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ONTOLOGY REPORT - ANNOTATIONS

Term:primary alcohol biosynthetic process
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Accession:GO:0034309 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.
Synonyms:exact_synonym: monohydric alcohol biosynthetic process;   primary alcohol anabolism;   primary alcohol biosynthesis;   primary alcohol formation;   primary alcohol synthesis


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aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1H calcium voltage-gated channel subunit alpha1 H involved_in IMP (PMID:19342457) UniProt PMID:19342457 NCBI chr16:1,153,106...1,221,768
Ensembl chr16:1,153,103...1,224,169 		JBrowse link
G CYP11B1 cytochrome P450 family 11 subfamily B member 1 involved_in ISO
IBA
IEA
IDA
IMP		 (PMID:2256920)
(PMID:19342457)		 RGD
GO_Central
TreeGrafter
BHF-UCL
UniProt		 PMID:2256920 PMID:11832364 PMID:19342457 GO_REF:0000033 GO_REF:0000118 RGD:727991 NCBI chr 8:142,872,357...142,879,825
Ensembl chr 8:142,872,356...142,879,846 		JBrowse link
G CYP11B2 cytochrome P450 family 11 subfamily B member 2 involved_in
acts_upstream_of_or_within		 IMP
ISO
IEA
IBA
IDA		 (PMID:19342457)
(PMID:1686470), (PMID:8645611)
(PMID:1741400), (PMID:2256920), (PMID:23322723)		 UniProt
MGI
TreeGrafter
GO_Central
BHF-UCL		 PMID:1686470 PMID:1741400 PMID:2256920 PMID:8645611 PMID:19342457 More... GO_REF:0000033 GO_REF:0000118 NCBI chr 8:142,910,559...142,917,843
Ensembl chr 8:142,910,559...142,917,843 		JBrowse link
cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1H calcium voltage-gated channel subunit alpha1 H involved_in IMP (PMID:19342457) UniProt PMID:19342457 NCBI chr16:1,153,106...1,221,768
Ensembl chr16:1,153,103...1,224,169 		JBrowse link
G CYP11B1 cytochrome P450 family 11 subfamily B member 1 involved_in IDA
IMP		 (PMID:8506298)
(PMID:19342457), (PMID:2022736)		 BHF-UCL
UniProt		 PMID:2022736 PMID:8506298 PMID:19342457 NCBI chr 8:142,872,357...142,879,825
Ensembl chr 8:142,872,356...142,879,846 		JBrowse link
G CYP11B2 cytochrome P450 family 11 subfamily B member 2 involved_in
NOT|involved_in		 IMP (PMID:19342457)
(PMID:9703385)		 UniProt
BHF-UCL		 PMID:9703385 PMID:19342457 NCBI chr 8:142,910,559...142,917,843
Ensembl chr 8:142,910,559...142,917,843 		JBrowse link
glycolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase involved_in IEA
IBA
IDA		 (PMID:22523093) Ensembl
TreeGrafter
GO_Central
ParkinsonsUK-UCL		 PMID:22523093 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IDA (PMID:19584291) BHF-UCL PMID:19584291 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246 		JBrowse link
G BMP5 bone morphogenetic protein 5 involved_in IDA (PMID:19584291) BHF-UCL PMID:19584291 NCBI chr 6:55,753,653...55,875,590
Ensembl chr 6:55,753,653...55,875,590 		JBrowse link
G DKK3 dickkopf WNT signaling pathway inhibitor 3 involved_in IDA (PMID:16981135) UniProt PMID:16981135 NCBI chr11:11,963,036...12,009,745
Ensembl chr11:11,956,207...12,009,769 		JBrowse link
G REST RE1 silencing transcription factor involved_in IMP (PMID:19342457) UniProt PMID:19342457 NCBI chr 4:56,907,900...56,935,844
Ensembl chr 4:56,907,876...56,966,808 		JBrowse link
negative regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IDA (PMID:19584291) BHF-UCL PMID:19584291 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246 		JBrowse link
G BMP5 bone morphogenetic protein 5 involved_in IDA (PMID:19584291) BHF-UCL PMID:19584291 NCBI chr 6:55,753,653...55,875,590
Ensembl chr 6:55,753,653...55,875,590 		JBrowse link
G DKK3 dickkopf WNT signaling pathway inhibitor 3 involved_in IDA (PMID:16981135) UniProt PMID:16981135 NCBI chr11:11,963,036...12,009,745
Ensembl chr11:11,956,207...12,009,769 		JBrowse link
G REST RE1 silencing transcription factor involved_in IMP (PMID:19342457) UniProt PMID:19342457 NCBI chr 4:56,907,900...56,935,844
Ensembl chr 4:56,907,876...56,966,808 		JBrowse link
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP6 bone morphogenetic protein 6 involved_in IDA (PMID:16527843) UniProt PMID:16527843 NCBI chr 6:7,726,099...7,881,728
Ensembl chr 6:7,726,099...7,881,728 		JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IEA
ISO		 Ensembl
RGD		 PMID:17303656 GO_REF:0000107 RGD:7243836 NCBI chr 5:39,371,677...39,424,980
Ensembl chr 5:39,371,675...39,462,300 		JBrowse link
G WNT4 Wnt family member 4 involved_in IDA (PMID:16981135) UniProt PMID:16981135 NCBI chr 1:22,117,313...22,143,097
Ensembl chr 1:22,117,313...22,143,969 		JBrowse link
positive regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT4 Wnt family member 4 involved_in IDA (PMID:16981135) UniProt PMID:16981135 NCBI chr 1:22,117,313...22,143,097
Ensembl chr 1:22,117,313...22,143,969 		JBrowse link
regulation of aldosterone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLCN2 chloride voltage-gated channel 2 involved_in IMP (PMID:29403011) UniProt PMID:29403011 NCBI chr 3:184,346,185...184,361,605
Ensembl chr 3:184,346,185...184,361,650 		JBrowse link
regulation of cortisol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGKQ diacylglycerol kinase theta involved_in IMP (PMID:24369117) ParkinsonsUK-UCL PMID:24369117 NCBI chr 4:958,887...973,569
Ensembl chr 4:958,887...986,895 		JBrowse link
G H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase involved_in IMP (PMID:18628520), (PMID:23132696) UniProt PMID:18628520 PMID:23132696 NCBI chr 1:9,234,774...9,271,337
Ensembl chr 1:9,234,774...9,271,337 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    metabolic process 12464
      small molecule metabolic process 2010
        alcohol metabolic process 419
          primary alcohol metabolic process 108
            primary alcohol biosynthetic process 14
              (+)-lariciresinol biosynthetic process 0
              1-butanol biosynthetic process + 0
              aldosterone biosynthetic process + 11
              aromatic primary alcohol biosynthetic process 0
              chrysobactin biosynthetic process 0
              cortisol biosynthetic process + 10
              ethanol biosynthetic process 0
              ethanolamine biosynthetic process 0
              farnesol biosynthetic process 0
              geraniol biosynthetic process 0
              glycolate biosynthetic process + 1
              isobutanol biosynthetic process 0
              kojic acid biosynthetic process + 0
              methanol biosynthetic process 0
              octanol biosynthetic process 0
              phytol biosynthetic process + 0
              thiamine biosynthetic process + 0
              vomitoxin biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19669
    metabolic process 12464
      organic substance metabolic process 11967
        organic substance biosynthetic process 9224
          organic hydroxy compound biosynthetic process 280
            alcohol biosynthetic process 158
              primary alcohol biosynthetic process 14
                (+)-lariciresinol biosynthetic process 0
                1-butanol biosynthetic process + 0
                aldosterone biosynthetic process + 11
                aromatic primary alcohol biosynthetic process 0
                chrysobactin biosynthetic process 0
                cortisol biosynthetic process + 10
                ethanol biosynthetic process 0
                ethanolamine biosynthetic process 0
                farnesol biosynthetic process 0
                geraniol biosynthetic process 0
                glycolate biosynthetic process + 1
                isobutanol biosynthetic process 0
                kojic acid biosynthetic process + 0
                methanol biosynthetic process 0
                octanol biosynthetic process 0
                phytol biosynthetic process + 0
                thiamine biosynthetic process + 0
                vomitoxin biosynthetic process 0
paths to the root