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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of cellular amide metabolic process
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Accession:GO:0034249 term browser browse the term
Definition:Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amides.
Synonyms:exact_synonym: negative regulation of amide metabolism


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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:26489465)
GO_REF:0000024
RGD
UniProt
PMID:26489465 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO
ISS
(PMID:16126846), (PMID:28275056)
GO_REF:0000024
RGD
UniProt
PMID:16126846 PMID:28275056 GO_REF:0000024 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in IBA
ISO
PMID:21873635
(MGI:6105829|PMID:27616329)
(PMID:29180010)
RGD PMID:27616329 PMID:29180010, PMID:21873635 MGI:6105829, RGD:13792537 NCBI chr 5:173,646,055...173,654,140
Ensembl chr 5:173,646,195...173,653,905
JBrowse link
G Qk quaking acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) RGD PMID:20631256 MGI:5316962 NCBI chr 1:50,983,647...51,050,692
Ensembl chr 1:50,828,134...51,052,340
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) RGD PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324), (PMID:26255671) RGD PMID:24726324 PMID:26255671 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5707103|PMID:26134560), (MGI:5751631|PMID:26255671)
PMID:21873635
(PMID:19909337)
UniProt
RGD
PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 PMID:26255671, PMID:21873635 GO_REF:0000024 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5707103 MGI:5751631, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) RGD PMID:26134560 MGI:5707103 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233), (MGI:5795824|PMID:17288565)
(PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 PMID:15687258 PMID:15766526 PMID:17288565 PMID:20221403 PMID:22701344 PMID:27193233 GO_REF:0000024 GO_REF:0000107 MGI:5784976 MGI:5788345 MGI:5795824 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4818820|PMID:20622884), (MGI:5779430|PMID:27102483), (MGI:5784967|PMID:24733888), (MGI:5784968|PMID:24700863), (MGI:5784976|PMID:22701344)
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
UniProt
RGD
PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 PMID:19179481 PMID:20622884 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 PMID:27102483 GO_REF:0000024 MGI:4818820 MGI:5779430 MGI:5784967 MGI:5784968 MGI:5784976 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
RGD PMID:20622884 PMID:22701344 PMID:25106868 MGI:4818820 MGI:5784976 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07066144.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:3,921,406...3,965,939 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 acts_upstream_of_or_within ISO MGI:109382 (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,249,654...151,287,018
Ensembl chr 4:151,250,041...151,285,702
JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 8:36,321,992...36,374,665
Ensembl chr 8:36,321,993...36,374,673
JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:3,940,948...3,965,964
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G LOC103690064 m7GpppN-mRNA hydrolase-like involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:35,849,655...35,883,568
Ensembl chr18:35,850,132...35,876,585
Ensembl chr18:35,850,132...35,876,585
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
IBA
ISS
(PMID:20584987), (PMID:20852261)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20584987 PMID:20852261, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:228,337,756...228,369,719
Ensembl chr 1:228,337,767...228,369,761
JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:114,065,814...114,075,404
Ensembl chr 3:114,066,840...114,074,803
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
ISS
IEA
(PMID:20065043)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:20065043 GO_REF:0000024 GO_REF:0000107 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO
IBA
(PMID:20065043), (PMID:21336257)
PMID:21873635
RGD PMID:20065043 PMID:21336257, PMID:21873635 RGD:13792537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in ISO
IBA
(PMID:20065043)
PMID:21873635
RGD PMID:20065043, PMID:21873635 RGD:13792537 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 involved_in ISO
IBA
(PMID:11782436)
PMID:21873635
RGD PMID:11782436, PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA
(PMID:11782436)
PMID:21873635
RGD PMID:11782436, PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISS
ISO
GO_REF:0000104
GO_REF:0000024
(PMID:17671087), (PMID:18771919), (PMID:19801630)
UniProt
RGD
PMID:17671087 PMID:18771919 PMID:19801630 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISO
IEA
ISS
(PMID:17507929)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17507929 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO (MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:5465045 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir143 microRNA 143 acts_upstream_of_or_within ISO (MGI:5289772|PMID:21441927) RGD PMID:21441927 MGI:5289772 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Mir186 microRNA 186 acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 2:263,873,759...263,873,844
Ensembl chr 2:263,873,759...263,873,844
JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7g microRNA let-7g acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 8:114,874,457...114,874,544
Ensembl chr 8:114,874,454...114,874,550
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in ISO (PMID:17671087) RGD PMID:17671087 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISS
ISO
GO_REF:0000024
(MGI:5448492|PMID:22735451)
UniProt
RGD
PMID:22735451 GO_REF:0000024 MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Zfp36 zinc finger protein 36 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5487524|PMID:21278420)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21278420 GO_REF:0000024 GO_REF:0000107 MGI:5487524 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in IDA PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) RGD PMID:17452450 MGI:3828348 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO
ISS
(PMID:28002401), (PMID:30197295)
GO_REF:0000024
RGD
UniProt
PMID:28002401 PMID:30197295 GO_REF:0000024 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R IMP RGD PMID:15798208 RGD:9854643 NCBI chr 5:154,668,194...154,699,967
Ensembl chr 5:154,668,179...154,699,966
JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759) RGD PMID:24394384 PMID:28965759 MGI:5559905 MGI:5927282 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) RGD PMID:29262316 MGI:6114846 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) RGD PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 PMID:28965759 MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (MGI:5640888|PMID:25768905) RGD PMID:25768905 MGI:5640888 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO
ISS
(PMID:30930054)
GO_REF:0000024
RGD
UniProt
PMID:30930054 GO_REF:0000024 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6271078|PMID:29353861)
Ensembl
RGD
PMID:29353861 GO_REF:0000107 MGI:6271078 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) RGD PMID:29353861 MGI:6271078 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 involved_in ISO
IBA
(PMID:32492408)
(MGI:6490006|PMID:32943573)
PMID:21873635
RGD PMID:32492408 PMID:32943573, PMID:21873635 MGI:6490006, RGD:13792537 NCBI chr 3:176,415,911...176,431,423
Ensembl chr 3:176,415,914...176,431,423
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 involved_in ISO
IBA
(PMID:27558897), (PMID:28106072), (PMID:30559377), (PMID:30930054), (PMID:32169943), (PMID:32492408)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673), (MGI:6490006|PMID:32943573), (MGI:6508516|PMID:31959747)
PMID:21873635
RGD PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 PMID:31959747 PMID:32169943 PMID:32492408 PMID:32943573, PMID:21873635 MGI:6316439 MGI:6316688 MGI:6317061 MGI:6490006 MGI:6508516, RGD:13792537 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 involved_in ISO
IBA
(PMID:28106072), (PMID:32492408)
(MGI:6490006|PMID:32943573)
PMID:21873635
RGD PMID:28106072 PMID:32492408 PMID:32943573, PMID:21873635 MGI:6490006, RGD:13792537 NCBI chr 2:100,677,388...100,711,365
Ensembl chr 2:100,677,411...100,710,417
JBrowse link
negative regulation of amyloid-beta formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5487687|PMID:23467355), (MGI:5553242|PMID:18429932), (MGI:5774886|PMID:27030769)
Alzheimers_University_of_Toronto
RGD
PMID:18429932 PMID:23467355 PMID:27030769 GO_REF:0000024 MGI:5487687 MGI:5553242 MGI:5774886 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Apoe apolipoprotein E involved_in ISO
IEA
(PMID:24259049)
GO_REF:0000107
(PMID:24154541)
RGD
Ensembl
PMID:24154541 PMID:24259049 GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Bin1 bridging integrator 1 involved_in ISO
IEA
(PMID:27179792)
(MGI:5811968|PMID:27179792)
GO_REF:0000107
RGD
Ensembl
PMID:27179792 GO_REF:0000107 MGI:5811968 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit involved_in ISO UniProtKB:P05067 (PMID:20708605) RGD PMID:20708605 NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
JBrowse link
G Clu clusterin involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12047389), (PMID:17412999)
Alzheimers_University_of_Toronto
Ensembl
RGD
PMID:12047389 PMID:17412999 GO_REF:0000024 GO_REF:0000107 NCBI chr15:42,626,612...42,665,858
Ensembl chr15:42,640,146...42,665,857
JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in ISO (PMID:17553422) RGD PMID:17553422 NCBI chr10:104,137,655...104,156,576
Ensembl chr10:104,137,655...104,156,576
JBrowse link
G Hap1 huntingtin-associated protein 1 involved_in IMP PMID:22731248 UniProt PMID:22731248 RGD:10047200 NCBI chr10:88,257,975...88,266,210
Ensembl chr10:88,257,976...88,266,210
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in IEA
ISO
GO_REF:0000107
RNAcentral:URS000034B6F5_9606 (PMID:27277332)
Ensembl
RGD
PMID:27277332 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
UniProtKB:P05067-4 (PMID:26094765)
Ensembl
RGD
PMID:26094765 GO_REF:0000107 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Olfm1 olfactomedin 1 acts_upstream_of_or_within ISO (MGI:5444053|PMID:22992957) RGD PMID:22992957 MGI:5444053 NCBI chr 3:6,761,031...6,798,739
Ensembl chr 3:6,773,813...6,798,737
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 involved_in ISO (PMID:25576397)
(MGI:3620333|PMID:16554819)
RGD PMID:16554819 PMID:25576397 MGI:3620333 NCBI chr 8:21,669,236...21,680,615
Ensembl chr 8:21,669,236...21,680,615
JBrowse link
G Prnp prion protein involved_in ISO UniProtKB:P12023 (MGI:3714552|PMID:17573534) RGD PMID:17573534 MGI:3714552 NCBI chr 3:124,515,917...124,531,320
Ensembl chr 3:124,515,978...124,531,316
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IEA
(PMID:24305806), (PMID:27853422)
GO_REF:0000107
RGD
Ensembl
PMID:24305806 PMID:27853422 GO_REF:0000107 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rtn1 reticulon 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15286784)
UniProt
Ensembl
RGD
PMID:15286784 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:94,951,016...95,177,477
Ensembl chr 6:94,951,020...95,061,174
JBrowse link
G Rtn2 reticulon 2 involved_in ISO
ISS
(PMID:15286784)
GO_REF:0000024
RGD
UniProt
PMID:15286784 GO_REF:0000024 NCBI chr 1:80,195,594...80,208,449
Ensembl chr 1:80,195,532...80,208,448
JBrowse link
G Rtn3 reticulon 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:15286784)
UniProt
RGD
PMID:15286784 GO_REF:0000024 NCBI chr 1:222,677,359...222,734,307
Ensembl chr 1:222,677,365...222,734,241
JBrowse link
G Rtn4 reticulon 4 involved_in ISO
IEA
ISS
(PMID:15286784)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15286784 GO_REF:0000024 GO_REF:0000107 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:16407538), (PMID:17855360), (PMID:21989385), (PMID:22621900), (PMID:24001769), (PMID:24523320)
(MGI:3801250|PMID:18362153), (MGI:3821635|PMID:19036982)
RGD PMID:16407538 PMID:17855360 PMID:18362153 PMID:19036982 PMID:21989385 PMID:22621900 PMID:24001769 PMID:24523320 MGI:3801250 MGI:3821635 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Spon1 spondin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3607023|PMID:16227578)
Ensembl
RGD
PMID:16227578 GO_REF:0000107 MGI:3607023 NCBI chr 1:178,568,777...178,935,715
Ensembl chr 1:178,636,544...178,935,051
JBrowse link
negative regulation of ceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 involved_in IBA
ISO
PMID:21873635
(PMID:25691431)
RGD PMID:25691431, PMID:21873635 RGD:13792537 NCBI chr 9:53,110,628...53,120,454
Ensembl chr 9:53,111,371...53,118,613
JBrowse link
G Ormdl2 ORMDL sphingolipid biosynthesis regulator 2 involved_in ISO
IBA
(PMID:25691431)
PMID:21873635
RGD PMID:25691431, PMID:21873635 RGD:13792537 NCBI chr 7:3,242,991...3,246,085
Ensembl chr 7:3,242,991...3,246,071
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(MGI:5638294|PMID:25691431)
PMID:21873635
(PMID:25691431)
Ensembl
RGD
PMID:25691431, PMID:21873635 GO_REF:0000107 MGI:5638294, RGD:13792537 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478
JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6294167|PMID:16118219)
(PMID:16118219)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16118219 GO_REF:0000024 GO_REF:0000107 MGI:6294167 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
negative regulation of cytoplasmic translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO
ISS
IBA
(PMID:18752464)
(MGI:5543770|PMID:18752464)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:18752464, PMID:21873635 GO_REF:0000024 MGI:5543770, RGD:13792537 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5543770|PMID:18752464)
PMID:21873635
(PMID:18752464)
UniProt
RGD
PMID:18752464, PMID:21873635 GO_REF:0000024 MGI:5543770, RGD:13792537 NCBI chr14:72,327,929...72,382,519
Ensembl chr14:72,331,705...72,380,330
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Cpeb4 cytoplasmic polyadenylation element binding protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,984,520...16,047,209
Ensembl chr10:15,987,921...16,046,033
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5767073|PMID:11376146)
UniProt
RGD
PMID:11376146 GO_REF:0000024 MGI:5767073 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29358667) RGD PMID:29358667 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Unk unk zinc finger involved_in ISO (PMID:25737280) RGD PMID:25737280 NCBI chr10:104,582,531...104,613,102
Ensembl chr10:104,582,955...104,612,033
JBrowse link
negative regulation of cytoplasmic translational elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5314154|PMID:22157746) RGD PMID:22157746 MGI:5314154 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl13a ribosomal protein L13A involved_in ISO
ISS
(PMID:17218275)
GO_REF:0000024
RGD
UniProt
PMID:17218275 GO_REF:0000024 NCBI chr 1:101,120,325...101,123,401
Ensembl chr 1:101,120,325...101,123,402
JBrowse link
negative regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in ISO (PMID:22829778) RGD PMID:22829778 NCBI chr 4:78,735,279...78,744,102
Ensembl chr 4:78,735,279...78,744,102
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:36,400,056...36,433,238
Ensembl chr 1:36,400,443...36,433,238
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISO
IEA
ISS
(PMID:18377426)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18377426 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
negative regulation of selenocysteine incorporation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4a3 eukaryotic translation initiation factor 4A3 IDA RGD PMID:21685449, PMID:19716792 RGD:10044260, RGD:10045552 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
negative regulation of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC099450.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:101,120,711...101,131,193 JBrowse link
G AC112866.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:193,700,302...193,700,673 JBrowse link
G Btg2 BTG anti-proliferation factor 2 involved_in ISO
ISS
(PMID:23236473)
GO_REF:0000024
RGD
UniProt
PMID:23236473 GO_REF:0000024 NCBI chr13:50,913,185...50,916,944
Ensembl chr13:50,913,180...50,916,982
JBrowse link
G Calr calreticulin involved_in ISO (PMID:14726956) RGD PMID:14726956 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in IDA
IEA
PMID:20516077
GO_REF:0000043
UniProt PMID:20516077 GO_REF:0000043, RGD:8554681 NCBI chr 3:93,701,830...93,789,580
Ensembl chr 3:93,702,487...93,789,617
JBrowse link
G Caprin2 caprin family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:183,304,993...183,374,195
Ensembl chr 4:183,305,813...183,374,195
JBrowse link
G Celf1 CUGBP, Elav-like family member 1 acts_upstream_of_or_within ISO (MGI:6405956|PMID:32245946) RGD PMID:32245946 MGI:6405956 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Cirbp cold inducible RNA binding protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO
IBA
(PMID:24736845)
PMID:21873635
RGD PMID:24736845, PMID:21873635 RGD:13792537 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,634,681...122,696,466
Ensembl chr 8:122,634,685...122,679,720
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:81,783,349...81,808,815
Ensembl chr 9:81,783,349...81,808,805
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 IMP RGD PMID:23360795 RGD:9685152 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in
acts_upstream_of_or_within
ISO (PMID:21336257), (PMID:22711986)
(MGI:3703111|PMID:17024188)
(MGI:3703111|PMID:17024188), (MGI:5795795|PMID:26074071)
RGD PMID:17024188 PMID:21336257 PMID:22711986 PMID:26074071 MGI:3703111 MGI:5795795 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Dapk1 death associated protein kinase 1 involved_in ISO (PMID:18995835) RGD PMID:18995835 NCBI chr17:4,297,038...4,454,941
Ensembl chr17:4,297,224...4,454,778
JBrowse link
G Dapk3 death-associated protein kinase 3 involved_in ISO (PMID:18995835) RGD PMID:18995835 NCBI chr 7:11,392,436...11,400,855
Ensembl chr 7:11,392,437...11,400,805
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:17667941) RGD PMID:17667941 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in ISO (PMID:27342281) RGD PMID:27342281 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Dhfr dihydrofolate reductase involved_in ISO (PMID:8490020) RGD PMID:8490020 NCBI chr 2:21,931,887...21,958,927
Ensembl chr 2:21,931,493...21,962,453
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:24369427)
GO_REF:0000024
RGD
UniProt
PMID:24369427 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:12,749,026...12,782,078
Ensembl chr12:12,748,785...12,782,146
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 involved_in ISO
ISS
(PMID:12610133), (PMID:12882984), (PMID:19189853)
GO_REF:0000024
RGD
UniProt
PMID:12610133 PMID:12882984 PMID:19189853 GO_REF:0000024 NCBI chr 6:1,428,845...1,466,193
Ensembl chr 6:1,428,834...1,466,201
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in
acts_upstream_of_or_within
ISO (MGI:5514336|PMID:12610133)
MGI:1353427|MGI:2177666 (MGI:1333015|PMID:9930704), (MGI:1858648|PMID:10882126), (MGI:3620306|PMID:16176978)
RGD PMID:9930704 PMID:10882126 PMID:12610133 PMID:16176978 MGI:1333015 MGI:1858648 MGI:3620306 MGI:5514336 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 acts_upstream_of_or_within ISO MGI:1341830 (MGI:3620306|PMID:16176978) RGD PMID:16176978 MGI:3620306 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:10523622) RGD PMID:10523622 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E acts_upstream_of_or_within ISO (MGI:5614138|PMID:25456498) RGD PMID:25456498 MGI:5614138 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 involved_in ISO (PMID:22751931) RGD PMID:22751931 NCBI chr 9:94,310,476...94,325,445
Ensembl chr 9:94,307,852...94,336,831
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16157702), (PMID:24335285), (PMID:27342281)
(MGI:5614138|PMID:25456498)
PMID:21873635
RGD PMID:16157702 PMID:24335285 PMID:25456498 PMID:27342281, PMID:21873635 MGI:5614138, RGD:13792537 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Enc1 ectodermal-neural cortex 1 involved_in ISO (PMID:19424503) RGD PMID:19424503 NCBI chr 2:28,049,217...28,061,023
Ensembl chr 2:28,049,217...28,061,029
JBrowse link
G Eprs glutamyl-prolyl-tRNA synthetase involved_in ISO (PMID:15479637), (PMID:23071094)
(MGI:5466658|PMID:23071094)
RGD PMID:15479637 PMID:23071094 MGI:5466658 NCBI chr13:103,300,911...103,371,651
Ensembl chr13:103,300,932...103,371,577
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in IBA
ISO
ISS
IEA
PMID:21873635
(MGI:2684495|PMID:14613971), (MGI:5904573|PMID:27666021)
GO_REF:0000024
GO_REF:0000108
RGD
UniProt
GOC
PMID:14613971 PMID:27666021, PMID:21873635 GO_REF:0000024 GO_REF:0000108 MGI:2684495 MGI:5904573, RGD:13792537 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3573966|PMID:15548538)
RGD PMID:15548538, PMID:21873635 MGI:3573966, RGD:13792537 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,237,814...56,257,877
Ensembl chr10:56,237,755...56,257,890
JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase involved_in ISO (PMID:15479637), (PMID:23071094)
(MGI:5466658|PMID:23071094)
RGD PMID:15479637 PMID:23071094 MGI:5466658 NCBI chr 4:157,676,336...157,680,322
Ensembl chr 4:157,676,595...157,679,962
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:22751931) RGD PMID:22751931 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Grb7 growth factor receptor bound protein 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284766|PMID:18273060)
UniProt
RGD
PMID:18273060 GO_REF:0000024 MGI:5284766 NCBI chr10:86,393,186...86,408,893
Ensembl chr10:86,399,827...86,409,348
JBrowse link
G Gzmb granzyme B involved_in ISO (PMID:29107333) RGD PMID:29107333 NCBI chr15:35,413,862...35,417,293
Ensembl chr15:35,413,793...35,417,316
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:9891060) RGD PMID:9891060 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 involved_in ISO (PMID:15700281) RGD PMID:15700281 NCBI chr 9:80,154,230...80,166,813
Ensembl chr 9:80,150,211...80,167,033
JBrowse link
G Ilf3 interleukin enhancer binding factor 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4867319|PMID:21123651)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21123651 GO_REF:0000024 GO_REF:0000107 MGI:4867319 NCBI chr 8:22,402,877...22,440,984
Ensembl chr 8:22,402,890...22,440,885
JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E IDA RGD PMID:21436142 RGD:12911213 NCBI chr 3:3,843,307...3,856,154
Ensembl chr 3:3,843,307...3,855,981
JBrowse link
G Ireb2 iron responsive element binding protein 2 involved_in IDA
IEA
GO_REF:0000002 InterPro PMID:7523370 GO_REF:0000002, RGD:12910701 NCBI chr 8:59,450,974...59,503,634
Ensembl chr 8:59,420,123...59,501,118
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:25940091) RGD PMID:25940091 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:5795814|PMID:23102813) RGD PMID:23102813 MGI:5795814 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in ISO (PMID:29510985) RGD PMID:29510985 NCBI chr 1:90,200,866...90,246,292
Ensembl chr 1:90,200,876...90,246,297
JBrowse link
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:78,735,279...78,744,102
Ensembl chr 4:78,735,279...78,744,102
JBrowse link
G Mir1b microRNA 1b acts_upstream_of_or_within ISO (MGI:3842072|PMID:19188439) RGD PMID:19188439 MGI:3842072 NCBI chr 3:175,769,716...175,769,800
Ensembl chr 3:175,769,716...175,769,800
JBrowse link
G Mir448 microRNA 448 acts_upstream_of_or_within ISO (MGI:5316944|PMID:20719859) RGD PMID:20719859 MGI:5316944 NCBI chr  X:118,277,684...118,277,795
Ensembl chr  X:118,277,684...118,277,795
JBrowse link
G Mir7b microRNA 7b acts_upstream_of_or_within ISO (MGI:3691268|PMID:17028171) RGD PMID:17028171 MGI:3691268 NCBI chr 9:10,812,432...10,812,541
Ensembl chr 9:10,812,432...10,812,541
JBrowse link
G Mrpl13 mitochondrial ribosomal protein L13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:95,288,400...95,309,997
Ensembl chr 7:95,288,376...95,310,005
JBrowse link
G Mvk mevalonate kinase IDA RGD PMID:16263716 RGD:1600527 NCBI chr12:47,904,266...47,920,457
Ensembl chr12:47,904,719...47,919,400
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 involved_in IBA
ISO
PMID:21873635
(PMID:24736845)
RGD PMID:24736845, PMID:21873635 RGD:13792537 NCBI chr 1:282,134,676...282,140,370
Ensembl chr 1:282,134,981...282,135,772
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in IBA
ISO
PMID:21873635
(PMID:24736845)
RGD PMID:24736845, PMID:21873635 RGD:13792537 NCBI chr 1:79,894,450...79,895,910
Ensembl chr 1:79,894,450...79,895,910
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in IBA
ISO
PMID:21873635
(PMID:24736845)
RGD PMID:24736845, PMID:21873635 RGD:13792537 NCBI chr19:25,284,907...25,288,680
Ensembl chr19:25,284,909...25,288,335
JBrowse link
G Ncl nucleolin involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Otud6b OTU deubiquitinase 6B involved_in ISO (PMID:27864334) RGD PMID:27864334 NCBI chr 5:28,333,019...28,350,093
Ensembl chr 5:28,333,019...28,349,927
JBrowse link
G Paip2 poly(A) binding protein interacting protein 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5494875|PMID:23622065)
RGD PMID:23622065, PMID:21873635 MGI:5494875, RGD:13792537 NCBI chr18:28,397,320...28,415,911
Ensembl chr18:28,409,955...28,415,910
JBrowse link
G Paip2b poly(A) binding protein interacting protein 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,484,676...115,516,307
Ensembl chr 4:115,487,313...115,516,296
JBrowse link
G Pcif1 phosphorylated CTD interacting factor 1 involved_in ISO (PMID:31279659) RGD PMID:31279659 NCBI chr 3:161,343,883...161,356,815
Ensembl chr 3:161,343,883...161,356,815
JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 involved_in ISO (PMID:10318872) RGD PMID:10318872 NCBI chr 3:72,395,194...72,401,254
Ensembl chr 3:72,395,218...72,401,318
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in NAS PMID:12194824 UniProt PMID:12194824 RGD:8553742 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Prkca protein kinase C, alpha IMP RGD PMID:16556598 RGD:1582336 NCBI chr10:96,186,509...96,585,168
Ensembl chr10:96,191,133...96,584,947
JBrowse link
G Ptgfrn prostaglandin F2 receptor inhibitor involved_in NAS PMID:8804121 UniProt PMID:8804121 RGD:729735 NCBI chr 2:203,423,143...203,494,391
Ensembl chr 2:203,423,143...203,494,391
JBrowse link
G Pura purine rich element binding protein A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:29,104,712...29,114,918
Ensembl chr18:29,110,242...29,111,156
JBrowse link
G Purb purine rich element binding protein B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:86,736,876...86,739,335
Ensembl chr14:86,736,878...86,739,335
JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:7,889,727...7,931,357
Ensembl chr 4:7,889,869...7,930,706
JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IMP PMID:15340087 UniProt PMID:15340087 RGD:8553695 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Rara retinoic acid receptor, alpha IDA RGD PMID:19073915 RGD:2314253 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:17284590) RGD PMID:17284590 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rgs2 regulator of G-protein signaling 2 IMP RGD PMID:24576550 RGD:13524571 NCBI chr13:60,846,458...60,849,061
Ensembl chr13:60,846,308...60,849,094
JBrowse link
G Rida reactive intermediate imine deaminase A homolog IDA RGD PMID:10400702 RGD:9685547 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Rnf139 ring finger protein 139 involved_in ISO (PMID:20068067) RGD PMID:20068067 NCBI chr 7:98,770,840...98,782,025
Ensembl chr 7:98,770,840...98,782,025
JBrowse link
G Rpl13a ribosomal protein L13A involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5466658|PMID:23071094)
GO_REF:0000024
(PMID:14567916), (PMID:15479637), (PMID:23071094)
RGD
UniProt
PMID:14567916 PMID:15479637 PMID:23071094, PMID:21873635 GO_REF:0000024 MGI:5466658, RGD:13792537 NCBI chr 1:101,120,325...101,123,401
Ensembl chr 1:101,120,325...101,123,402
JBrowse link
G Rps3 ribosomal protein S3 involved_in ISO (PMID:20217897) RGD PMID:20217897 NCBI chr 1:164,435,868...164,441,167
Ensembl chr 1:164,435,878...164,441,167
JBrowse link
G Samd4a sterile alpha motif domain containing 4A involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr15:23,666,543...23,879,067
Ensembl chr15:23,665,202...23,878,539
JBrowse link
G Samd4b sterile alpha motif domain containing 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,324,017...85,362,266
Ensembl chr 1:85,324,043...85,362,241
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:10995219) RGD PMID:10995219 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IEA
ISO
GO_REF:0000107
(PMID:15479637), (PMID:23071094)
Ensembl
RGD
PMID:15479637 PMID:23071094 GO_REF:0000107 NCBI chr 8:96,100,692...96,266,342
Ensembl chr 8:96,105,025...96,266,342
JBrowse link
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein acts_upstream_of_or_within ISO MGI:3037091 (MGI:3037090|PMID:10921895) RGD PMID:10921895 MGI:3037090 NCBI chr 4:118,207,845...118,238,246
Ensembl chr 4:118,207,862...118,235,218
JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23236473)
Ensembl
UniProt
RGD
PMID:23236473 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO
IBA
(PMID:23125361)
PMID:21873635
RGD PMID:23125361, PMID:21873635 RGD:13792537 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO (PMID:17308101) RGD PMID:17308101 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145
JBrowse link
G Tyms thymidylate synthetase involved_in ISO (PMID:1924359) RGD PMID:1924359 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:7588596)
UniProt
RGD
PMID:7588596 GO_REF:0000024 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 IMP RGD PMID:25797256 RGD:11085566 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Ybx2 Y box binding protein 2 acts_upstream_of_or_within ISO (MGI:3529406|PMID:15665108) RGD PMID:15665108 MGI:3529406 NCBI chr10:56,546,689...56,552,339
Ensembl chr10:56,546,710...56,551,863
JBrowse link
negative regulation of translation in response to endoplasmic reticulum stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (MGI:1333015|PMID:9930704) RGD PMID:9930704 MGI:1333015 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Sesn2 sestrin 2 involved_in ISO (PMID:24947615)
(MGI:5688277|PMID:24947615)
RGD PMID:24947615 MGI:5688277 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117
JBrowse link
negative regulation of translation in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pml PML nuclear body scaffold involved_in ISO (PMID:16915281) RGD PMID:16915281 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
negative regulation of translation in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 IDA RGD PMID:9819435 RGD:70729 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:17284590) RGD PMID:17284590 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
negative regulation of translational elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 acts_upstream_of_or_within ISO MGI:95288 (MGI:5314154|PMID:22157746) RGD PMID:22157746 MGI:5314154 NCBI chr14:72,327,929...72,382,519
Ensembl chr14:72,331,705...72,380,330
JBrowse link
G Srp9 signal recognition particle 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:100,551,307...100,559,447
Ensembl chr13:100,551,307...100,559,447
JBrowse link
negative regulation of translational frameshifting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:30682371)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:30682371 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
negative regulation of translational initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC112866.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:193,700,302...193,700,673 JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:17524464), (PMID:19801630)
GO_REF:0000104
UniProt
RGD
PMID:17524464 PMID:19801630 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Bank1 B-cell scaffold protein with ankyrin repeats 1 acts_upstream_of_or_within ISO MGI:3686872 (MGI:5554491|PMID:24227780) RGD PMID:24227780 MGI:5554491 NCBI chr 2:241,273,763...241,545,527
Ensembl chr 2:241,273,763...241,545,250
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5700304|PMID:16601681)
UniProt
RGD
PMID:16601681 GO_REF:0000024 MGI:5700304 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Eif4ebp1 eukaryotic translation initiation factor 4E binding protein 1 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:3604839|PMID:16142217)
PMID:21873635
(PMID:22578813)
RGD PMID:16142217 PMID:22578813, PMID:11865047, PMID:21873635 MGI:3604839, RGD:1625627, RGD:13792537 NCBI chr16:68,954,860...68,968,248
Ensembl chr16:68,954,875...68,968,248
JBrowse link
G Eif4ebp2 eukaryotic translation initiation factor 4E binding protein 2 involved_in IBA
ISO
PMID:21873635
(MGI:3607012|PMID:16237163), (MGI:4820682|PMID:20347422), (MGI:5471212|PMID:23172145)
RGD PMID:16237163 PMID:20347422 PMID:23172145, PMID:21873635 MGI:3607012 MGI:4820682 MGI:5471212, RGD:13792537 NCBI chr20:31,055,292...31,072,469
Ensembl chr20:31,055,789...31,072,469
JBrowse link
G Eif4ebp3 eukaryotic translation initiation factor 4E binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:29,490,981...29,492,727
Ensembl chr18:29,386,809...29,492,718
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4418608|PMID:18805096)
UniProt
RGD
PMID:18805096 GO_REF:0000024 MGI:4418608 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:28379136) RGD PMID:28379136 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G LOC100912373 uncharacterized LOC100912373 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:28,480,029...28,505,430
Ensembl chr 5:28,480,023...28,505,432
JBrowse link
G Paip2 poly(A) binding protein interacting protein 2 involved_in ISO (PMID:11172725) RGD PMID:11172725 NCBI chr18:28,397,320...28,415,911
Ensembl chr18:28,409,955...28,415,910
JBrowse link
G Paip2b poly(A) binding protein interacting protein 2B involved_in ISO (PMID:16804161) RGD PMID:16804161 NCBI chr 4:115,484,676...115,516,307
Ensembl chr 4:115,487,313...115,516,296
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (MGI:3803427|PMID:18495661) RGD PMID:18495661 MGI:3803427 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISS
ISO
GO_REF:0000024
(PMID:21613532)
UniProt
RGD
PMID:21613532 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
negative regulation of translational initiation in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (MGI:5700311|PMID:12176355) RGD PMID:12176355 MGI:5700311 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:5700311|PMID:12176355)
UniProt
RGD
PMID:12176355 GO_REF:0000024 MGI:5700311 NCBI chr 6:102,048,372...102,073,041
Ensembl chr 6:102,048,372...102,073,041
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) RGD PMID:16934922 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) RGD PMID:17452450 MGI:3828348 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO
IEA
IBA
(PMID:21245038)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:21245038, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) RGD PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,621,976...21,676,789
Ensembl chr 3:21,623,041...21,670,014
JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
RGD PMID:15814898 PMID:23644599 MGI:3589099 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) RGD PMID:15814898 MGI:3589099 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) RGD PMID:15814898 MGI:3589099 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in IBA
ISS
IEA
ISO
PMID:21873635
GO_REF:0000024
GO_REF:0000107
(PMID:20595389)
UniProt
Ensembl
RGD
PMID:20595389, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857946 (MGI:1934053|PMID:11337385)
Ensembl
RGD
PMID:11337385 GO_REF:0000107 MGI:1934053 NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:2,717,021...2,736,541
Ensembl chr 7:2,718,700...2,736,157
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Parn poly(A)-specific ribonuclease involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3785219|PMID:18337750)
RGD PMID:18337750, PMID:21873635 MGI:3785219, RGD:13792537 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 involved_in IBA
ISO
PMID:21873635
(MGI:5825409|PMID:27515512)
(PMID:27515512)
RGD PMID:27515512, PMID:21873635 MGI:5825409, RGD:13792537 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Samd4a sterile alpha motif domain containing 4A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:23,666,543...23,879,067
Ensembl chr15:23,665,202...23,878,539
JBrowse link
G Samd4b sterile alpha motif domain containing 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,324,017...85,362,266
Ensembl chr 1:85,324,043...85,362,241
JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3589099|PMID:15814898)
(PMID:23644599)
Ensembl
RGD
PMID:15814898 PMID:23644599 GO_REF:0000107 MGI:3589099 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) RGD PMID:28792939 MGI:6162305 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) RGD PMID:28792939 MGI:6162305 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
positive regulation of miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
(PMID:23409027)
GO_REF:0000107
RGD
Ensembl
PMID:23409027 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in ISO (PMID:27342281) RGD PMID:27342281 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 involved_in ISO (PMID:28487484) RGD PMID:28487484 NCBI chr 9:94,310,476...94,325,445
Ensembl chr 9:94,307,852...94,336,831
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:24335285), (PMID:27342281), (PMID:28487484), (PMID:32354837) RGD PMID:24335285 PMID:27342281 PMID:28487484 PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 involved_in ISO (PMID:23409027) RGD PMID:23409027 NCBI chr11:83,907,659...83,927,683
Ensembl chr11:83,908,109...83,926,524
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5486537|PMID:19716330)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19716330 GO_REF:0000024 GO_REF:0000107 MGI:5486537 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:21278420) RGD PMID:21278420 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
RGD PMID:19716330 PMID:21278420 MGI:5486537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) RGD PMID:14731398 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:282,134,676...282,140,370
Ensembl chr 1:282,134,981...282,135,772
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:79,894,450...79,895,910
Ensembl chr 1:79,894,450...79,895,910
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr19:25,284,907...25,288,680
Ensembl chr19:25,284,909...25,288,335
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5486537|PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 MGI:5486537 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) RGD PMID:19716330 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) RGD PMID:21984185 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21336257)
UniProt
Ensembl
RGD
PMID:21336257 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5487524|PMID:21278420)
GO_REF:0000107
(PMID:12748283)
UniProt
RGD
Ensembl
PMID:12748283 PMID:21278420 GO_REF:0000024 GO_REF:0000107 MGI:5487524 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IDA PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (MGI:5320815|PMID:22367205) RGD PMID:22367205 MGI:5320815 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5486537|PMID:19716330)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19716330 GO_REF:0000024 GO_REF:0000107 MGI:5486537 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Btg2 BTG anti-proliferation factor 2 involved_in ISO (PMID:18337750) RGD PMID:18337750 NCBI chr13:50,913,185...50,916,944
Ensembl chr13:50,913,180...50,916,982
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:21278420), (PMID:23644599) RGD PMID:21278420 PMID:23644599 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
RGD PMID:19716330 PMID:21278420 MGI:5486537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5486537|PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 MGI:5486537 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:224,991,250...224,998,355
Ensembl chr 1:224,991,222...224,994,653
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO
IBA
(PMID:19716330)
PMID:21873635
RGD PMID:19716330, PMID:21873635 RGD:13792537 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO
IBA
(PMID:21984185)
PMID:21873635
RGD PMID:21984185, PMID:21873635 RGD:13792537 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISO
IEA
ISS
(PMID:21336257)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21336257 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5487524|PMID:21278420), (MGI:5795819|PMID:20595389)
GO_REF:0000107
(PMID:10330172)
UniProt
RGD
Ensembl
PMID:10330172 PMID:20595389 PMID:21278420 GO_REF:0000024 GO_REF:0000107 MGI:5487524 MGI:5795819 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    cellular process 18481
      cellular metabolic process 10866
        negative regulation of cellular metabolic process 2711
          negative regulation of cellular amide metabolic process 204
            negative regulation of amyloid-beta formation 19
            negative regulation of antimicrobial peptide biosynthetic process + 0
            negative regulation of brevianamide F biosynthetic process 0
            negative regulation of butyryl-CoA biosynthetic process from acetyl-CoA 0
            negative regulation of butyryl-CoA catabolic process to butanol 0
            negative regulation of butyryl-CoA catabolic process to butyrate 0
            negative regulation of cellular amide catabolic process + 0
            negative regulation of ceramide biosynthetic process + 4
            negative regulation of emericellamide biosynthetic process + 0
            negative regulation of gliotoxin biosynthetic process 0
            negative regulation of glutathione biosynthetic process 0
            negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 0
            negative regulation of penicillin metabolic process + 0
            negative regulation of peptide hormone processing 0
            negative regulation of pseurotin A biosynthetic process 0
            negative regulation of siderophore biosynthetic process + 0
            negative regulation of tensidol A biosynthetic process 0
            negative regulation of tensidol B biosynthetic process 0
            negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA 0
            negative regulation of translation + 182
Path 2
Term Annotations click to browse term
  biological_process 19634
    biological regulation 13612
      regulation of biological process 12859
        regulation of cellular process 12359
          regulation of cellular metabolic process 6038
            regulation of cellular amide metabolic process 462
              negative regulation of cellular amide metabolic process 204
                negative regulation of amyloid-beta formation 19
                negative regulation of antimicrobial peptide biosynthetic process + 0
                negative regulation of brevianamide F biosynthetic process 0
                negative regulation of butyryl-CoA biosynthetic process from acetyl-CoA 0
                negative regulation of butyryl-CoA catabolic process to butanol 0
                negative regulation of butyryl-CoA catabolic process to butyrate 0
                negative regulation of cellular amide catabolic process + 0
                negative regulation of ceramide biosynthetic process + 4
                negative regulation of emericellamide biosynthetic process + 0
                negative regulation of gliotoxin biosynthetic process 0
                negative regulation of glutathione biosynthetic process 0
                negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 0
                negative regulation of penicillin metabolic process + 0
                negative regulation of peptide hormone processing 0
                negative regulation of pseurotin A biosynthetic process 0
                negative regulation of siderophore biosynthetic process + 0
                negative regulation of tensidol A biosynthetic process 0
                negative regulation of tensidol B biosynthetic process 0
                negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA 0
                negative regulation of translation + 182
paths to the root