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ONTOLOGY REPORT - ANNOTATIONS


Term:plasma lipoprotein particle clearance
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Accession:GO:0034381 term browser browse the term
Definition:The process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
Synonyms:exact_synonym: lipoprotein particle clearance


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plasma lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule ISO (MGI:2447499|PMID:12376530) RGD PMID:12376530 MGI:2447499 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Ldlr low density lipoprotein receptor ISO (MGI:5902678|PMID:22383525) RGD PMID:22383525 MGI:5902678 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Msr1 macrophage scavenger receptor 1 IBA
ISO
PMID:21873635
(MGI:2447499|PMID:12376530)
RGD PMID:12376530, PMID:21873635 MGI:2447499, RGD:13792537 NCBI chr16:56,817,714...56,900,025
Ensembl chr16:56,813,791...56,900,052
JBrowse link
chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 ISO (PMID:4020294) RGD PMID:4020294 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
G Apoc2 apolipoprotein C2 ISO
IBA
(PMID:4020294)
PMID:21873635
RGD PMID:4020294, PMID:21873635 RGD:13792537 NCBI chr 1:80,589,023...80,593,991
Ensembl chr 1:80,589,023...80,594,136
JBrowse link
G Apoc3 apolipoprotein C3 ISO
IEA
(PMID:4020294)
GO_REF:0000107
RGD
Ensembl
PMID:4020294 GO_REF:0000107 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Apoe apolipoprotein E IEA
ISO
ISS
GO_REF:0000107
(PMID:1911868), (PMID:7175379)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:1911868, PMID:7175379 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Lipc lipase C, hepatic type IDA RGD PMID:8192680 RGD:2308768 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Lmf1 lipase maturation factor 1 ISO MGI:1856820 (MGI:55554|PMID:6857276) RGD PMID:6857276 MGI:55554 NCBI chr10:14,945,185...15,031,855
Ensembl chr10:14,945,265...15,031,942
JBrowse link
high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa2 apolipoprotein A2 ISO (PMID:10764676) RGD PMID:10764676 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoc2 apolipoprotein C2 ISO
IBA
(PMID:15778093)
PMID:21873635
RGD PMID:15778093, PMID:21873635 RGD:13792537 NCBI chr 1:80,589,023...80,593,991
Ensembl chr 1:80,589,023...80,594,136
JBrowse link
G Apoe apolipoprotein E ISO
IEA
(PMID:210175)
GO_REF:0000107
RGD
Ensembl
PMID:210175 GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Apom apolipoprotein M IBA
ISO
PMID:21873635
(MGI:3575626|PMID:15793583)
RGD PMID:15793583, PMID:21873635 MGI:3575626, RGD:13792537 NCBI chr20:5,120,473...5,123,073
Ensembl chr20:5,120,474...5,123,073
JBrowse link
G Ldlr low density lipoprotein receptor IEA
ISO
GO_REF:0000107
RNAcentral:URS0000070CD2_10090 (MGI:5896906|PMID:25524771)
Ensembl
RGD
PMID:25524771 GO_REF:0000107, MGI:5896906 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO
ISS
(PMID:9211901)
GO_REF:0000024
RGD
BHF-UCL
PMID:9211901 GO_REF:0000024 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
intermediate-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E ISS
ISO
IEA
GO_REF:0000024
(PMID:1917954)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:1917954 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:11222466)
GO_REF:0000024
RGD
UniProt
PMID:11222466 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Apob apolipoprotein B ISO (PMID:15797858), (PMID:2563166) RGD PMID:2563166, PMID:15797858 NCBI chr 6:33,176,826...33,216,381
Ensembl chr 6:33,176,778...33,224,997
JBrowse link
G Cd36 CD36 molecule ISO (PMID:10772654)
(MGI:3836139|PMID:10772654)
RGD PMID:10772654 MGI:3836139 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
G Commd1 copper metabolism domain containing 1 ISO MGI:2176228|MGI:5315712 (MGI:5806548|PMID:26965651) RGD PMID:26965651 MGI:5806548 NCBI chr14:107,664,321...107,759,974
Ensembl chr14:107,664,255...107,760,191
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Ehd1 EH-domain containing 1 ISO (MGI:3711403|PMID:17451652) RGD PMID:17451652 MGI:3711403 NCBI chr 1:221,644,867...221,667,242
Ensembl chr 1:221,644,867...221,667,239
JBrowse link
G Ldlr low density lipoprotein receptor IEA
ISO
GO_REF:0000107
(MGI:3784112|PMID:18175806), (MGI:5806548|PMID:26965651)
(PMID:17142622), (PMID:6299582)
Ensembl
RGD
PMID:6299582, PMID:17142622, PMID:18175806, PMID:26965651 GO_REF:0000107, MGI:3784112, MGI:5806548 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 ISO (PMID:12417523), (PMID:12464675), (PMID:15166224) RGD PMID:12417523, PMID:12464675, PMID:15166224 NCBI chr 5:152,964,294...152,987,286
Ensembl chr 5:152,966,591...152,987,211
JBrowse link
G Lipc lipase C, hepatic type IDA RGD PMID:8071607 RGD:2308769 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
G Washc1 WASH complex subunit 1 IEA
ISO
GO_REF:0000107
(MGI:5806548|PMID:26965651)
Ensembl
RGD
PMID:26965651 GO_REF:0000107, MGI:5806548 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
JBrowse link
negative regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc3 apolipoprotein C3 ISO
IBA
IEA
(PMID:15778093)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15778093, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
negative regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:23828271 RGD:12792253 NCBI chr 1:102,110,708...102,191,287
Ensembl chr 1:102,110,708...102,191,287
JBrowse link
G Apoc3 apolipoprotein C3 ISO
IBA
IEA
(PMID:15778093)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15778093, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10884975 RGD:5134370 NCBI chr 8:62,405,714...62,424,707
Ensembl chr 8:62,405,715...62,424,303
JBrowse link
G Il19 interleukin 19 ISO (MGI:6102526|PMID:28257760) RGD PMID:28257760 MGI:6102526 NCBI chr13:47,663,592...47,677,869
Ensembl chr13:47,664,080...47,670,407
JBrowse link
G Khsrp KH-type splicing regulatory protein IEA
ISO
GO_REF:0000107
RNAcentral:URS00004176D4_9606 (PMID:26523989)
Ensembl
RGD
PMID:26523989 GO_REF:0000107 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Mylip myosin regulatory light chain interacting protein ISO (MGI:3849777|PMID:19520913) RGD PMID:19520913 MGI:3849777 NCBI chr17:19,682,040...19,703,681
Ensembl chr17:19,682,040...19,703,681
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 ISO (PMID:17328821), (PMID:22848640) RGD PMID:17328821, PMID:22848640 NCBI chr 5:126,031,368...126,053,726
Ensembl chr 5:126,031,368...126,053,726
JBrowse link
negative regulation of very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 ISO
IBA
(PMID:1917954)
PMID:21873635
RGD PMID:1917954, PMID:21873635 RGD:13792537 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
G Apoc2 apolipoprotein C2 ISO
IBA
(PMID:1917954)
PMID:21873635
RGD PMID:1917954, PMID:21873635 RGD:13792537 NCBI chr 1:80,589,023...80,593,991
Ensembl chr 1:80,589,023...80,594,136
JBrowse link
G Apoc3 apolipoprotein C3 ISO
IBA
IEA
(PMID:1917954)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:1917954, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:50,529,318...50,531,498
Ensembl chr 8:50,529,318...50,531,498
JBrowse link
G LOC100910181 apolipoprotein C-I-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lrpap1 LDL receptor related protein associated protein 1 ISO
IBA
(PMID:8083232)
PMID:21873635
RGD PMID:8083232, PMID:21873635 RGD:13792537 NCBI chr14:80,911,281...80,923,290
Ensembl chr14:80,911,270...80,924,831
JBrowse link
G NEWGENE_2134 apolipoprotein C1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,606,634...80,609,954
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
oxidised low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule ISO (PMID:27607416) RGD PMID:27607416 NCBI chr 4:14,150,309...14,191,498
Ensembl chr 4:14,001,761...14,249,749
JBrowse link
positive regulation of chylomicron remnant clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpihbp1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 ISO (MGI:3770110|PMID:17403372) RGD PMID:17403372 MGI:3770110 NCBI chr 7:116,632,496...116,635,543
Ensembl chr 7:116,632,506...116,634,293
JBrowse link
positive regulation of high-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 ISS
ISO
GO_REF:0000024
(MGI:3617276|PMID:16219662)
UniProt
RGD
PMID:16219662 GO_REF:0000024, MGI:3617276 NCBI chr17:42,085,027...42,131,344
Ensembl chr17:42,085,028...42,127,678
JBrowse link
G Lipg lipase G, endothelial type ISO (PMID:19136670) RGD PMID:19136670 NCBI chr18:70,903,528...70,924,434
Ensembl chr18:70,901,710...70,924,708
JBrowse link
positive regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO (PMID:22848640)
(MGI:5446858|PMID:22848640)
RGD PMID:22848640 MGI:5446858 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 ISO (PMID:28257760) RGD PMID:28257760 NCBI chr 5:152,964,294...152,987,286
Ensembl chr 5:152,966,591...152,987,211
JBrowse link
regulation of low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnpy2 canopy FGF signaling regulator 2 ISO (MGI:5427047|PMID:22378787) RGD PMID:22378787 MGI:5427047 NCBI chr 7:2,737,674...2,744,321
Ensembl chr 7:2,737,765...2,742,369
JBrowse link
G Crp C-reactive protein IDA RGD PMID:8305421 RGD:9586002 NCBI chr13:91,080,448...91,081,358
Ensembl chr13:91,054,974...91,093,713
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO (PMID:20371611) RGD PMID:20371611 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEA
ISO
GO_REF:0000107
(PMID:12660231)
Ensembl
RGD
PMID:12660231 GO_REF:0000107 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
triglyceride-rich lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E ISS
ISO
GO_REF:0000024
(MGI:5514108|PMID:23676495)
(PMID:23676495)
UniProt
RGD
PMID:23676495 GO_REF:0000024, MGI:5514108 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
very-low-density lipoprotein particle clearance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 ISO
IBA
(PMID:15576844)
PMID:21873635
RGD PMID:15576844, PMID:21873635 RGD:13792537 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
G Apoe apolipoprotein E IEA
ISO
ISS
GO_REF:0000107
(PMID:1917954), (PMID:2762297), (PMID:9649566)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:1917954, PMID:2762297, PMID:9649566 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G LOC100910181 apolipoprotein C-I-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G NEWGENE_2134 apolipoprotein C1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,606,634...80,609,954
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
G Vldlr very low density lipoprotein receptor ISO
ISS
IEA
(PMID:8083232)
GO_REF:0000024
GO_REF:0000107
RGD
BHF-UCL
Ensembl
PMID:8083232 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:245,236,819...245,273,688
Ensembl chr 1:245,237,736...245,269,205
JBrowse link

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.