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ONTOLOGY REPORT - ANNOTATIONS

Term:plasma lipoprotein particle clearance
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Accession:GO:0034381 term browser browse the term
Definition:The process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
Synonyms:exact_synonym: lipoprotein particle clearance

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plasma lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule IMP (MGI:2447499|PMID:12376530) BHF-UCL PMID:12376530 MGI:2447499 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801 		JBrowse link
G Ldlr low density lipoprotein receptor IDA (MGI:5902678|PMID:22383525) ARUK-UCL PMID:22383525 MGI:5902678 NCBI chr 9:21,723,576...21,749,919
Ensembl chr 9:21,723,483...21,749,919 		JBrowse link
G Msr1 macrophage scavenger receptor 1 IMP
IBA		 (MGI:2447499|PMID:12376530)
(MGI:6201960|PMID:21873635)		 BHF-UCL
GO_Central		 PMID:12376530 PMID:21873635 MGI:2447499 MGI:6201960 NCBI chr 8:39,543,232...39,642,750
Ensembl chr 8:39,581,685...39,642,673 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:125,277,087...125,341,094
Ensembl chr 5:125,277,087...125,341,094 		JBrowse link
chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C-I ISO (PMID:4020294) BHF-UCL PMID:4020294 NCBI chr 7:19,689,480...19,692,659
Ensembl chr 7:19,689,481...19,692,660 		JBrowse link
G Apoc2 apolipoprotein C-II ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:19,671,579...19,677,941
Ensembl chr 7:19,671,579...19,677,941 		JBrowse link
G Apoc3 apolipoprotein C-III ISO (PMID:4020294) BHF-UCL PMID:4020294 NCBI chr 9:46,233,050...46,235,636
Ensembl chr 9:46,232,933...46,235,636 		JBrowse link
G Apoe apolipoprotein E ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,696,244...19,701,310
Ensembl chr 7:19,696,109...19,699,188 		JBrowse link
G Lipc lipase, hepatic ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 9:70,798,128...70,952,221
Ensembl chr 9:70,798,128...70,952,226 		JBrowse link
G Lmf1 lipase maturation factor 1 IMP (MGI:55554|PMID:6857276) MGI PMID:6857276 MGI:55554 NCBI chr17:25,579,174...25,662,831
Ensembl chr17:25,579,085...25,662,826 		JBrowse link
high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa2 apolipoprotein A-II ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:171,221,564...171,226,379
Ensembl chr 1:171,225,054...171,226,379 		JBrowse link
G Apoc2 apolipoprotein C-II IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:19,671,579...19,677,941
Ensembl chr 7:19,671,579...19,677,941 		JBrowse link
G Apoe apolipoprotein E ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,696,244...19,701,310
Ensembl chr 7:19,696,109...19,699,188 		JBrowse link
G Apom apolipoprotein M IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:3575626|PMID:15793583)		 GO_Central
BHF-UCL		 PMID:15793583 PMID:21873635 MGI:3575626 MGI:6201960 NCBI chr17:35,128,997...35,131,801
Ensembl chr17:35,128,997...35,132,050 		JBrowse link
G Ldlr low density lipoprotein receptor IGI (MGI:5896906|PMID:25524771) BHF-UCL PMID:25524771 MGI:5896906 NCBI chr 9:21,723,576...21,749,919
Ensembl chr 9:21,723,483...21,749,919 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISS
ISO		 (MGI:894255|PMID:9211901) BHF-UCL
MGI		 PMID:9211901 GO_REF:0000096 MGI:4834177 MGI:894255 NCBI chr 5:125,277,087...125,341,094
Ensembl chr 5:125,277,087...125,341,094 		JBrowse link
intermediate-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,696,244...19,701,310
Ensembl chr 7:19,696,109...19,699,188 		JBrowse link
low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:23,146,536...23,157,968
Ensembl chr16:23,146,536...23,158,028 		JBrowse link
G Apob apolipoprotein B ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:7,977,629...8,016,839
Ensembl chr12:7,977,648...8,016,835 		JBrowse link
G Cd36 CD36 molecule ISO
IMP
IBA		 (MGI:3836139|PMID:10772654)
(MGI:6201960|PMID:21873635)		 MGI
BHF-UCL
GO_Central		 PMID:10772654 PMID:21873635 GO_REF:0000096 MGI:3836139 MGI:4834177 MGI:6201960 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801 		JBrowse link
G Commd1 COMM domain containing 1 IMP (MGI:5806548|PMID:26965651) MGI PMID:26965651 MGI:5806548 NCBI chr11:22,899,728...22,984,539
Ensembl chr11:22,896,136...22,982,382 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 IMP (MGI:3784112|PMID:18175806) BHF-UCL PMID:18175806 MGI:3784112 NCBI chr 7:99,153,663...99,182,713
Ensembl chr 7:99,153,658...99,182,719 		JBrowse link
G Ehd1 EH-domain containing 1 IMP (MGI:3711403|PMID:17451652) BHF-UCL PMID:17451652 MGI:3711403 NCBI chr19:6,276,896...6,300,096
Ensembl chr19:6,276,725...6,300,096 		JBrowse link
G Ldlr low density lipoprotein receptor ISO
IDA
IMP		 (MGI:5806548|PMID:26965651)
(MGI:3784112|PMID:18175806)		 MGI
BHF-UCL		 PMID:18175806 PMID:26965651 GO_REF:0000096 MGI:3784112 MGI:4834177 MGI:5806548 NCBI chr 9:21,723,576...21,749,919
Ensembl chr 9:21,723,483...21,749,919 		JBrowse link
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:134,741,554...134,768,032
Ensembl chr 4:134,741,554...134,768,024 		JBrowse link
G Lipc lipase, hepatic ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 9:70,798,128...70,952,221
Ensembl chr 9:70,798,128...70,952,226 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 IMP (MGI:3784112|PMID:18175806) BHF-UCL PMID:18175806 MGI:3784112 NCBI chr 5:125,277,087...125,341,094
Ensembl chr 5:125,277,087...125,341,094 		JBrowse link
G Washc1 WASH complex subunit 1 IMP (MGI:5806548|PMID:26965651) MGI PMID:26965651 MGI:5806548 NCBI chr17:66,111,529...66,120,503
Ensembl chr17:66,111,545...66,120,503 		JBrowse link
negative regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc3 apolipoprotein C-III IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:46,233,050...46,235,636
Ensembl chr 9:46,232,933...46,235,636 		JBrowse link
negative regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 7:46,104,523...46,180,039
Ensembl chr 7:46,104,523...46,180,033 		JBrowse link
G Apoc3 apolipoprotein C-III IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:46,233,050...46,235,636
Ensembl chr 9:46,232,933...46,235,636 		JBrowse link
G Csk c-src tyrosine kinase ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 9:57,626,646...57,653,631
Ensembl chr 9:57,626,646...57,653,631 		JBrowse link
G Il19 interleukin 19 IMP (MGI:6102526|PMID:28257760) BHF-UCL PMID:28257760 MGI:6102526 NCBI chr 1:130,932,656...130,945,457
Ensembl chr 1:130,932,656...130,940,115 		JBrowse link
G Khsrp KH-type splicing regulatory protein ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:57,021,049...57,031,507
Ensembl chr17:57,021,051...57,031,522 		JBrowse link
G Mylip myosin regulatory light chain interacting protein IDA (MGI:3849777|PMID:19520913) BHF-UCL PMID:19520913 MGI:3849777 NCBI chr13:45,389,742...45,411,940
Ensembl chr13:45,389,742...45,412,022 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:106,442,334...106,464,325
Ensembl chr 4:106,442,329...106,464,329 		JBrowse link
negative regulation of very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C-I IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:19,689,480...19,692,659
Ensembl chr 7:19,689,481...19,692,660 		JBrowse link
G Apoc2 apolipoprotein C-II ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:19,671,579...19,677,941
Ensembl chr 7:19,671,579...19,677,941 		JBrowse link
G Apoc3 apolipoprotein C-III IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:46,233,050...46,235,636
Ensembl chr 9:46,232,933...46,235,636 		JBrowse link
G Lrpap1 low density lipoprotein receptor-related protein associated protein 1 ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:35,091,490...35,105,699
Ensembl chr 5:35,091,501...35,105,766 		JBrowse link
oxidised low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801 		JBrowse link
positive regulation of chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpihbp1 GPI-anchored HDL-binding protein 1 IMP (MGI:3770110|PMID:17403372) BHF-UCL PMID:17403372 MGI:3770110 NCBI chr15:75,596,630...75,598,213
Ensembl chr15:75,596,628...75,599,481 		JBrowse link
positive regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 IMP (MGI:3617276|PMID:16219662) UniProt PMID:16219662 MGI:3617276 NCBI chr13:24,937,785...24,991,936
Ensembl chr13:24,943,152...24,992,501 		JBrowse link
G Lipg lipase, endothelial ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:74,939,322...74,961,263
Ensembl chr18:74,939,322...74,961,263 		JBrowse link
positive regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO
IMP		 (MGI:5446858|PMID:22848640) MGI
BHF-UCL		 PMID:22848640 GO_REF:0000096 MGI:4834177 MGI:5446858 NCBI chr 9:69,453,683...69,491,792
Ensembl chr 9:69,453,620...69,491,795 		JBrowse link
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:134,741,554...134,768,032
Ensembl chr 4:134,741,554...134,768,024 		JBrowse link
regulation of chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1g carboxylesterase 1G IMP (MGI:5484835|PMID:23145182) MGI PMID:23145182 MGI:5484835 NCBI chr 8:93,302,369...93,337,209
Ensembl chr 8:93,302,369...93,337,308 		JBrowse link
regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnpy2 canopy FGF signaling regulator 2 IMP (MGI:5427047|PMID:22378787) BHF-UCL PMID:22378787 MGI:5427047 NCBI chr10:128,322,158...128,327,187
Ensembl chr10:128,322,459...128,327,553 		JBrowse link
G Crp C-reactive protein, pentraxin-related ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:172,698,056...172,699,966
Ensembl chr 1:172,698,055...172,833,031 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:58,391,132...58,403,343
Ensembl chr13:58,391,142...58,403,343 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:89,454,234...89,533,645
Ensembl chr10:89,454,234...89,533,585 		JBrowse link
triglyceride-rich lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E IMP
ISO		 (MGI:5514108|PMID:23676495) UniProt
MGI		 PMID:23676495 GO_REF:0000096 MGI:4834177 MGI:5514108 NCBI chr 7:19,696,244...19,701,310
Ensembl chr 7:19,696,109...19,699,188 		JBrowse link
very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C-I IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:19,689,480...19,692,659
Ensembl chr 7:19,689,481...19,692,660 		JBrowse link
G Apoe apolipoprotein E ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:19,696,244...19,701,310
Ensembl chr 7:19,696,109...19,699,188 		JBrowse link
G Vldlr very low density lipoprotein receptor ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:27,216,480...27,254,231
Ensembl chr19:27,216,484...27,254,231 		JBrowse link
Term paths to the root