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ONTOLOGY REPORT - ANNOTATIONS

Term:high-density lipoprotein particle clearance
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Accession:GO:0034384 term browser browse the term
Definition:The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
Synonyms:exact_synonym: HDL clearance


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high-density lipoprotein particle clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA2 apolipoprotein A2 involved_in ISO (PMID:10764676) BHF-UCL PMID:10764676 NCBI chr38:21,263,641...21,265,887
Ensembl chr38:21,262,789...21,265,887 		JBrowse link
G APOC2 apolipoprotein C2 involved_in ISO (PMID:15778093) BHF-UCL PMID:15778093 NCBI chr 1:110,504,806...110,506,986
Ensembl chr 1:110,504,815...110,506,961 		JBrowse link
G APOE apolipoprotein E involved_in ISO (PMID:210175) BHF-UCL PMID:210175 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440 		JBrowse link
G APOM apolipoprotein M involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:1,137,474...1,142,337
Ensembl chr12:1,140,316...1,142,331 		JBrowse link
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355 		JBrowse link
G SCARB1 scavenger receptor class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:5,035,797...5,122,383
Ensembl chr26:5,049,407...5,121,468 		JBrowse link
negative regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC3 apolipoprotein C3 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:16,744,423...16,746,992
Ensembl chr 5:16,744,423...16,746,992 		JBrowse link
G MIR185 microRNA mir-185 involved_in ISO (PMID:23459944) BHF-UCL PMID:23459944 NCBI chr26:29,296,014...29,296,069
Ensembl chr26:29,296,004...29,296,079 		JBrowse link
G MIR223 microRNA mir-223 involved_in ISO (PMID:23459944) BHF-UCL PMID:23459944 NCBI chr  X:50,838,131...50,838,233
Ensembl chr  X:50,838,131...50,838,233 		JBrowse link
G MIR96 microRNA mir-96 involved_in ISO (PMID:23459944) BHF-UCL PMID:23459944 NCBI chr14:7,068,754...7,068,842
Ensembl chr14:7,068,754...7,068,842 		JBrowse link
positive regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (MGI:3617276|PMID:16219662) UniProt PMID:16219662 MGI:3617276 NCBI chr35:22,495,001...22,556,264
Ensembl chr35:22,495,073...22,554,105 		JBrowse link
G LIPG lipase G, endothelial type involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:79,201,514...79,221,090
Ensembl chr 7:79,201,496...79,222,552 		JBrowse link
G MIR33B microRNA mir-33b involved_in ISO (PMID:24931346) BHF-UCL PMID:24931346 NCBI chr 5:41,685,165...41,685,258
Ensembl chr 5:41,685,165...41,685,258 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    multicellular organismal process 8083
      plasma lipoprotein particle clearance 48
        high-density lipoprotein particle clearance 13
          negative regulation of high-density lipoprotein particle clearance 4
          positive regulation of high-density lipoprotein particle clearance 3
          regulation of high-density lipoprotein particle clearance + 7
Path 2
Term Annotations click to browse term
  biological_process 17917
    biological regulation 12438
      regulation of biological process 12078
        regulation of plasma lipoprotein particle levels 80
          plasma lipoprotein particle clearance 48
            high-density lipoprotein particle clearance 13
              negative regulation of high-density lipoprotein particle clearance 4
              positive regulation of high-density lipoprotein particle clearance 3
              regulation of high-density lipoprotein particle clearance + 7
paths to the root