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ONTOLOGY REPORT - ANNOTATIONS

Term:phagophore assembly site membrane
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Accession:GO:0034045 term browser browse the term
Definition:A cellular membrane associated with the phagophore assembly site.
Synonyms:exact_synonym: PAS membrane
 narrow_synonym: pre-autophagosomal structure membrane
 related_synonym: isolation membrane;   phagophore

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phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg13 autophagy related 13 located_in
is_active_in		 IEA
ISO		 (PMID:19597335) Ensembl
UniProt		 PMID:19597335 GO_REF:0000107 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg16l1 autophagy related 16 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514 		JBrowse link
G Atg16l2 autophagy related 16 like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:2,070,985...2,084,141
Ensembl chrNW_004936498:2,070,881...2,083,968 		JBrowse link
G Atg2a autophagy related 2A located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg5 autophagy related 5 located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg9a autophagy related 9A located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,317,258...3,324,208
Ensembl chrNW_004936599:3,317,258...3,324,213 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
G Wdr45 WD repeat domain 45 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731 		JBrowse link
G Wdr45b WD repeat domain 45B located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936923:173,515...192,616
Ensembl chrNW_004936923:173,515...192,580 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822 		JBrowse link
extrinsic component of phagophore assembly site membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16767
    cellular anatomical entity 16677
      phagophore assembly site 38
        phagophore assembly site membrane 21
          ATG2-ATG18 complex 0
          extrinsic component of phagophore assembly site membrane 1
Path 2
Term Annotations click to browse term
  cellular_component 16767
    cellular anatomical entity 16677
      intracellular anatomical structure 13028
        cytoplasm 10264
          phagophore assembly site 38
            phagophore assembly site membrane 21
              ATG2-ATG18 complex 0
              extrinsic component of phagophore assembly site membrane 1
paths to the root