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ONTOLOGY REPORT - ANNOTATIONS

Term:high-density lipoprotein particle assembly
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Accession:GO:0034380 term browser browse the term
Definition:The non-covalent aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle.
Synonyms:exact_synonym: HDL assembly


show annotations for term's descendants           Sort by:
high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:10431236), (PMID:14754908), (PMID:17305370) RGD PMID:10431236 PMID:14754908 PMID:17305370 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170 		JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14570867)		 Alzheimers_University_of_Toronto
Ensembl
RGD		 PMID:14570867 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA		 (PMID:190223)
GO_REF:0000107		 RGD
Ensembl		 PMID:190223 GO_REF:0000107 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoa2 apolipoprotein A2 involved_in ISO (PMID:218942) RGD PMID:218942 NCBI chr13:83,644,460...83,646,358
Ensembl chr13:83,644,470...83,646,355 		JBrowse link
G Apoe apolipoprotein E involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:14754908), (PMID:17305370)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:14754908 PMID:17305370 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Apom apolipoprotein M involved_in ISO
IEA
IBA		 (MGI:3575626|PMID:15793583)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:15793583 GO_REF:0000033 GO_REF:0000118 MGI:3575626 NCBI chr20:3,690,950...3,693,550
Ensembl chr20:3,688,413...3,693,550 		JBrowse link
positive regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (MGI:5427333|PMID:22179027) RGD PMID:22179027 MGI:5427333 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 involved_in ISO
IEA		 (MGI:3720271|PMID:17657314), (MGI:3794353|PMID:16825483)
GO_REF:0000107		 RGD
Ensembl		 PMID:16825483 PMID:17657314 GO_REF:0000107 MGI:3720271 MGI:3794353 NCBI chr 1:95,041,967...95,047,358
Ensembl chr 1:95,041,967...95,047,377 		JBrowse link
G Pltp phospholipid transfer protein involved_in ISO (PMID:24369175) RGD PMID:24369175 NCBI chr 3:153,574,825...153,592,647
Ensembl chr 3:153,574,825...153,592,647 		JBrowse link
regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcat lecithin cholesterol acyltransferase involved_in ISO
IEA		 (MGI:3848791|PMID:19065001)
GO_REF:0000107		 RGD
Ensembl		 PMID:19065001 GO_REF:0000107 MGI:3848791 NCBI chr19:33,834,748...33,838,214
Ensembl chr19:33,834,403...33,838,231 		JBrowse link
G Mir144 microRNA 144 involved_in ISO UniProtKB:O95477 (PMID:24733347) RGD PMID:24733347 NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    regulation of biological process 13322
      regulation of plasma lipoprotein particle levels 82
        plasma lipoprotein particle assembly 22
          high-density lipoprotein particle assembly 10
            apolipoprotein E recycling 0
            positive regulation of high-density lipoprotein particle assembly 3
            regulation of high-density lipoprotein particle assembly + 5
Path 2
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7290
        cellular component organization 6980
          cellular component assembly 3226
            protein-containing complex assembly 1634
              protein-lipid complex assembly 27
                plasma lipoprotein particle assembly 22
                  high-density lipoprotein particle assembly 10
                    apolipoprotein E recycling 0
                    positive regulation of high-density lipoprotein particle assembly 3
                    regulation of high-density lipoprotein particle assembly + 5
paths to the root