Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:very-low-density lipoprotein particle remodeling
go back to main search page
Accession:GO:0034372 term browser browse the term
Definition:The acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid.
Synonyms:exact_synonym: VLDL remodeling
 related_synonym: IDL formation;   intermediate-density lipoprotein particle formation


show annotations for term's descendants           Sort by:
 
very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 9:44,216,481...44,218,360
Ensembl chr 9:44,216,393...44,218,978 		JBrowse link
G APOA4 apolipoprotein A4 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 9:44,201,587...44,204,072
Ensembl chr 9:44,201,508...44,204,206 		JBrowse link
G APOA5 apolipoprotein A5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:44,177,834...44,180,880 JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:51,373,113...51,375,333
Ensembl chr 6:51,372,259...51,377,794 		JBrowse link
G LCAT lecithin-cholesterol acyltransferase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:28,550,356...28,553,561
Ensembl chr 6:28,550,357...28,553,567 		JBrowse link
G LIPC lipase C, hepatic type involved_in ISO
IEA		 RGD
Ensembl
Ensembl		 PMID:6791934 GO_REF:0000107 RGD:2308780 NCBI chr 1:113,433,684...113,604,139
Ensembl chr 1:113,433,679...113,604,306 		JBrowse link
G LPL lipoprotein lipase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr14:4,104,761...4,134,964
Ensembl chr14:4,104,772...4,135,814 		JBrowse link
G NECTIN2 nectin cell adhesion molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,317,386...51,358,665 JBrowse link
negative regulation of very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 9:44,216,481...44,218,360
Ensembl chr 9:44,216,393...44,218,978 		JBrowse link
G APOA2 apolipoprotein A2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:89,237,514...89,239,126
Ensembl chr 4:89,237,511...89,240,320 		JBrowse link
G APOC3 apolipoprotein C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,211,171...44,213,538 JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6095248|PMID:27471003)
(PMID:27471003)		 MGI
Ensembl
Ensembl		 PMID:27471003 GO_REF:0000107 MGI:6095248 NCBI chr 5:83,607,222...83,732,668
Ensembl chr 5:83,604,288...83,684,604 		JBrowse link
positive regulation of very-low-density lipoprotein particle remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA5 apolipoprotein A5 involved_in ISO (PMID:18635818) BHF-UCL PMID:18635818 NCBI chr 9:44,177,834...44,180,880 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17269
    multicellular organismal process 8458
      plasma lipoprotein particle organization 41
        plasma lipoprotein particle remodeling 27
          triglyceride-rich lipoprotein particle remodeling 11
            very-low-density lipoprotein particle remodeling 11
              negative regulation of very-low-density lipoprotein particle remodeling 4
              positive regulation of very-low-density lipoprotein particle remodeling 1
              regulation of very-low-density lipoprotein particle remodeling + 5
Path 2
Term Annotations click to browse term
  biological_process 17269
    cellular process 16298
      cellular component organization or biogenesis 6282
        cellular component organization 6098
          protein-containing complex organization 1688
            protein-containing complex remodeling 28
              protein-lipid complex remodeling 27
                plasma lipoprotein particle remodeling 27
                  triglyceride-rich lipoprotein particle remodeling 11
                    very-low-density lipoprotein particle remodeling 11
                      negative regulation of very-low-density lipoprotein particle remodeling 4
                      positive regulation of very-low-density lipoprotein particle remodeling 1
                      regulation of very-low-density lipoprotein particle remodeling + 5
paths to the root