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ONTOLOGY REPORT - ANNOTATIONS


Term:plasma lipoprotein particle clearance
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Accession:GO:0034381 term browser browse the term
Definition:The process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
Synonyms:exact_synonym: lipoprotein particle clearance


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plasma lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD36 CD36 molecule ISO (MGI:2447499|PMID:12376530) BHF-UCL PMID:12376530 MGI:2447499 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865
JBrowse link
G LDLR low density lipoprotein receptor ISO (MGI:5902678|PMID:22383525) ARUK-UCL PMID:22383525 MGI:5902678 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G MSR1 macrophage scavenger receptor 1 ISO (MGI:2447499|PMID:12376530) BHF-UCL PMID:12376530 MGI:2447499 NCBI chr 8:15,335,795...15,421,472
Ensembl chr 8:12,088,873...12,175,927
JBrowse link
chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC1 apolipoprotein C1 ISO (PMID:4020294) BHF-UCL PMID:4020294 NCBI chr19:41,862,168...41,878,231 JBrowse link
G APOC2 apolipoprotein C2 ISO (PMID:4020294) BHF-UCL PMID:4020294 NCBI chr19:41,892,954...41,896,461 JBrowse link
G APOC3 apolipoprotein C3 ISO (PMID:4020294) BHF-UCL PMID:4020294 NCBI chr11:111,667,816...111,670,861
Ensembl chr11:115,600,416...115,603,460
JBrowse link
G APOE apolipoprotein E ISO (PMID:7175379)
(PMID:1911868)
BHF-UCL
UniProt
PMID:1911868 PMID:7175379 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:8192680 RGD:2308768 NCBI chr15:37,363,507...37,537,723
Ensembl chr15:55,814,017...55,847,005
JBrowse link
G LMF1 lipase maturation factor 1 ISO (MGI:55554|PMID:6857276) MGI PMID:6857276 MGI:55554 Ensembl chr16:869,449...973,456 JBrowse link
high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA2 apolipoprotein A2 ISO (PMID:10764676) BHF-UCL PMID:10764676 NCBI chr 1:136,634,754...136,636,122
Ensembl chr 1:140,546,591...140,547,959
JBrowse link
G APOC2 apolipoprotein C2 ISO (PMID:15778093) BHF-UCL PMID:15778093 NCBI chr19:41,892,954...41,896,461 JBrowse link
G APOE apolipoprotein E ISO (PMID:210175) BHF-UCL PMID:210175 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G APOM apolipoprotein M ISO (MGI:3575626|PMID:15793583) BHF-UCL PMID:15793583 MGI:3575626 NCBI chr 6:31,313,543...31,319,374
Ensembl chr 6:32,206,514...32,209,249
JBrowse link
G LDLR low density lipoprotein receptor ISO (MGI:5896906|PMID:25524771) BHF-UCL PMID:25524771 MGI:5896906 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G SCARB1 scavenger receptor class B member 1 ISO (PMID:9211901) BHF-UCL PMID:9211901 NCBI chr12:122,293,803...122,455,314
Ensembl chr12:126,659,532...126,694,767
JBrowse link
intermediate-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E ISO (PMID:1917954) UniProt PMID:1917954 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOQ adiponectin, C1Q and collagen domain containing ISO (PMID:11222466) BHF-UCL PMID:11222466 NCBI chr 3:183,876,051...183,889,723
Ensembl chr 3:192,341,320...192,354,885
JBrowse link
G APOB apolipoprotein B ISO (PMID:15797858), (PMID:2563166) BHF-UCL PMID:2563166 PMID:15797858 NCBI chr2A:20,986,464...21,029,004
Ensembl chr2A:21,100,356...21,145,129
JBrowse link
G CD36 CD36 molecule ISO (PMID:10772654)
(MGI:3836139|PMID:10772654)
BHF-UCL PMID:10772654 MGI:3836139 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865
JBrowse link
G COMMD1 copper metabolism domain containing 1 ISO (MGI:5806548|PMID:26965651) MGI PMID:26965651 MGI:5806548 NCBI chr2A:61,970,830...62,216,677
Ensembl chr2A:63,121,521...63,349,131
JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 ISO (MGI:3784112|PMID:18175806) BHF-UCL PMID:18175806 MGI:3784112 NCBI chr11:70,824,791...70,857,530
Ensembl chr11:74,126,169...74,158,854
JBrowse link
G EHD1 EH domain containing 1 ISO (MGI:3711403|PMID:17451652) BHF-UCL PMID:17451652 MGI:3711403 NCBI chr11:60,208,840...60,236,513
Ensembl chr11:63,547,286...63,577,252
JBrowse link
G LDLR low density lipoprotein receptor ISO (PMID:17142622), (PMID:6299582)
(MGI:5806548|PMID:26965651)
(MGI:3784112|PMID:18175806)
BHF-UCL
MGI
PMID:6299582 PMID:17142622 PMID:18175806 PMID:26965651 MGI:3784112 MGI:5806548 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G LDLRAP1 low density lipoprotein receptor adaptor protein 1 ISO (PMID:12417523), (PMID:12464675), (PMID:15166224) BHF-UCL PMID:12417523 PMID:12464675 PMID:15166224 NCBI chr 1:24,809,535...24,852,394
Ensembl chr 1:25,878,358...25,903,336
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:8071607 RGD:2308769 NCBI chr15:37,363,507...37,537,723
Ensembl chr15:55,814,017...55,847,005
JBrowse link
G SCARB1 scavenger receptor class B member 1 ISO (MGI:3784112|PMID:18175806) BHF-UCL PMID:18175806 MGI:3784112 NCBI chr12:122,293,803...122,455,314
Ensembl chr12:126,659,532...126,694,767
JBrowse link
negative regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC3 apolipoprotein C3 ISO (PMID:15778093) BHF-UCL PMID:15778093 NCBI chr11:111,667,816...111,670,861
Ensembl chr11:115,600,416...115,603,460
JBrowse link
negative regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC8 ATP binding cassette subfamily C member 8 ISO RGD PMID:23828271 RGD:12792253 NCBI chr11:17,447,564...17,531,513
Ensembl chr11:17,133,063...17,216,870
JBrowse link
G APOC3 apolipoprotein C3 ISO (PMID:15778093) BHF-UCL PMID:15778093 NCBI chr11:111,667,816...111,670,861
Ensembl chr11:115,600,416...115,603,460
JBrowse link
G CSK C-terminal Src kinase ISO RGD PMID:10884975 RGD:5134370 NCBI chr15:53,724,814...53,745,710
Ensembl chr15:73,342,703...73,363,476
JBrowse link
G IL19 interleukin 19 ISO (MGI:6102526|PMID:28257760) BHF-UCL PMID:28257760 MGI:6102526 NCBI chr 1:182,372,339...182,446,147
Ensembl chr 1:186,651,640...186,724,748
JBrowse link
G KHSRP KH-type splicing regulatory protein ISO (PMID:26523989) BHF-UCL PMID:26523989 NCBI chr19:5,433,989...5,445,721 JBrowse link
G MYLIP myosin regulatory light chain interacting protein ISO (MGI:3849777|PMID:19520913) BHF-UCL PMID:19520913 MGI:3849777 NCBI chr 6:15,985,844...16,005,043
Ensembl chr 6:16,350,852...16,370,253
JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 ISO (PMID:17328821), (PMID:22848640) BHF-UCL PMID:17328821 PMID:22848640 NCBI chr 1:54,323,036...54,355,397
Ensembl chr 1:55,911,016...55,936,456
JBrowse link
negative regulation of very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC1 apolipoprotein C1 ISO (PMID:1917954) BHF-UCL PMID:1917954 NCBI chr19:41,862,168...41,878,231 JBrowse link
G APOC2 apolipoprotein C2 ISO (PMID:1917954) BHF-UCL PMID:1917954 NCBI chr19:41,892,954...41,896,461 JBrowse link
G APOC3 apolipoprotein C3 ISO (PMID:1917954) BHF-UCL PMID:1917954 NCBI chr11:111,667,816...111,670,861
Ensembl chr11:115,600,416...115,603,460
JBrowse link
G LRPAP1 LDL receptor related protein associated protein 1 ISO (PMID:8083232) BHF-UCL PMID:8083232 NCBI chr 4:3,663,649...3,683,450
Ensembl chr 4:3,646,179...3,666,098
JBrowse link
oxidised low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD36 CD36 molecule ISO (PMID:27607416) ARUK-UCL PMID:27607416 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865
JBrowse link
positive regulation of chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 ISO (MGI:3770110|PMID:17403372) BHF-UCL PMID:17403372 MGI:3770110 NCBI chr 8:139,960,255...139,964,189
Ensembl chr 8:142,980,151...142,985,429
JBrowse link
positive regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 ISO (MGI:3617276|PMID:16219662) UniProt PMID:16219662 MGI:3617276 NCBI chr 6:24,257,923...24,332,171
Ensembl chr 6:24,588,672...24,665,229
JBrowse link
G LIPG lipase G, endothelial type ISO (PMID:19136670) BHF-UCL PMID:19136670 NCBI chr18:42,942,132...42,972,112
Ensembl chr18:46,292,154...46,320,652
JBrowse link
positive regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 ISO (PMID:22848640)
(MGI:5446858|PMID:22848640)
BHF-UCL PMID:22848640 MGI:5446858 NCBI chr15:39,322,303...39,371,565
Ensembl chr15:57,625,425...57,674,250
JBrowse link
G LDLRAP1 low density lipoprotein receptor adaptor protein 1 ISO (PMID:28257760) BHF-UCL PMID:28257760 NCBI chr 1:24,809,535...24,852,394
Ensembl chr 1:25,878,358...25,903,336
JBrowse link
regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNPY2 canopy FGF signaling regulator 2 ISO (MGI:5427047|PMID:22378787) BHF-UCL PMID:22378787 MGI:5427047 NCBI chr12:32,599,047...32,604,934
Ensembl chr12:32,851,796...32,857,607
JBrowse link
G CRP C-reactive protein ISO RGD PMID:8305421 RGD:9586002 NCBI chr 1:135,062,102...135,064,402 JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO (PMID:20371611) BHF-UCL PMID:20371611 NCBI chr 9:40,898,593...40,911,159
Ensembl chr 9:83,324,238...83,336,756
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO (PMID:12660231) UniProtKB PMID:12660231 NCBI chr12:98,052,778...98,144,085
Ensembl chr12:101,457,885...101,548,058
JBrowse link
triglyceride-rich lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E ISO (PMID:23676495)
(MGI:5514108|PMID:23676495)
UniProt PMID:23676495 MGI:5514108 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOC1 apolipoprotein C1 ISO (PMID:15576844) BHF-UCL PMID:15576844 NCBI chr19:41,862,168...41,878,231 JBrowse link
G APOE apolipoprotein E ISO (PMID:9649566)
(PMID:1917954), (PMID:2762297)
BHF-UCL
UniProt
PMID:1917954 PMID:2762297 PMID:9649566 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G VLDLR very low density lipoprotein receptor ISO (PMID:8083232) BHF-UCL PMID:8083232 NCBI chr 9:2,428,639...2,463,796
Ensembl chr 9:2,621,199...2,653,980
JBrowse link

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