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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside bisphosphate biosynthetic process
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Accession:GO:0034030 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: ribonucleoside bisphosphate anabolism;   ribonucleoside bisphosphate biosynthesis;   ribonucleoside bisphosphate formation;   ribonucleoside bisphosphate synthesis


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IDA
IBA		 (MGI:1202528|PMID:9545271), (MGI:77543|PMID:7493984)
(MGI:2448448|PMID:12414806)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:7493984 PMID:9545271 PMID:12414806 PMID:21873635 GO_REF:0000096 MGI:1202528 MGI:2448448 MGI:4834177 MGI:6201960 MGI:77543 NCBI chr 3:131,270,626...131,349,432
Ensembl chr 3:131,270,529...131,349,432 		JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IBA
IMP
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:1277343|PMID:9671738)
(MGI:1347713|PMID:10559207)		 GO_Central
MGI
UniProt		 PMID:9671738 PMID:10559207 PMID:21873635 GO_REF:0000096 MGI:1277343 MGI:1347713 MGI:4834177 MGI:6201960 NCBI chr19:32,573,072...32,644,587
Ensembl chr19:32,573,190...32,644,587 		JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
G Acly ATP citrate lyase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:100,367,178...100,418,826
Ensembl chr11:100,367,179...100,418,826 		JBrowse link
G Acss1 acyl-CoA synthetase short-chain family member 1 acts_upstream_of_or_within
involved_in		 IDA
IBA
ISO		 (MGI:2151932|PMID:11150295)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11150295 PMID:21873635 GO_REF:0000096 MGI:2151932 MGI:4834177 MGI:6201960 NCBI chr 2:150,460,031...150,510,160
Ensembl chr 2:150,460,025...150,510,420 		JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (MGI:2151932|PMID:11150295)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11150295 PMID:21873635 MGI:2151932 MGI:6201960 NCBI chr 2:155,359,963...155,404,663
Ensembl chr 2:155,359,868...155,427,644 		JBrowse link
G Dip2a disco interacting protein 2 homolog A involved_in IDA (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chr10:76,098,581...76,181,194
Ensembl chr10:76,095,263...76,181,125 		JBrowse link
G Mlycd malonyl-CoA decarboxylase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
RGD
GO_Central		 PMID:17316539 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 RGD:1600790 NCBI chr 8:120,121,591...120,148,577
Ensembl chr 8:120,121,617...120,137,841 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:119,275,724...119,279,673
Ensembl chr 4:119,275,727...119,279,617 		JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:150,460,031...150,510,160
Ensembl chr 2:150,460,025...150,510,420 		JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP
IC		 (MGI:6201960|PMID:21873635)
(MGI:5819147|PMID:27621431)
(MGI:3719938|PMID:17314311)
(MGI:2388500|PMID:12108679)		 RGD
GO_Central
MGI		 PMID:7487891 PMID:12108679 PMID:17314311 PMID:21873635 PMID:27621431 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:2388500 MGI:3719938 MGI:4417868 MGI:4834177 MGI:5819147 MGI:6201960 RGD:1599112 NCBI chr 9:50,545,933...50,571,080
Ensembl chr 9:50,545,933...50,571,080 		JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within
involved_in		 ISO
IC
IMP		 (MGI:1101694|PMID:9405644)
(MGI:3719938|PMID:17314311)
(MGI:5819147|PMID:27621431)		 RGD
MGI		 PMID:7487891 PMID:9405644 PMID:17314311 PMID:27621431 GO_REF:0000008 GO_REF:0000096 MGI:1101694 MGI:2154458 MGI:3719938 MGI:4417868 MGI:5819147 RGD:1599112 NCBI chr12:31,381,561...31,401,470
Ensembl chr12:31,381,276...31,401,452 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 acts_upstream_of_or_within
involved_in		 IMP
IC		 (MGI:5428352|PMID:22628558)
(MGI:5428353|PMID:22628554)		 MGI PMID:22628554 PMID:22628558 MGI:5428352 MGI:5428353 NCBI chr17:8,502,590...8,516,499
Ensembl chr17:8,501,736...8,516,493 		JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 acts_upstream_of_or_within
involved_in		 IMP (MGI:5428352|PMID:22628558)
(MGI:5576400|PMID:24910426)		 MGI PMID:22628558 PMID:24910426 MGI:5428352 MGI:5576400 NCBI chr 1:165,288,829...165,308,787
Ensembl chr 1:165,288,206...165,308,783 		JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:3817854|PMID:18586888)		 MGI
GO_Central
RGD		 PMID:7487891 PMID:18586888 PMID:21873635 GO_REF:0000096 MGI:3817854 MGI:4834177 MGI:6201960 RGD:1599112 NCBI chr  X:158,905,215...158,921,426
Ensembl chr  X:158,905,205...158,921,409 		JBrowse link
G Pdha2 pyruvate dehydrogenase E1 alpha 2 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:6201960|PMID:21873635) RGD
GO_Central
MGI		 PMID:7487891 PMID:21873635 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:4417868 MGI:6201960 RGD:1599112 NCBI chr 3:140,915,765...140,918,116
Ensembl chr 3:140,915,765...140,918,116 		JBrowse link
G Pdhb pyruvate dehydrogenase (lipoamide) beta involved_in
acts_upstream_of_or_within		 IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:7487891 PMID:21873635 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:4417868 MGI:6201960 RGD:1599112 NCBI chr14:14,296,470...14,303,782
Ensembl chr14:14,296,748...14,303,777 		JBrowse link
G Pdhx pyruvate dehydrogenase complex, component X acts_upstream_of_or_within
involved_in		 ISO (PMID:24534072) MGI
ComplexPortal		 PMID:24534072 GO_REF:0000008 MGI:2154458 NCBI chr 2:102,851,400...102,903,858
Ensembl chr 2:102,851,420...102,903,858 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO (MGI:7367108|PMID:8726225) MGI PMID:8726225 MGI:7367108 NCBI chr11:52,251,905...52,280,224
Ensembl chr11:52,251,687...52,280,224 		JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
G Acot7 acyl-CoA thioesterase 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:152,258,872...152,356,312
Ensembl chr 4:152,262,591...152,356,312 		JBrowse link
G Coasy Coenzyme A synthase acts_upstream_of_or_within
involved_in		 ISO
IDA
IBA		 (MGI:3029834|PMID:11994049)
(MGI:2181228|PMID:11980892)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11980892 PMID:11994049 PMID:21873635 GO_REF:0000096 MGI:2181228 MGI:3029834 MGI:4834177 MGI:6201960 NCBI chr11:100,973,391...100,977,445
Ensembl chr11:100,973,391...100,977,445 		JBrowse link
G Dcakd dephospho-CoA kinase domain containing involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:102,884,873...102,919,107
Ensembl chr11:102,884,873...102,919,159 		JBrowse link
G Pank1 pantothenate kinase 1 acts_upstream_of_or_within
involved_in		 IDA
IMP
TAS
IBA		 (MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)
(MGI:2182911|PMID:12095680)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:12095680 PMID:16040613 PMID:20559429 PMID:21873635 PMID:22815849 MGI:2182911 MGI:3607004 MGI:4461354 MGI:5446555 MGI:6201960 NCBI chr19:34,784,335...34,862,420
Ensembl chr19:34,784,340...34,856,855 		JBrowse link
G Pank2 pantothenate kinase 2 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5446555|PMID:22815849)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:22815849 MGI:5446555 MGI:6201960 NCBI chr 2:131,103,928...131,141,108
Ensembl chr 2:131,104,415...131,141,108 		JBrowse link
G Pank3 pantothenate kinase 3 acts_upstream_of_or_within
involved_in		 IDA
IBA
ISO		 (MGI:3607004|PMID:16040613)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16040613 PMID:21873635 GO_REF:0000096 MGI:3607004 MGI:4834177 MGI:6201960 NCBI chr11:35,660,322...35,682,112
Ensembl chr11:35,660,311...35,682,112 		JBrowse link
G Pank4 pantothenate kinase 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:155,048,580...155,065,395
Ensembl chr 4:155,048,580...155,065,395 		JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:57,292,378...57,347,440
Ensembl chr 9:57,292,378...57,347,407 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:119,275,724...119,279,673
Ensembl chr 4:119,275,727...119,279,617 		JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-Coenzyme A dehydrogenase involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:6895440 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:1598697 NCBI chr 8:85,613,016...85,629,378
Ensembl chr 8:85,613,022...85,620,550 		JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long-chain family member 1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr 8:46,924,074...46,989,088
Ensembl chr 8:46,924,074...46,989,088 		JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 involved_in ISO RGD
MGI		 PMID:16466685 GO_REF:0000096 MGI:4417868 RGD:2312800 NCBI chr  X:141,100,989...141,173,792
Ensembl chr  X:141,100,989...141,173,531 		JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) RGD
GO_Central
MGI		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr19:55,240,298...55,285,060
Ensembl chr19:55,240,370...55,286,152 		JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr11:54,194,580...54,255,582
Ensembl chr11:54,194,624...54,255,582 		JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acacb acetyl-Coenzyme A carboxylase beta involved_in IMP (MGI:3804564|PMID:18487439) UniProt PMID:18487439 MGI:3804564 NCBI chr 5:114,284,748...114,388,822
Ensembl chr 5:114,284,596...114,388,822 		JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase, isoenzyme 1 involved_in IMP (MGI:5487511|PMID:22195962) UniProt PMID:22195962 MGI:5487511 NCBI chr 2:71,703,398...71,734,202
Ensembl chr 2:71,703,568...71,734,202 		JBrowse link
G Pdk2 pyruvate dehydrogenase kinase, isoenzyme 2 involved_in IMP (MGI:5428826|PMID:22360721) UniProt PMID:22360721 MGI:5428826 NCBI chr11:94,917,084...94,932,197
Ensembl chr11:94,917,084...94,932,180 		JBrowse link
G Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:92,798,923...92,875,756
Ensembl chr  X:92,808,213...92,875,807 		JBrowse link
G Pdk4 pyruvate dehydrogenase kinase, isoenzyme 4 involved_in
acts_upstream_of_or_within		 IMP
ISO
TAS		 (MGI:3692363|PMID:16606348)
(MGI:1349328|PMID:10548532)		 UniProt
MGI		 PMID:10548532 PMID:16606348 GO_REF:0000096 MGI:1349328 MGI:3692363 MGI:4834177 NCBI chr 6:5,483,351...5,496,278
Ensembl chr 6:5,483,351...5,496,309 		JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein, alpha acts_upstream_of_or_within IMP
IDA		 (MGI:3628986|PMID:16636270)
(MGI:3629421|PMID:16734431)		 MGI PMID:16636270 PMID:16734431 MGI:3628986 MGI:3629421 NCBI chr 6:60,708,557...60,806,839
Ensembl chr 6:60,708,559...60,806,839 		JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-Coenzyme A mutase involved_in IDA (MGI:64406|PMID:7904153) MGI PMID:7904153 MGI:64406 NCBI chr17:41,245,576...41,272,880
Ensembl chr17:41,245,576...41,272,879 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      organic substance metabolic process 11226
        organophosphate metabolic process 953
          nucleoside phosphate metabolic process 520
            nucleoside bisphosphate metabolic process 115
              nucleoside bisphosphate biosynthetic process 38
                ribonucleoside bisphosphate biosynthetic process 38
                  acyl-CoA biosynthetic process + 28
                  coenzyme A biosynthetic process + 10
                  purine ribonucleoside bisphosphate biosynthetic process + 2
Path 2
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      cellular metabolic process 7070
        cellular aromatic compound metabolic process 3067
          nucleobase-containing compound metabolic process 2805
            nucleobase-containing small molecule metabolic process 581
              nucleoside phosphate metabolic process 520
                nucleoside bisphosphate metabolic process 115
                  nucleoside bisphosphate biosynthetic process 38
                    ribonucleoside bisphosphate biosynthetic process 38
                      acyl-CoA biosynthetic process + 28
                      coenzyme A biosynthetic process + 10
                      purine ribonucleoside bisphosphate biosynthetic process + 2
paths to the root