Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:primary alcohol catabolic process
go back to main search page
Accession:GO:0034310 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.
Synonyms:exact_synonym: monohydric alcohol catabolic process;   primary alcohol breakdown;   primary alcohol catabolism;   primary alcohol degradation


show annotations for term's descendants           Sort by:
ethanol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1C (class I), gamma polypeptide acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2180100 (MGI:1338643|PMID:10358022), (MGI:54726|PMID:518534)
GO_REF:0000107		 RGD
Ensembl		 PMID:518534 PMID:10358022 GO_REF:0000107 MGI:1338643 MGI:54726 NCBI chr 2:226,797,303...226,808,892
Ensembl chr 2:226,797,303...226,808,892 		JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide IDA RGD PMID:18207224 RGD:5129089 NCBI chr 2:226,975,184...226,987,591
Ensembl chr 2:226,947,466...226,987,591 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180102 (MGI:1338643|PMID:10358022)		 Ensembl
RGD		 PMID:10358022 GO_REF:0000107 MGI:1338643 NCBI chr 2:226,748,724...226,763,183
Ensembl chr 2:226,741,788...226,763,182 		JBrowse link
G Aldh1a7 aldehyde dehydrogenase family 1, subfamily A7 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:218,201,443...218,241,410
Ensembl chr 1:218,201,472...218,248,906 		JBrowse link
G Aldh1b1 aldehyde dehydrogenase 1 family, member B1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:60,063,370...60,068,378
Ensembl chr 5:60,063,225...60,068,378 		JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr12:34,949,549...34,982,527
Ensembl chr12:34,901,219...34,982,521 		JBrowse link
G Aldh3b1 aldehyde dehydrogenase 3 family, member B1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:201,145,309...201,162,675
Ensembl chr 1:201,145,309...201,163,921 		JBrowse link
G Sult1a1 sulfotransferase family 1A member 1 involved_in ISO (PMID:23207770) RGD PMID:23207770 NCBI chr 1:181,272,022...181,276,750
Ensembl chr 1:181,272,023...181,275,562 		JBrowse link
G Sult1b1 sulfotransferase family 1B member 1 involved_in ISO (PMID:23207770) RGD PMID:23207770 NCBI chr14:20,492,763...20,505,491
Ensembl chr14:20,492,708...20,505,483 		JBrowse link
G Sult1e1 sulfotransferase family 1E member 1 involved_in ISO (PMID:23207770) RGD PMID:23207770 NCBI chr14:20,422,324...20,439,562
Ensembl chr14:20,422,324...20,439,275 		JBrowse link
G Sult2a1 sulfotransferase family 2A member 1 involved_in ISO (PMID:23207770) RGD PMID:23207770 NCBI chr 1:75,451,178...75,508,142
Ensembl chr 1:74,911,100...75,508,134 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852 		JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
glycolate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hao1 hydroxyacid oxidase 1 involved_in ISO (PMID:18215067) RGD PMID:18215067 NCBI chr 3:121,757,400...121,828,721
Ensembl chr 3:121,771,836...121,828,721 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      small molecule metabolic process 1898
        alcohol metabolic process 374
          primary alcohol metabolic process 103
            primary alcohol catabolic process 14
              (+)-lariciresinol catabolic process 0
              aldosterone catabolic process 0
              chrysobactin catabolic process 0
              ethanol catabolic process + 11
              ethanolamine catabolic process 0
              farnesol catabolic process 2
              geraniol catabolic process 0
              glycolate catabolic process 1
              methanol catabolic process 0
              octanol catabolic process 0
              thiamine catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      organic substance metabolic process 11557
        organic substance catabolic process 2276
          organic hydroxy compound catabolic process 59
            alcohol catabolic process 38
              primary alcohol catabolic process 14
                (+)-lariciresinol catabolic process 0
                aldosterone catabolic process 0
                chrysobactin catabolic process 0
                ethanol catabolic process + 11
                ethanolamine catabolic process 0
                farnesol catabolic process 2
                geraniol catabolic process 0
                glycolate catabolic process 1
                methanol catabolic process 0
                octanol catabolic process 0
                thiamine catabolic process 0
paths to the root