Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoside bisphosphate biosynthetic process
go back to main search page
Accession:GO:0034030 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: ribonucleoside bisphosphate anabolism;   ribonucleoside bisphosphate biosynthesis;   ribonucleoside bisphosphate formation;   ribonucleoside bisphosphate synthesis



show annotations for term's descendants           Sort by:
ribonucleoside bisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COASY Coenzyme A synthase involved_in IEA UniProt GO_REF:0000117 NCBI chr17:14,750,246...14,754,417
Ensembl chr17:14,973,662...14,977,797
JBrowse link
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 4:100,119,540...100,225,575
Ensembl chr 4:110,692,601...110,798,619
JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr10:84,383,936...84,471,745
Ensembl chr10:87,890,631...87,977,839
JBrowse link
3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12414806) Ensembl
MGI
TreeGrafter
PMID:12414806 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:100,119,540...100,225,575
Ensembl chr 4:110,692,601...110,798,619
JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr10:84,383,936...84,471,745
Ensembl chr10:87,890,631...87,977,839
JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G ACLY ATP citrate lyase involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:15,385,335...15,447,269
Ensembl chr17:15,615,994...15,664,800
JBrowse link
G ACSS1 acyl-CoA synthetase short chain family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11150295) Ensembl
MGI
TreeGrafter
PMID:11150295 GO_REF:0000107 GO_REF:0000118 NCBI chr20:24,946,629...25,001,311
Ensembl chr20:25,293,511...25,349,017
JBrowse link
G ACSS2 acyl-CoA synthetase short chain family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11150295) TreeGrafter
MGI
PMID:11150295 GO_REF:0000118 NCBI chr20:31,205,104...31,256,263
Ensembl chr20:32,329,721...32,380,526
JBrowse link
G DIP2A disco interacting protein 2 homolog A involved_in ISO (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chr21:32,921,019...33,034,988
Ensembl chr21:46,060,713...46,168,885
JBrowse link
G MLYCD malonyl-CoA decarboxylase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:17316539 GO_REF:0000107 GO_REF:0000118 RGD:1600790 NCBI chr16:64,520,860...64,537,955
Ensembl chr16:83,912,793...83,929,162
JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,756,403...41,773,430
Ensembl chr 1:43,136,720...43,140,620
JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSS1 acyl-CoA synthetase short chain family member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:24,946,629...25,001,311
Ensembl chr20:25,293,511...25,349,017
JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLAT dihydrolipoamide S-acetyltransferase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chr11:106,910,857...106,950,851
Ensembl chr11:110,756,001...110,792,795
JBrowse link
G DLD dihydrolipoamide dehydrogenase involved_in ISO
IEA
RGD
Ensembl
PMID:7487891 GO_REF:0000107 RGD:1599112 NCBI chr 7:99,872,020...99,901,884
Ensembl chr 7:112,593,934...112,623,629
JBrowse link
G MPC1 mitochondrial pyruvate carrier 1 acts_upstream_of_or_within
involved_in
ISO (PMID:22628558) MGI PMID:22628558 NCBI chr 6:164,331,604...164,349,747 JBrowse link
G MPC2 mitochondrial pyruvate carrier 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24910426)
(PMID:22628558)
Ensembl
MGI
PMID:22628558 PMID:24910426 GO_REF:0000107 NCBI chr 1:143,406,611...143,424,508
Ensembl chr 1:147,132,213...147,151,648
JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:18586888) RGD
MGI
TreeGrafter
Ensembl
InterPro
PMID:7487891 PMID:18586888 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chr  X:11,967,944...11,985,837
Ensembl chr  X:19,330,508...19,348,443
JBrowse link
G PDHA2 pyruvate dehydrogenase E1 subunit alpha 2 involved_in ISO
IEA
RGD
TreeGrafter
PMID:7487891 GO_REF:0000118 RGD:1599112 NCBI chr 4:88,213,492...88,216,451
Ensembl chr 4:98,883,109...98,884,853
JBrowse link
G PDHB pyruvate dehydrogenase E1 subunit beta involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chr 3:58,359,753...58,366,094
Ensembl chr 3:59,776,618...59,782,411
JBrowse link
G PDHX pyruvate dehydrogenase complex component X involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr11:34,889,242...34,968,886
Ensembl chr11:34,764,450...34,844,166
JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G ACOT7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:5,030,488...5,154,800 JBrowse link
G COASY Coenzyme A synthase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11980892) Ensembl
MGI
TreeGrafter
InterPro
PMID:11980892 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:14,750,246...14,754,417
Ensembl chr17:14,973,662...14,977,797
JBrowse link
G DCAKD dephospho-CoA kinase domain containing involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr17:12,266,199...12,299,502
Ensembl chr17:12,440,194...12,473,099
JBrowse link
G PANK1 pantothenate kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20559429), (PMID:22815849) InterPro
MGI
TreeGrafter
PMID:20559429 PMID:22815849 GO_REF:0000002 GO_REF:0000118 NCBI chr10:86,302,702...86,428,635
Ensembl chr10:89,847,888...89,912,765
JBrowse link
G PANK2 pantothenate kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22815849) InterPro
MGI
TreeGrafter
Ensembl
PMID:22815849 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:3,924,054...3,959,393
Ensembl chr20:3,723,211...3,757,748
JBrowse link
G PANK3 pantothenate kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16040613) InterPro
MGI
TreeGrafter
Ensembl
PMID:16040613 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:163,913,842...163,944,939
Ensembl chr 5:170,685,413...170,709,211
JBrowse link
G PANK4 pantothenate kinase 4 (inactive) involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chr 1:1,238,821...1,259,139
Ensembl chr 1:2,378,116...2,395,738
JBrowse link
G PPCDC phosphopantothenoylcysteine decarboxylase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr15:53,963,001...54,001,550
Ensembl chr15:73,579,583...73,606,834
JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr 1:41,756,403...41,773,430
Ensembl chr 1:43,136,720...43,140,620
JBrowse link
G SGPL1 sphingosine-1-phosphate lyase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:67,286,349...67,351,574
Ensembl chr10:69,812,092...69,876,438
JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCDH glutaryl-CoA dehydrogenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:6895440 GO_REF:0000118 RGD:1598697 NCBI chr19:12,452,779...12,461,757
Ensembl chr19:13,195,241...13,204,223
JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chr 4:176,920,811...176,991,495
Ensembl chr 4:189,145,403...189,198,646
JBrowse link
G ACSL4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chr  X:98,731,109...98,841,067
Ensembl chr  X:109,206,964...109,310,914
JBrowse link
G ACSL5 acyl-CoA synthetase long chain family member 5 involved_in ISO
IEA
RGD
TreeGrafter
PMID:16466685 GO_REF:0000118 RGD:2312800 NCBI chr10:108,965,559...109,019,240
Ensembl chr10:112,407,161...112,457,892
JBrowse link
G ACSL6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chr 5:127,373,306...127,434,954
Ensembl chr 5:133,537,292...133,586,711
JBrowse link
G ELOVL1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:42,664,818...42,686,475
Ensembl chr 1:44,044,693...44,048,769
JBrowse link
G ELOVL3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr10:98,788,505...98,833,146
Ensembl chr10:102,297,291...102,300,594
JBrowse link
G ELOVL4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:77,798,058...77,830,840
Ensembl chr 6:81,068,882...81,102,050
JBrowse link
G ELOVL5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:52,822,038...52,902,122
Ensembl chr 6:54,451,887...54,485,878
JBrowse link
G ELOVL6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chr 4:102,545,815...102,695,536
Ensembl chr 4:113,110,466...113,260,444
JBrowse link
G ELOVL7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:53,156,518...53,248,839
Ensembl chr 5:54,853,330...54,888,930
JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACACA acetyl-CoA carboxylase alpha involved_in IEA UniProt GO_REF:0000041 NCBI chr17:19,670,114...19,998,903
Ensembl chr17:19,969,205...20,297,651
JBrowse link
G ACACB acetyl-CoA carboxylase beta involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr12:106,692,668...106,845,490
Ensembl chr12:110,086,374...110,239,847
JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDK1 pyruvate dehydrogenase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,841,840...59,958,504
Ensembl chr2B:177,297,840...177,341,113
JBrowse link
G PDK2 pyruvate dehydrogenase kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,185,463...44,202,221
Ensembl chr17:49,060,030...49,076,115
JBrowse link
G PDK3 pyruvate dehydrogenase kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:17,062,278...17,147,489
Ensembl chr  X:24,430,028...24,504,730
JBrowse link
G PDK4 pyruvate dehydrogenase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:87,540,600...87,553,673
Ensembl chr 7:101,128,060...101,141,157
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNCA synuclein alpha acts_upstream_of_or_within ISO (PMID:16734431)
(PMID:16636270)
MGI PMID:16636270 PMID:16734431 NCBI chr 4:82,018,585...82,132,938
Ensembl chr 4:92,737,608...92,850,600
JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMUT methylmalonyl-CoA mutase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,007,500...49,040,470
Ensembl chr 6:50,269,644...50,302,593
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10306
      biosynthetic process 7466
        organophosphate biosynthetic process 498
          nucleoside phosphate biosynthetic process 225
            nucleoside bisphosphate biosynthetic process 45
              ribonucleoside bisphosphate biosynthetic process 45
                acyl-CoA biosynthetic process + 34
                coenzyme A biosynthetic process + 11
                purine ribonucleoside bisphosphate biosynthetic process + 2
Path 2
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10306
      cellular metabolic process 8638
        phosphorus metabolic process 1746
          phosphate-containing compound metabolic process 1721
            nucleoside phosphate metabolic process 540
              nucleoside bisphosphate metabolic process 109
                nucleoside bisphosphate biosynthetic process 45
                  ribonucleoside bisphosphate biosynthetic process 45
                    acyl-CoA biosynthetic process + 34
                    coenzyme A biosynthetic process + 11
                    purine ribonucleoside bisphosphate biosynthetic process + 2
paths to the root