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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside bisphosphate biosynthetic process
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Accession:GO:0034030 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: ribonucleoside bisphosphate anabolism;   ribonucleoside bisphosphate biosynthesis;   ribonucleoside bisphosphate formation;   ribonucleoside bisphosphate synthesis

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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:14747722), (PMID:23207770)
(MGI:1202528|PMID:9545271), (MGI:77543|PMID:7493984)
(MGI:2448448|PMID:12414806)		 UniProt
MGI		 PMID:7493984 PMID:9545271 PMID:12414806 PMID:14747722 PMID:23207770 MGI:1202528 MGI:2448448 MGI:77543 NCBI chrNW_004955496:1,993,423...2,057,384
Ensembl chrNW_004955496:1,993,172...2,059,174 		JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in ISO (PMID:23824674)
(MGI:1277343|PMID:9671738)
(MGI:1347713|PMID:10559207)		 UniProt
MGI		 PMID:9671738 PMID:10559207 PMID:23824674 MGI:1277343 MGI:1347713 NCBI chrNW_004955425:5,186,232...5,259,080
Ensembl chrNW_004955425:5,187,952...5,258,955 		JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806 		JBrowse link
G Acly ATP citrate lyase involved_in ISO (PMID:1371749) BHF-UCL PMID:1371749 NCBI chrNW_004955451:16,058,916...16,091,831
Ensembl chrNW_004955451:16,058,727...16,092,589 		JBrowse link
G Acss1 acyl-CoA synthetase short chain family member 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:16788062)
(MGI:2151932|PMID:11150295)		 UniProt
MGI		 PMID:11150295 PMID:16788062 MGI:2151932 NCBI chrNW_004955415:31,117,542...31,154,654
Ensembl chrNW_004955415:31,117,303...31,154,654 		JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 acts_upstream_of_or_within ISO (MGI:2151932|PMID:11150295) MGI PMID:11150295 MGI:2151932 NCBI chrNW_004955422:26,450,899...26,500,336
Ensembl chrNW_004955422:26,451,598...26,500,546 		JBrowse link
G Dip2a disco interacting protein 2 homolog A involved_in ISO (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chrNW_004955407:42,857,297...42,961,831
Ensembl chrNW_004955407:42,857,344...42,959,265 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO (PMID:29754768) UniProt PMID:29754768 NCBI chrNW_004955537:2,080,865...2,084,199
Ensembl chrNW_004955537:2,080,865...2,085,003 		JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase involved_in ISO (MGI:3719938|PMID:17314311)
(MGI:5819147|PMID:27621431)
(PMID:24534072)		 RGD
MGI
ComplexPortal		 PMID:7487891 PMID:17314311 PMID:24534072 PMID:27621431 MGI:3719938 MGI:5819147 RGD:1599112 NCBI chrNW_004955412:13,718,091...13,746,220
Ensembl chrNW_004955412:13,718,067...13,744,239 		JBrowse link
G Dld dihydrolipoamide dehydrogenase involved_in ISO (MGI:3719938|PMID:17314311)
(MGI:5819147|PMID:27621431)
(PMID:24534072)		 RGD
MGI
ComplexPortal		 PMID:7487891 PMID:17314311 PMID:24534072 PMID:27621431 MGI:3719938 MGI:5819147 RGD:1599112 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5428352|PMID:22628558) MGI PMID:22628558 MGI:5428352 NCBI chrNW_004955439:15,515,966...15,531,618
Ensembl chrNW_004955439:15,516,090...15,531,116 		JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 acts_upstream_of_or_within
involved_in		 ISO (MGI:5576400|PMID:24910426)
(MGI:5428352|PMID:22628558)		 MGI PMID:22628558 PMID:24910426 MGI:5428352 MGI:5576400 NCBI chrNW_004955462:9,177,484...9,193,646 JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 acts_upstream_of_or_within
involved_in		 ISO (MGI:3817854|PMID:18586888)
(PMID:19081061), (PMID:24534072)		 RGD
MGI
ComplexPortal		 PMID:7487891 PMID:18586888 PMID:19081061 PMID:24534072 MGI:3817854 RGD:1599112 NCBI chrNW_004955586:98,492...114,927
Ensembl chrNW_004955586:97,172...114,928 		JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 ISO RGD PMID:7487891 RGD:1599112 NCBI chrNW_004955405:6,383,088...6,383,946 JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta involved_in ISO (PMID:19081061), (PMID:24534072) RGD
UniProt		 PMID:7487891 PMID:19081061 PMID:24534072 RGD:1599112 NCBI chrNW_004955430:1,707,615...1,713,541
Ensembl chrNW_004955430:1,707,615...1,713,541 		JBrowse link
G Pdhx pyruvate dehydrogenase complex component X involved_in ISO (PMID:24534072) ComplexPortal PMID:24534072 NCBI chrNW_004955422:11,335,766...11,405,565
Ensembl chrNW_004955422:11,335,766...11,405,565 		JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806 		JBrowse link
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230
Ensembl chrNW_004955486:6,188,102...6,259,110 		JBrowse link
G Coasy Coenzyme A synthase involved_in
acts_upstream_of_or_within		 ISO (PMID:11923312)
(MGI:2181228|PMID:11980892)		 UniProt
MGI		 PMID:11923312 PMID:11980892 MGI:2181228 NCBI chrNW_004955451:16,457,707...16,460,631
Ensembl chrNW_004955451:16,457,707...16,460,631 		JBrowse link
G Pank1 pantothenate kinase 1 acts_upstream_of_or_within ISO (MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)		 MGI PMID:16040613 PMID:20559429 PMID:22815849 MGI:3607004 MGI:4461354 MGI:5446555 NCBI chrNW_004955425:3,384,023...3,433,808
Ensembl chrNW_004955425:3,384,200...3,432,431 		JBrowse link
G Pank2 pantothenate kinase 2 acts_upstream_of_or_within ISO (MGI:5446555|PMID:22815849) MGI PMID:22815849 MGI:5446555 NCBI chrNW_004955415:14,722,951...14,752,493
Ensembl chrNW_004955415:14,723,087...14,751,423 		JBrowse link
G Pank3 pantothenate kinase 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:20797618)
(MGI:3607004|PMID:16040613)
(PMID:30927326)		 UniProt
MGI		 PMID:16040613 PMID:20797618 PMID:30927326 MGI:3607004 NCBI chrNW_004955408:21,630,849...21,643,432
Ensembl chrNW_004955408:21,630,849...21,652,999 		JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase involved_in ISO (PMID:11923312) UniProt PMID:11923312 NCBI chrNW_004955450:2,971,874...2,985,034
Ensembl chrNW_004955450:2,971,874...2,985,191 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO (PMID:11923312)
(PMID:29754768)		 UniProt PMID:11923312 PMID:29754768 NCBI chrNW_004955537:2,080,865...2,084,199
Ensembl chrNW_004955537:2,080,865...2,085,003 		JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chrNW_004955415:31,952,400...31,958,067
Ensembl chrNW_004955415:31,952,580...31,961,615 		JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955403:24,190,674...24,235,354
Ensembl chrNW_004955403:24,190,674...24,236,780 		JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955490:6,143,833...6,228,395
Ensembl chrNW_004955490:6,143,833...6,228,452 		JBrowse link
G Acsl5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955431:17,477,113...17,524,539
Ensembl chrNW_004955431:17,477,086...17,524,539 		JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004955408:3,336,214...3,391,117
Ensembl chrNW_004955408:3,333,392...3,392,141 		JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acacb acetyl-CoA carboxylase beta involved_in ISO (MGI:3804564|PMID:18487439) UniProt PMID:18487439 MGI:3804564 NCBI chrNW_004955455:10,282,308...10,427,439
Ensembl chrNW_004955455:10,308,192...10,426,076 		JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806 		JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 involved_in ISO (MGI:5487511|PMID:22195962) UniProt PMID:22195962 MGI:5487511 NCBI chrNW_004955449:2,546,790...2,582,402
Ensembl chrNW_004955449:2,549,139...2,582,243 		JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISO (MGI:5428826|PMID:22360721) UniProt PMID:22360721 MGI:5428826 NCBI chrNW_004955451:11,547,660...11,559,266
Ensembl chrNW_004955451:11,547,660...11,559,403 		JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 involved_in ISO (PMID:22865452) UniProt PMID:22865452 NCBI chrNW_004955509:4,809,422...4,888,802
Ensembl chrNW_004955509:4,809,399...4,878,976 		JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 involved_in ISO (PMID:21852536)
(MGI:3692363|PMID:16606348)		 UniProt PMID:16606348 PMID:21852536 MGI:3692363 NCBI chrNW_004955432:12,169,548...12,182,064
Ensembl chrNW_004955432:12,169,435...12,182,409 		JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha acts_upstream_of_or_within ISO (MGI:3629421|PMID:16734431)
(MGI:3628986|PMID:16636270)		 MGI PMID:16636270 PMID:16734431 MGI:3628986 MGI:3629421 NCBI chrNW_004955405:854,011...962,741
Ensembl chrNW_004955405:853,946...965,403 		JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-CoA mutase involved_in ISO (MGI:64406|PMID:7904153) MGI PMID:7904153 MGI:64406 NCBI chrNW_004955411:8,363,142...8,397,839
Ensembl chrNW_004955411:8,363,142...8,399,216 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12345
    metabolic process 7852
      organic substance metabolic process 7560
        organophosphate metabolic process 673
          nucleoside phosphate metabolic process 342
            nucleoside bisphosphate metabolic process 77
              nucleoside bisphosphate biosynthetic process 34
                ribonucleoside bisphosphate biosynthetic process 34
                  acyl-CoA biosynthetic process + 26
                  coenzyme A biosynthetic process + 8
                  purine ribonucleoside bisphosphate biosynthetic process + 2
Path 2
Term Annotations click to browse term
  biological_process 12345
    metabolic process 7852
      cellular metabolic process 4954
        cellular aromatic compound metabolic process 2128
          nucleobase-containing compound metabolic process 1925
            nucleobase-containing small molecule metabolic process 384
              nucleoside phosphate metabolic process 342
                nucleoside bisphosphate metabolic process 77
                  nucleoside bisphosphate biosynthetic process 34
                    ribonucleoside bisphosphate biosynthetic process 34
                      acyl-CoA biosynthetic process + 26
                      coenzyme A biosynthetic process + 8
                      purine ribonucleoside bisphosphate biosynthetic process + 2
paths to the root