Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:high-density lipoprotein particle
go back to main search page
Accession:GO:0034364 term browser browse the term
Definition:A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.
Synonyms:exact_synonym: HDL complex;   HDL particle;   high-density lipoprotein class complex
 related_synonym: HDL2;   HDL3


show annotations for term's descendants           Sort by:
high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 part_of ISO
IBA
IDA		 (PMID:15464323), (PMID:210174), (PMID:21571275), (PMID:3104518), (PMID:9211985)
GO_REF:0000033		 RGD
GO_Central		 PMID:210174 PMID:3104518 PMID:9211985 PMID:15464323 PMID:21571275 More... GO_REF:0000033, RGD:12790643 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoa2 apolipoprotein A2 part_of ISO (PMID:17264082), (PMID:210174), (PMID:3104518) RGD PMID:210174 PMID:3104518 PMID:17264082 NCBI chr13:83,644,460...83,646,358
Ensembl chr13:83,644,470...83,646,355 		JBrowse link
G Apoa4 apolipoprotein A4 part_of ISO
IBA
IEA		 (PMID:3095477)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:3095477 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:46,539,083...46,541,464
Ensembl chr 8:46,539,082...46,541,469 		JBrowse link
G Apoa5 apolipoprotein A5 part_of ISO
IBA
IEA		 (PMID:15528295)
GO_REF:0000033
GO_REF:0000043
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:15528295 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:46,561,180...46,563,818
Ensembl chr 8:46,561,229...46,563,816 		JBrowse link
G Apob apolipoprotein B IDA RGD PMID:12091487 RGD:1626402 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497 		JBrowse link
G Apoc1 apolipoprotein C1 part_of IDA
IEA
IBA
ISO		 GO_REF:0000118
GO_REF:0000033
(PMID:15576844)		 TreeGrafter
GO_Central
RGD		 PMID:15576844 PMID:16282639 GO_REF:0000033 GO_REF:0000118, RGD:2313954 NCBI chr 1:79,347,057...79,350,340
Ensembl chr 1:79,346,136...79,350,375 		JBrowse link
G Apoc2 apolipoprotein C2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:79,329,429...79,334,397
Ensembl chr 1:79,329,428...79,334,476 		JBrowse link
G Apoc4 apolipoprotein C4 part_of ISO
IBA		 (PMID:12700345)
GO_REF:0000033		 RGD
GO_Central		 PMID:12700345 GO_REF:0000033 NCBI chr 1:79,335,745...79,339,942
Ensembl chr 1:79,335,745...79,339,981 		JBrowse link
G Apoe apolipoprotein E part_of IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000043
PMID:9211985
(PMID:14754908), (PMID:210174), (PMID:22138302), (PMID:2280190), (PMID:8071364), (PMID:9211985)
GO_REF:0000107		 GO_Central
UniProt
RGD
Ensembl		 PMID:210174 PMID:2280190 PMID:8071364 PMID:9211985 PMID:14754908 More... GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:12880364, RGD:12790643 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Apof apolipoprotein F part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:700,688...702,130
Ensembl chr 7:700,762...701,946 		JBrowse link
G Apoh apolipoprotein H part_of ISO (PMID:222615) RGD PMID:222615 NCBI chr10:93,342,435...93,356,334
Ensembl chr10:93,310,977...93,356,329 		JBrowse link
G Apom apolipoprotein M part_of ISO
IBA
IEA		 (PMID:22204862)
GO_REF:0000033
GO_REF:0000043
(MGI:5427066|PMID:22204862)		 RGD
GO_Central
UniProt		 PMID:22204862 GO_REF:0000033 GO_REF:0000043 MGI:5427066 NCBI chr20:3,690,950...3,693,550
Ensembl chr20:3,688,413...3,693,550 		JBrowse link
G App amyloid beta precursor protein part_of ISO UniProtKB:P02647 (PMID:22138302), (PMID:9211985) RGD PMID:9211985 PMID:22138302 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:40,084,427...40,132,035
Ensembl chr17:40,084,617...40,126,939 		JBrowse link
G Hdlbp high density lipoprotein binding protein part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:93,948,099...94,018,040
Ensembl chr 9:93,949,913...94,018,048 		JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019 		JBrowse link
G Lcat lecithin cholesterol acyltransferase part_of ISO
IEA		 (PMID:3104518)
GO_REF:0000107		 RGD
Ensembl		 PMID:3104518 GO_REF:0000107 NCBI chr19:33,834,748...33,838,214
Ensembl chr19:33,834,403...33,838,231 		JBrowse link
G Lipc lipase C, hepatic type part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:71,509,633...71,635,663
Ensembl chr 8:71,509,635...71,635,464 		JBrowse link
G Pla2g7 phospholipase A2 group VII part_of ISO (PMID:11590221) RGD PMID:11590221 NCBI chr 9:17,362,214...17,404,476
Ensembl chr 9:17,362,225...17,404,476 		JBrowse link
G Pltp phospholipid transfer protein part_of ISO (PMID:9132017) RGD PMID:9132017 NCBI chr 3:153,574,825...153,592,647
Ensembl chr 3:153,574,825...153,592,647 		JBrowse link
G Pon1 paraoxonase 1 part_of ISO (PMID:15721011) RGD PMID:15721011 NCBI chr 4:33,294,737...33,325,759
Ensembl chr 4:33,294,722...33,321,360 		JBrowse link
G Saa4 serum amyloid A4 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:97,247,580...97,251,882 JBrowse link
G Saal1 serum amyloid A-like 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:97,198,685...97,218,131
Ensembl chr 1:97,198,800...97,222,156 		JBrowse link
discoidal high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 IDA RGD PMID:2493483 RGD:7495790 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoe apolipoprotein E IDA RGD PMID:2493483 RGD:7495790 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Apom apolipoprotein M part_of ISO
IEA		 (PMID:15793583)
GO_REF:0000107
(MGI:3575626|PMID:15793583)		 RGD
Ensembl		 PMID:15793583 GO_REF:0000107 MGI:3575626 NCBI chr20:3,690,950...3,693,550
Ensembl chr20:3,688,413...3,693,550 		JBrowse link
spherical high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 part_of ISO
IEA		 (PMID:16682745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16682745 GO_REF:0000107 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoa2 apolipoprotein A2 part_of ISO
IBA		 (PMID:16682745)
GO_REF:0000033		 RGD
GO_Central		 PMID:16682745 GO_REF:0000033 NCBI chr13:83,644,460...83,646,358
Ensembl chr13:83,644,470...83,646,355 		JBrowse link
G Apoc2 apolipoprotein C2 part_of ISO
IEA
IBA		 (PMID:16682745)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:16682745 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:79,329,429...79,334,397
Ensembl chr 1:79,329,428...79,334,476 		JBrowse link
G Apoc3 apolipoprotein C3 part_of ISO
IEA
IBA		 (PMID:17438339)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:17438339 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583 		JBrowse link
G Apom apolipoprotein M part_of ISO
IEA		 (PMID:16682745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16682745 GO_REF:0000107 NCBI chr20:3,690,950...3,693,550
Ensembl chr20:3,688,413...3,693,550 		JBrowse link
G Clu clusterin part_of ISS
ISO
IEA		 GO_REF:0000024
(PMID:16682745)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16682745 GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315 		JBrowse link
G Pon1 paraoxonase 1 part_of ISO
IEA		 (PMID:16682745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16682745 GO_REF:0000107 NCBI chr 4:33,294,737...33,325,759
Ensembl chr 4:33,294,722...33,321,360 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      extracellular space 2157
        plasma lipoprotein particle 31
          high-density lipoprotein particle 25
            discoidal high-density lipoprotein particle 3
            spherical high-density lipoprotein particle 7
Path 2
Term Annotations click to browse term
  cellular_component 21392
    cellular anatomical entity 21234
      extracellular region 2703
        extracellular space 2157
          plasma lipoprotein particle 31
            high-density lipoprotein particle 25
              discoidal high-density lipoprotein particle 3
              spherical high-density lipoprotein particle 7
paths to the root