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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of transcription elongation by RNA polymerase II
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Accession:GO:0034243 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Synonyms:exact_synonym: regulation of RNA elongation from RNA polymerase II promoter;   regulation of transcription elongation from RNA polymerase II promoter
 related_synonym: regulation of gene-specific transcription elongation from RNA polymerase II promoter
 alt_id: GO:0090039


show annotations for term's descendants           Sort by:
regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eaf1 ELL associated factor 1 involved_in ISO
IEA 		(PMID:32087315)
GO_REF:0000107 		RGD
Ensembl		 PMID:32087315 GO_REF:0000107 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071 		JBrowse link
G Eaf2 ELL associated factor 2 involved_in ISO (PMID:32087315) RGD PMID:32087315 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IMP RGD PMID:31644904 RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO
IEA 		(PMID:9450929)
GO_REF:0000107 		RGD
Ensembl		 PMID:9450929 GO_REF:0000107 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Tox4 TOX high mobility group box family member 4 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:24,989,246...25,002,833
Ensembl chr15:24,988,853...25,002,833 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO
IEA 		(PMID:31128943)
GO_REF:0000107 		RGD
Ensembl		 PMID:31128943 GO_REF:0000107 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Zmynd11 zinc finger, MYND-type containing 11 involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:24590075) 		GO_Central
Ensembl
InterPro
RGD		 PMID:24590075 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902 		JBrowse link
negative regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA 		(PMID:10318824), (PMID:19204372)
GO_REF:0000107 		RGD
Ensembl		 PMID:10318824 PMID:19204372 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO
IEA 		(PMID:15716352)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716352 GO_REF:0000107 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO
IEA 		MGI:2661097 (PMID:19303854)
GO_REF:0000107 		RGD
Ensembl		 PMID:19303854 GO_REF:0000107 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hexim1 HEXIM P-TEFb complex subunit 1 involved_in ISO
ISS 		(PMID:14580347)
GO_REF:0000024 		RGD
UniProt		 PMID:14580347 GO_REF:0000024 NCBI chr10:88,062,808...88,064,920
Ensembl chr10:88,062,803...88,066,189 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO 		GO_REF:0000107
(PMID:10490622) 		Ensembl
RGD		 PMID:10490622 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Nelfa negative elongation factor complex member A involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:12612062)
GO_REF:0000033
(PMID:21670248)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:12612062 PMID:21670248 GO_REF:0000033 GO_REF:0000107 NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO
IBA
IEA 		(PMID:12612062)
GO_REF:0000033
(PMID:19340312), (PMID:24656816), (PMID:25773599)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:12612062 PMID:19340312 PMID:24656816 PMID:25773599 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Nelfcd negative elongation factor complex member C/D involved_in ISO
IBA
IEA 		(PMID:12612062)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:12612062 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884 		JBrowse link
G Nelfe negative elongation factor complex member E involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:12612062), (PMID:14701750), (PMID:27256882)
GO_REF:0000033
(PMID:31399344)
(PMID:21670248)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:12612062 PMID:14701750 PMID:21670248 PMID:27256882 PMID:31399344 GO_REF:0000033 GO_REF:0000107 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
IEA 		(PMID:35393539)
GO_REF:0000107 		RGD
Ensembl		 PMID:35393539 GO_REF:0000107 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:31677974) 		Ensembl
UniProt
RGD		 PMID:31677974 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1r10 protein phosphatase 1, regulatory subunit 10 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:31677974) 		UniProt
Ensembl
RGD		 PMID:31677974 GO_REF:0000024 GO_REF:0000107 NCBI chr20:2,822,995...2,838,125
Ensembl chr20:2,822,995...2,837,611 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISO
ISS 		(PMID:23748380)
GO_REF:0000024 		RGD
UniProt		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISS
ISO 		GO_REF:0000024
(PMID:20550933) 		UniProt
RGD		 PMID:20550933 GO_REF:0000024 NCBI chr11:81,991,352...82,013,306
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO
ISS 		(PMID:20550933)
GO_REF:0000024 		RGD
UniProt		 PMID:20550933 GO_REF:0000024 NCBI chr20:7,683,890...7,708,437
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		(PMID:17284610)
GO_REF:0000107 		RGD
Ensembl		 PMID:17284610 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sirt6 sirtuin 6 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:25247314), (PMID:31399344)
GO_REF:0000107
(PMID:31399344) 		RGD
Ensembl		 PMID:25247314 PMID:31399344 GO_REF:0000107 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit acts_upstream_of_or_within ISO (PMID:21670248) RGD PMID:21670248 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
positive regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 acts_upstream_of_or_within
involved_in 		ISO (PMID:18039861)
(PMID:19103749) 		RGD PMID:18039861 PMID:19103749 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Btbd18 BTB domain containing 18 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042 		JBrowse link
G Cbx7 chromobox 7 IMP RGD PMID:19706751 RGD:9586729 NCBI chr 7:113,341,030...113,358,716
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnk cyclin K involved_in ISO
IEA 		(PMID:22988298), (PMID:26748711)
GO_REF:0000107 		RGD
Ensembl		 PMID:22988298 PMID:26748711 GO_REF:0000107 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ccnt1 cyclin T1 involved_in ISO
IEA 		(PMID:30134174), (PMID:35393539), (PMID:9499409)
GO_REF:0000107 		RGD
Ensembl		 PMID:9499409 PMID:30134174 PMID:35393539 GO_REF:0000107 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 involved_in ISO (PMID:9499409) RGD PMID:9499409 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Cdc73 cell division cycle 73 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in ISO
IBA
IEA 		(PMID:22988298)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22988298 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO
IEA
IBA 		(PMID:26748711)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26748711 GO_REF:0000033 GO_REF:0000107 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISS
IBA
ISO
IEA 		GO_REF:0000024
GO_REF:0000033
(PMID:14701750), (PMID:30134174), (PMID:9499409)
GO_REF:0000107 		UniProt
GO_Central
RGD
Ensembl		 PMID:9499409 PMID:14701750 PMID:30134174 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:2148567|MGI:3841145 (PMID:30478225) 		Ensembl
RGD		 PMID:30478225 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in ISO (PMID:15894542) RGD PMID:15894542 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO
IEA 		(PMID:15716352)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716352 GO_REF:0000107 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ell elongation factor for RNA polymerase II involved_in ISO
IEA
IBA 		(PMID:23932780)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23932780 GO_REF:0000033 GO_REF:0000107 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781 		JBrowse link
G Ell2l1 elongation factor for RNA polymerase II 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Eloc elongin C IDA RGD PMID:8202474 RGD:730008 NCBI chr 5:7,444,769...7,461,187
Ensembl chr 5:2,661,724...2,677,890
Ensembl chr20:2,661,724...2,677,890 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Ldb1 LIM domain binding 1 involved_in ISO
IEA 		(PMID:20570862)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570862 GO_REF:0000107 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IMP RGD PMID:18086894 RGD:2292639 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:39603239), (PMID:39603240)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:39603239 PMID:39603240 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1r10 protein phosphatase 1, regulatory subunit 10 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:39603239), (PMID:39603240)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:39603239 PMID:39603240 GO_REF:0000024 GO_REF:0000107 NCBI chr20:2,822,995...2,838,125
Ensembl chr20:2,822,995...2,837,611 		JBrowse link
G Pwwp2a PWWP domain containing 2A involved_in ISO
IEA 		(PMID:30228260)
GO_REF:0000107 		RGD
Ensembl		 PMID:30228260 GO_REF:0000107 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308 		JBrowse link
G Pwwp2b PWWP domain containing 2B involved_in ISO
IEA 		(PMID:30228260)
GO_REF:0000107 		RGD
Ensembl		 PMID:30228260 GO_REF:0000107 NCBI chr 1:194,040,395...194,059,979
Ensembl chr 1:194,041,341...194,059,958 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in IEA
ISO 		GO_REF:0000107
(PMID:16427012) 		Ensembl
RGD		 PMID:16427012 GO_REF:0000107 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (PMID:17234882) RGD PMID:17234882 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Tox4 TOX high mobility group box family member 4 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:39603239), (PMID:39603240)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:39603239 PMID:39603240 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,989,246...25,002,833
Ensembl chr15:24,988,853...25,002,833 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in IEA
ISO 		GO_REF:0000107
(PMID:39603239), (PMID:39603240) 		Ensembl
RGD		 PMID:39603239 PMID:39603240 GO_REF:0000107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 involved_in ISO
IEA 		UniProtKB:P50750 (PMID:26655721), (PMID:30134174)
GO_REF:0000107 		RGD
Ensembl		 PMID:26655721 PMID:30134174 GO_REF:0000107 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        biosynthetic process 8630
          macromolecule biosynthetic process 7628
            gene expression 7191
              DNA-templated transcription 3579
                DNA-templated transcription elongation 124
                  transcription elongation by RNA polymerase II 110
                    regulation of transcription elongation by RNA polymerase II 53
                      negative regulation of transcription elongation by RNA polymerase II 19
                      positive regulation of transcription elongation by RNA polymerase II 32
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleic acid metabolic process 5283
              RNA metabolic process 4695
                RNA biosynthetic process 4407
                  DNA-templated transcription 3579
                    DNA-templated transcription elongation 124
                      regulation of DNA-templated transcription elongation 59
                        regulation of transcription elongation by RNA polymerase II 53
                          negative regulation of transcription elongation by RNA polymerase II 19
                          positive regulation of transcription elongation by RNA polymerase II 32
paths to the root