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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside bisphosphate biosynthetic process
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Accession:GO:0034030 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: ribonucleoside bisphosphate anabolism;   ribonucleoside bisphosphate biosynthesis;   ribonucleoside bisphosphate formation;   ribonucleoside bisphosphate synthesis


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2448448|PMID:12414806) MGI
Ensembl		 PMID:12414806 GO_REF:0000107 MGI:2448448 NCBI chr32:28,136,741...28,235,529
Ensembl chr32:28,136,909...28,235,484 		JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:37,725,205...37,745,103
Ensembl chr26:37,725,616...37,743,928 		JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:24,361,301...24,379,807
Ensembl chr 5:24,361,301...24,379,812 		JBrowse link
G ACLY ATP citrate lyase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 9:20,929,530...20,974,200
Ensembl chr 9:20,929,614...20,973,663 		JBrowse link
G ACSS1 acyl-CoA synthetase short chain family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2151932|PMID:11150295) MGI
Ensembl		 PMID:11150295 GO_REF:0000107 MGI:2151932 NCBI chr23:1,192,771...1,251,724
Ensembl chr23:1,184,392...1,252,255 		JBrowse link
G ACSS2 acyl-CoA synthetase short chain family member 2 acts_upstream_of_or_within ISO (MGI:2151932|PMID:11150295) MGI PMID:11150295 MGI:2151932 NCBI chr24:23,928,800...23,973,383
Ensembl chr24:23,928,838...23,972,651 		JBrowse link
G DIP2A disco interacting protein 2 homolog A involved_in ISO (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chr31:39,695,620...39,778,527
Ensembl chr31:39,686,465...39,777,484 		JBrowse link
G MLYCD malonyl-CoA decarboxylase involved_in ISO
IEA		 RGD
Ensembl		 PMID:17316539 GO_REF:0000107 RGD:1600790 NCBI chr 5:68,385,058...68,399,965
Ensembl chr 5:68,384,618...68,399,965 		JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:813,435...817,732
Ensembl chr15:813,870...816,825 		JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSS1 acyl-CoA synthetase short chain family member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:1,192,771...1,251,724
Ensembl chr23:1,184,392...1,252,255 		JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLAT dihydrolipoamide S-acetyltransferase involved_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:7487891 GO_REF:0000002 GO_REF:0000107 RGD:1599112 NCBI chr 5:21,062,833...21,094,235
Ensembl chr 5:21,064,026...21,094,153 		JBrowse link
G DLD dihydrolipoamide dehydrogenase involved_in ISO
IEA		 RGD
Ensembl		 PMID:7487891 GO_REF:0000107 RGD:1599112 NCBI chr18:12,703,340...12,734,408
Ensembl chr18:12,703,341...12,734,479 		JBrowse link
G LOC119879505 pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like involved_in IEA InterPro GO_REF:0000002
G MPC1 mitochondrial pyruvate carrier 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5428352|PMID:22628558) MGI PMID:22628558 MGI:5428352 NCBI chr 1:54,379,195...54,395,697 JBrowse link
G MPC2 mitochondrial pyruvate carrier 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:5428352|PMID:22628558)
(MGI:5576400|PMID:24910426)		 MGI PMID:22628558 PMID:24910426 MGI:5428352 MGI:5576400 NCBI chr 7:30,544,986...30,574,102
Ensembl chr 7:30,545,152...30,574,080 		JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 involved_in
acts_upstream_of_or_within		 ISO
IEA
ISS		 (MGI:3817854|PMID:18586888) RGD
Ensembl
MGI
InterPro
UniProt		 PMID:7487891 PMID:18586888 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 MGI:3817854 RGD:1599112 NCBI chr  X:15,338,364...15,354,011
Ensembl chr  X:15,338,202...15,387,458 		JBrowse link
G PDHA2 pyruvate dehydrogenase E1 subunit alpha 2 ISO RGD PMID:7487891 RGD:1599112
G PDHB pyruvate dehydrogenase E1 subunit beta involved_in ISO
IEA		 RGD
InterPro		 PMID:7487891 GO_REF:0000002 RGD:1599112 NCBI chr20:32,185,420...32,191,592 JBrowse link
G PDHX pyruvate dehydrogenase complex component X involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr18:32,947,883...33,011,845
Ensembl chr18:32,917,858...33,011,819 		JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:24,361,301...24,379,807
Ensembl chr 5:24,361,301...24,379,812 		JBrowse link
G ACOT7 acyl-CoA thioesterase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:60,153,616...60,239,254
Ensembl chr 5:60,153,616...60,239,239 		JBrowse link
G COASY Coenzyme A synthase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2181228|PMID:11980892) MGI
InterPro
Ensembl		 PMID:11980892 GO_REF:0000002 GO_REF:0000107 MGI:2181228 NCBI chr 9:20,396,334...20,400,542
Ensembl chr 9:20,396,367...20,400,147 		JBrowse link
G DCAKD dephospho-CoA kinase domain containing involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:18,456,538...18,483,106
Ensembl chr 9:18,474,509...18,482,143 		JBrowse link
G PANK1 pantothenate kinase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)		 MGI
InterPro		 PMID:16040613 PMID:20559429 PMID:22815849 GO_REF:0000002 MGI:3607004 MGI:4461354 MGI:5446555 NCBI chr28:4,476,920...4,534,501 JBrowse link
G PANK2 pantothenate kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5446555|PMID:22815849) MGI
Ensembl
InterPro		 PMID:22815849 GO_REF:0000002 GO_REF:0000107 MGI:5446555 NCBI chr24:17,461,406...17,475,248
Ensembl chr24:17,463,447...17,490,360 		JBrowse link
G PANK3 pantothenate kinase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3607004|PMID:16040613) MGI
Ensembl
InterPro		 PMID:16040613 GO_REF:0000002 GO_REF:0000107 MGI:3607004 NCBI chr 4:43,168,407...43,192,451
Ensembl chr 4:43,137,709...43,186,022 		JBrowse link
G PANK4 pantothenate kinase 4 (inactive) involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 5:57,370,624...57,386,095
Ensembl chr 5:57,370,946...57,386,089 		JBrowse link
G PPCDC phosphopantothenoylcysteine decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:38,031,086...38,068,199
Ensembl chr30:38,037,227...38,056,756 		JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr15:813,435...817,732
Ensembl chr15:813,870...816,825 		JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCDH glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chr20:49,284,341...49,290,456
Ensembl chr20:49,284,425...49,290,849 		JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chr16:45,735,675...45,806,235
Ensembl chr16:45,735,703...45,804,970 		JBrowse link
G ACSL4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chr  X:82,864,506...82,943,984
Ensembl chr  X:82,866,823...82,916,789 		JBrowse link
G ACSL5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:16466685 RGD:2312800 NCBI chr28:23,437,838...23,478,763
Ensembl chr28:23,440,387...23,478,762 		JBrowse link
G ACSL6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chr11:20,226,877...20,284,919
Ensembl chr11:20,227,268...20,285,631 		JBrowse link
G ELOVL1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr15:16,798,305...16,803,071
Ensembl chr15:16,798,370...16,802,899 		JBrowse link
G ELOVL3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr28:14,756,019...14,759,893
Ensembl chr28:14,756,653...14,759,580 		JBrowse link
G ELOVL4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chr12:40,845,357...40,876,658
Ensembl chr12:40,846,202...40,876,758 		JBrowse link
G ELOVL5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000104 NCBI chr12:20,732,641...20,807,748
Ensembl chr12:20,734,282...20,807,739 		JBrowse link
G ELOVL6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chr32:30,221,858...30,360,761
Ensembl chr32:30,224,252...30,360,138 		JBrowse link
G ELOVL7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chr 2:47,406,323...47,482,113
Ensembl chr 2:47,296,656...47,482,064 		JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACACA acetyl-CoA carboxylase alpha involved_in IEA UniProt GO_REF:0000041 NCBI chr 9:36,904,204...37,188,096
Ensembl chr 9:36,905,293...37,187,892 		JBrowse link
G ACACB acetyl-CoA carboxylase beta involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr26:17,763,531...17,895,319
Ensembl chr26:17,747,362...17,894,400 		JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:24,361,301...24,379,807
Ensembl chr 5:24,361,301...24,379,812 		JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDK1 pyruvate dehydrogenase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:16,918,329...16,944,532
Ensembl chr36:16,918,058...16,944,620 		JBrowse link
G PDK2 pyruvate dehydrogenase kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:26,099,457...26,116,094
Ensembl chr 9:26,100,343...26,115,423 		JBrowse link
G PDK3 pyruvate dehydrogenase kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:19,994,383...20,058,979
Ensembl chr  X:19,994,393...20,058,485 		JBrowse link
G PDK4 pyruvate dehydrogenase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:20,825,861...20,839,290
Ensembl chr14:20,827,831...20,839,256 		JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNCA synuclein alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3628986|PMID:16636270)
(MGI:3629421|PMID:16734431)		 MGI
Ensembl		 PMID:16636270 PMID:16734431 GO_REF:0000107 MGI:3628986 MGI:3629421 NCBI chr32:12,915,871...13,079,338
Ensembl chr32:12,916,215...13,060,383 		JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMUT methylmalonyl-CoA mutase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,306,074...17,339,921
Ensembl chr12:17,307,522...17,339,897 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16552
    metabolic process 10575
      organic substance metabolic process 10171
        organophosphate metabolic process 858
          nucleoside phosphate metabolic process 463
            nucleoside bisphosphate metabolic process 102
              nucleoside bisphosphate biosynthetic process 45
                ribonucleoside bisphosphate biosynthetic process 45
                  acyl-CoA biosynthetic process + 35
                  coenzyme A biosynthetic process + 10
                  purine ribonucleoside bisphosphate biosynthetic process + 2
Path 2
Term Annotations click to browse term
  biological_process 16552
    metabolic process 10575
      cellular metabolic process 6559
        cellular aromatic compound metabolic process 2779
          nucleobase-containing compound metabolic process 2546
            nucleobase-containing small molecule metabolic process 520
              nucleoside phosphate metabolic process 463
                nucleoside bisphosphate metabolic process 102
                  nucleoside bisphosphate biosynthetic process 45
                    ribonucleoside bisphosphate biosynthetic process 45
                      acyl-CoA biosynthetic process + 35
                      coenzyme A biosynthetic process + 10
                      purine ribonucleoside bisphosphate biosynthetic process + 2
paths to the root