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ONTOLOGY REPORT - ANNOTATIONS


Term:stress granule assembly
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Accession:GO:0034063 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule.
Synonyms:exact_synonym: SG assembly


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stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn2 ataxin 2 involved_in IBA
ISO
PMID:21873635
(PMID:17392519)
RGD PMID:17392519, PMID:21873635 RGD:13792537 NCBI chr12:40,264,601...40,335,637
Ensembl chr12:40,266,662...40,332,612
JBrowse link
G Atxn2l ataxin 2-like involved_in IBA
ISO
PMID:21873635
(PMID:23209657)
RGD PMID:23209657, PMID:21873635 RGD:13792537 NCBI chr 1:197,908,087...197,920,400
Ensembl chr 1:197,908,094...197,919,560
JBrowse link
G Bicd1 BICD cargo adaptor 1 involved_in ISO (MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:4397616 NCBI chr 4:184,018,845...184,167,628
Ensembl chr 4:184,019,087...184,165,540
JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISS
ISO
GO_REF:0000024
(MGI:4418610|PMID:17967451)
UniProt
RGD
PMID:17967451 GO_REF:0000024 MGI:4418610 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO
ISS
(PMID:29395067)
GO_REF:0000024
RGD
UniProt
PMID:29395067 GO_REF:0000024 NCBI chr 2:205,525,194...205,552,987
Ensembl chr 2:205,525,204...205,552,991
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:21883093)
(MGI:6368386|PMID:31511697)
RGD PMID:21883093 PMID:31511697 MGI:6368386 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4397616|PMID:19825938)
Ensembl
RGD
PMID:19825938 GO_REF:0000107 MGI:4397616 NCBI chr 6:134,958,854...135,085,769
Ensembl chr 6:134,958,854...135,085,769
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr 6:102,048,372...102,073,041
Ensembl chr 6:102,048,372...102,073,041
JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO (PMID:20180778), (PMID:23163895) RGD PMID:20180778 PMID:23163895 NCBI chr10:40,812,858...40,846,252
Ensembl chr10:40,812,858...40,846,252
JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:17,437,145...17,523,254
Ensembl chr14:17,492,081...17,520,792
JBrowse link
G Grb7 growth factor receptor bound protein 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284766|PMID:18273060)
UniProt
RGD
PMID:18273060 GO_REF:0000024 MGI:5284766 NCBI chr10:86,393,186...86,408,893
Ensembl chr10:86,399,827...86,409,348
JBrowse link
G LOC100364335 cold shock domain-containing protein E1-like involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:28,220,255...28,223,601
Ensembl chr 2:205,525,204...205,552,991
Ensembl chr19:205,525,204...205,552,991
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:90,200,866...90,246,292
Ensembl chr 1:90,200,876...90,246,297
JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 involved_in ISO (PMID:24550447) RGD PMID:24550447 NCBI chr19:11,425,301...11,451,085
Ensembl chr19:11,425,105...11,451,278
JBrowse link
G Prrc2c proline-rich coiled-coil 2C involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr13:80,544,789...80,614,925 JBrowse link
G Pum2 pumilio RNA-binding family member 2 acts_upstream_of_or_within ISO (MGI:3629346|PMID:16775137) RGD PMID:16775137 MGI:3629346 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27037575)
UniProt
Ensembl
RGD
PMID:27037575 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G Rps23 ribosomal protein S23 involved_in ISO (PMID:28257692) RGD PMID:28257692 NCBI chr 2:19,823,234...19,824,804
Ensembl chr 2:19,823,234...19,824,804
JBrowse link
G Ubap2l ubiquitin associated protein 2-like involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr 2:189,334,341...189,400,334
Ensembl chr 2:189,334,341...189,400,323
JBrowse link
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 3:176,415,911...176,431,423
Ensembl chr 3:176,415,914...176,431,423
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 2:100,677,388...100,711,365
Ensembl chr 2:100,677,411...100,710,417
JBrowse link
negative regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Styxl1 serine/threonine/tyrosine interacting-like 1 involved_in ISO
IBA
(PMID:20180778), (PMID:23163895)
PMID:21873635
RGD PMID:20180778 PMID:23163895, PMID:21873635 RGD:13792537 NCBI chr12:23,954,563...23,987,155
Ensembl chr12:23,954,574...23,987,271
JBrowse link
positive regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr10:40,812,858...40,846,252
Ensembl chr10:40,812,858...40,846,252
JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr14:17,437,145...17,523,254
Ensembl chr14:17,492,081...17,520,792
JBrowse link
regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO UniProtKB:Q8BRK8 (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q5EG47 (MGI:6148443|PMID:27430620)
Ensembl
RGD
PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            organelle assembly 956
              stress granule assembly 26
                negative regulation of stress granule assembly 1
                positive regulation of stress granule assembly 2
                regulation of stress granule assembly + 5
paths to the root