensembl chr 3:7,190,722...7,203,420
JBrowse link
G Ghrhr growth hormone releasing hormone receptor located_in ISO (PMID:10461027) RGD PMID:10461027 NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
JBrowse link
G Gmcl1 germ cell-less 1, spermatogenesis associated located_in ISO (MGI:2159164|PMID:11591818) RGD PMID:11591818 MGI:2159164 NCBI chr 4:118,494,997...118,534,301
Ensembl chr 4:118,478,075...118,534,280
JBrowse link
G Hat1 histone acetyltransferase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IDA RGD PMID:11035023 RGD:9685356 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hlcs holocarboxylase synthetase located_in ISO (PMID:14613969) RGD PMID:14613969 NCBI chr11:34,357,372...34,537,798
Ensembl chr11:34,352,287...34,526,931
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 located_in IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M located_in ISO
IEA
(PMID:19874820)
GO_REF:0000107
RGD
Ensembl
PMID:19874820 GO_REF:0000107 NCBI chr 7:18,516,253...18,554,536
Ensembl chr 7:18,516,512...18,554,227
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in
is_active_in
ISO
IBA
IEA
(PMID:14608463), (PMID:8174554)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:8174554 PMID:14608463, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Iffo1 intermediate filament family orphan 1 located_in ISO (PMID:31548606) RGD PMID:31548606 NCBI chr 4:157,659,115...157,676,335
Ensembl chr 4:157,659,147...157,676,331
JBrowse link
G Kat8 lysine acetyltransferase 8 located_in ISO (MGI:5139938|PMID:21746928) RGD PMID:21746928 MGI:5139938 NCBI chr 1:199,360,645...199,372,925
Ensembl chr 1:199,360,645...199,372,923
JBrowse link
G Kin Kin17 DNA and RNA binding protein located_in ISO (PMID:12754299) RGD PMID:12754299 NCBI chr17:72,198,882...72,216,780
Ensembl chr17:72,198,866...72,209,279
JBrowse link
G Krt18 keratin 18 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:143,629,455...143,633,131
Ensembl chr 7:143,629,455...143,633,131
JBrowse link
G Krt8 keratin 8 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:143,596,511...143,603,745
Ensembl chr 7:143,596,511...143,603,803
JBrowse link
G Lmna lamin A/C located_in IDA
IEA
ISO
GO_REF:0000107
(PMID:31548606)
Ensembl
RGD
PMID:31548606, PMID:12243746 GO_REF:0000107, RGD:1598684 NCBI chr 2:187,842,884...187,863,552
Ensembl chr 2:187,842,885...187,863,516
JBrowse link
G Lmnb1 lamin B1 located_in IDA
ISO
IEA
(MGI:4440688|PMID:20153721)
GO_REF:0000107
RGD
Ensembl
PMID:20153721, PMID:12243746 GO_REF:0000107 MGI:4440688, RGD:1598684 NCBI chr18:51,785,111...51,822,264
Ensembl chr18:51,785,111...51,822,264
JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:209,358,668...209,448,123
Ensembl chr 2:209,358,760...209,448,123
JBrowse link
G Maea macrophage erythroblast attacher, E3 ubiquitin ligase located_in ISO (PMID:16510120) RGD PMID:16510120 NCBI chr14:82,664,248...82,697,673
Ensembl chr14:82,664,249...82,697,673
JBrowse link
G Mat1a methionine adenosyltransferase 1A IDA RGD PMID:19497982 RGD:7242770 NCBI chr16:18,690,649...18,709,135
Ensembl chr16:18,690,246...18,709,133
JBrowse link
G Matr3 matrin 3 IDA RGD PMID:2033075 RGD:69882 NCBI chr18:28,351,691...28,390,764
Ensembl chr18:28,361,283...28,390,717
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 located_in ISO (MGI:5447620|PMID:15777793) RGD PMID:15777793 MGI:5447620 NCBI chr18:70,248,568...70,263,190
Ensembl chr18:70,248,713...70,263,164
JBrowse link
G Men1 menin 1 located_in ISO (PMID:12874027) RGD PMID:12874027 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 located_in ISO (PMID:23260667) RGD PMID:23260667 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 located_in ISO (PMID:21328542) RGD PMID:21328542 NCBI chr12:36,871,917...37,033,701
Ensembl chr12:36,871,999...37,033,701
JBrowse link
G Nono non-POU domain containing, octamer-binding located_in ISO (PMID:19874820) RGD PMID:19874820 NCBI chr  X:71,324,365...71,342,225
Ensembl chr  X:71,324,365...71,342,225
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:20387789 RGD:11534991 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor located_in IDA PMID:18303947 UniProt PMID:18303947 RGD:8553324 NCBI chr 3:2,262,173...2,270,996
Ensembl chr 3:2,262,253...2,270,995
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in ISO (PMID:12941608) RGD PMID:12941608 NCBI chr15:58,171,163...58,201,888
Ensembl chr15:58,170,967...58,201,970
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 located_in IDA
ISO
(MGI:3619161|PMID:11092755)
(PMID:11956313), (PMID:7962183)
RGD PMID:7962183 PMID:11092755 PMID:11956313, PMID:12243746 MGI:3619161, RGD:1598684 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase located_in ISO
ISS
(PMID:17148573)
GO_REF:0000024
RGD
UniProt
PMID:17148573 GO_REF:0000024 NCBI chr 4:145,282,828...145,289,367
Ensembl chr 4:145,282,797...145,289,326
JBrowse link
G Phactr3 phosphatase and actin regulator 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:173,798,542...173,871,386
Ensembl chr 3:173,798,545...173,871,904
JBrowse link
G Phb2 prohibitin 2 located_in ISO
ISS
(PMID:21328542)
GO_REF:0000024
RGD
UniProt
PMID:21328542 GO_REF:0000024 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367
JBrowse link
G Phf5a PHD finger protein 5A located_in ISO (MGI:2179895|PMID:12054543) RGD PMID:12054543 MGI:2179895 NCBI chr 7:123,095,286...123,101,851
Ensembl chr 7:123,095,288...123,101,869
JBrowse link
G Pias4 protein inhibitor of activated STAT, 4 located_in ISO (MGI:2154657|PMID:11731474) RGD PMID:11731474 MGI:2154657 NCBI chr 7:11,414,565...11,428,090
Ensembl chr 7:11,414,446...11,428,552
JBrowse link
G Pml PML nuclear body scaffold located_in ISO (PMID:11080164)
(MGI:3051070|PMID:15252119)
RGD PMID:11080164 PMID:15252119 MGI:3051070 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit located_in ISS
ISO
GO_REF:0000024
(PMID:1903085)
UniProt
RGD
PMID:1903085 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Ppig peptidylprolyl isomerase G IDA RGD PMID:9525923 RGD:633708 NCBI chr 3:55,959,756...55,990,040
Ensembl chr 3:55,960,067...55,988,968
JBrowse link
G Prkcd protein kinase C, delta located_in IEA
ISO
GO_REF:0000107
(MGI:1861342|PMID:10882525)
Ensembl
RGD
PMID:10882525 GO_REF:0000107 MGI:1861342 NCBI chr16:6,655,131...6,675,746
Ensembl chr16:6,655,120...6,675,746
JBrowse link
G Prkcz protein kinase C, zeta located_in ISO (MGI:1861342|PMID:10882525) RGD PMID:10882525 MGI:1861342 NCBI chr 5:172,658,071...172,769,492
Ensembl chr 5:172,658,748...172,769,421
JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A located_in ISO (PMID:16391387)
(MGI:4461129|PMID:16391387)
RGD PMID:16391387 MGI:4461129 NCBI chr 3:38,680,583...38,741,570
Ensembl chr 3:38,682,146...38,741,113
JBrowse link
G Psma6 proteasome 20S subunit alpha 6 located_in ISS
ISO
GO_REF:0000024
(MGI:4942263|PMID:10852819)
BHF-UCL
RGD
PMID:10852819 GO_REF:0000024 MGI:4942263 NCBI chr 6:76,174,460...76,205,429
Ensembl chr 6:76,174,452...76,205,426
JBrowse link
G Pspc1 paraspeckle component 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:36,946,914...37,030,273
Ensembl chr15:36,950,257...37,030,281
JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (PMID:11590136) RGD PMID:11590136 NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673
JBrowse link
G Rnasel ribonuclease L IDA RGD PMID:8469023 RGD:2291995 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Runx1t1 RUNX1 partner transcriptional co-repressor 1 located_in ISO (PMID:10973986) RGD PMID:10973986 NCBI chr 5:27,284,921...27,440,802
Ensembl chr 5:27,312,928...27,442,841
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IDA RGD PMID:10050036 RGD:68302 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Satb1 SATB homeobox 1 located_in ISO (MGI:3589727|PMID:15851481) RGD PMID:15851481 MGI:3589727 NCBI chr 9:2,181,135...2,277,949
Ensembl chr 9:2,190,915...2,274,629
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 located_in IDA PMID:9528809 UniProt PMID:9528809 RGD:8554489 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 located_in ISO (MGI:4440688|PMID:20153721) RGD PMID:20153721 MGI:4440688 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sfpq splicing factor proline and glutamine rich located_in ISO (PMID:19874820) RGD PMID:19874820 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Smc1a structural maintenance of chromosomes 1A located_in ISO
IEA
(PMID:11590136)
GO_REF:0000107
RGD
Ensembl
PMID:11590136 GO_REF:0000107 NCBI chr  X:21,710,976...21,755,708
Ensembl chr  X:21,711,019...21,755,525
JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO
ISS
GO_REF:0000107
(PMID:11590136)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11590136 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:274,310,120...274,352,856
Ensembl chr 1:274,309,758...274,352,854
JBrowse link
G Snw1 SNW domain containing 1 located_in ISO (PMID:12840015) RGD PMID:12840015 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 located_in ISO (MGI:5447620|PMID:15777793) RGD PMID:15777793 MGI:5447620 NCBI chr 1:259,373,921...259,502,108
Ensembl chr 1:259,376,933...259,484,569
JBrowse link
G Sparc secreted protein acidic and cysteine rich located_in ISO (PMID:15389586) RGD PMID:15389586 NCBI chr10:40,742,390...40,764,232
Ensembl chr10:40,742,400...40,764,185
JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 located_in TAS PMID:9704016 UniProt PMID:9704016 RGD:70020 NCBI chr 1:219,964,429...220,006,811
Ensembl chr 1:219,964,429...220,005,068
JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 located_in ISO (PMID:11294830) RGD PMID:11294830 NCBI chr 1:84,168,494...84,254,679
Ensembl chr 1:84,168,495...84,254,645
JBrowse link
G Stag1 stromal antigen 1 located_in ISO (PMID:11590136) RGD PMID:11590136 NCBI chr 8:108,958,099...109,342,738
Ensembl chr 8:108,958,046...109,342,738
JBrowse link
G Stag2 stromal antigen 2 located_in ISO (PMID:11590136) RGD PMID:11590136 NCBI chr  X:128,493,603...128,624,418
Ensembl chr  X:128,493,614...128,624,418
JBrowse link
G Tep1 telomerase associated protein 1 located_in ISO (PMID:7876352) RGD PMID:7876352 NCBI chr15:27,751,186...27,798,839
Ensembl chr15:27,751,180...27,798,839
JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:199,664,039...199,670,970
Ensembl chr 1:199,664,173...199,670,961
JBrowse link
G Tp53 tumor protein p53 located_in ISO (PMID:11080164) RGD PMID:11080164 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3038029|PMID:14993289)
Ensembl
RGD
PMID:14993289 GO_REF:0000107 MGI:3038029 NCBI chr 9:10,738,211...10,758,403
Ensembl chr 9:10,738,222...10,757,954
JBrowse link
G Vdr vitamin D receptor IDA RGD PMID:9744521 RGD:8158090 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
G Vim vimentin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
G Xpot exportin for tRNA is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:63,688,646...63,728,988
Ensembl chr 7:63,690,053...63,728,988
JBrowse link
G Yy1 YY1 transcription factor IDA RGD PMID:9215534 RGD:9588269 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
G Zfp326 zinc finger protein 326 located_in ISO (MGI:1309638|PMID:9809746) RGD PMID:9809746 MGI:1309638 NCBI chr14:4,998,530...5,006,759
NCBI chr14:5,016,764...5,036,663
Ensembl chr14:4,998,539...5,033,942
JBrowse link
G Zfp703 zinc finger protein 703 located_in ISO (PMID:21328542) RGD PMID:21328542 NCBI chr16:69,237,857...69,242,028
Ensembl chr16:69,237,857...69,242,028
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20130
    cellular anatomical entity 19831
      nuclear periphery 122
        nuclear lamina + 10
        nuclear matrix 100
Path 2
Term Annotations click to browse term
  cellular_component 20130
    cellular anatomical entity 19831
      organelle 13135
        membrane-bounded organelle 11686
          intracellular membrane-bounded organelle 11224
            nucleus 7061
              nuclear lumen 3939
                nuclear periphery 122
                  nuclear lamina + 10
                  nuclear matrix 100
paths to the root