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ONTOLOGY REPORT - ANNOTATIONS


Term:P-body assembly
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Accession:GO:0033962 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
Synonyms:exact_synonym: cytoplasmic mRNA processing body assembly
 related_synonym: P body biogenesis


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P-body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn2 ataxin 2 involved_in ISO (PMID:17392519) RGD PMID:17392519 NCBI chr12:34,754,132...34,851,175
Ensembl chr12:34,754,137...34,851,479
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 acts_upstream_of_or_within ISO MGI:109382 (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:20826699)
(PMID:25995375), (PMID:27342281), (PMID:31422817)
RGD PMID:20826699 PMID:25995375 PMID:27342281 PMID:31422817 PMID:21873635 RGD:13792537 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4397616|PMID:19825938)
Ensembl
RGD
PMID:19825938 GO_REF:0000107 MGI:4397616 NCBI chr 6:129,615,208...129,680,888
Ensembl chr 6:129,609,397...129,680,883
JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,106,129...58,151,685
Ensembl chr 8:58,106,175...58,151,671
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:16157702), (PMID:22966201), (PMID:27342281) RGD PMID:16157702 PMID:22966201 PMID:27342281 NCBI chr14:78,056,115...78,099,846
Ensembl chr14:78,056,297...78,098,793
JBrowse link
G Limd1 LIM domain containing 1 acts_upstream_of_or_within ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in IBA
ISO
PMID:21873635
(PMID:16484376), (PMID:17074753), (PMID:29510985)
RGD PMID:16484376 PMID:17074753 PMID:29510985 PMID:21873635 RGD:13792537 NCBI chr 1:86,964,800...87,009,325
Ensembl chr 1:86,964,828...87,009,276
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr 2:135,271,189...135,291,407
Ensembl chr 2:135,271,189...135,291,400
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20584987)
UniProt
RGD
PMID:20584987 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857
JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:109,072,958...109,087,425
Ensembl chr 3:109,075,290...109,083,253
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:4819285|PMID:20639877) RGD PMID:20639877 MGI:4819285 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
negative regulation of cytoplasmic mRNA processing body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Patl2 PAT1 homolog 2 acts_upstream_of_or_within ISO (MGI:4889175|PMID:20826699) RGD PMID:20826699 MGI:4889175 NCBI chr 3:109,072,958...109,087,425
Ensembl chr 3:109,075,290...109,083,253
JBrowse link
positive regulation of cytoplasmic mRNA processing body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:21976065) RGD PMID:21976065 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in ISO (PMID:21299754) RGD PMID:21299754 NCBI chr 7:52,130,444...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
(PMID:21233283)
GO_REF:0000107
RGD
Ensembl
PMID:21233283 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025
Ensembl chr10:33,980,831...34,031,025
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like involved_in ISO (PMID:21233283) RGD PMID:21233283 NCBI chr14:13,410,501...13,502,511
Ensembl chr14:13,411,281...13,498,203
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:729,146...747,744
Ensembl chr 7:729,562...747,744
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:3807625 NCBI chr12:7,476,707...7,595,380
Ensembl chr12:7,476,697...7,599,204
JBrowse link

Term paths to the root
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  biological_process 19492
    cellular process 18340
      cellular component organization or biogenesis 6481
        cellular component organization 6235
          organelle organization 3752
            organelle assembly 956
              non-membrane-bounded organelle assembly 425
                P-body assembly 20
                  negative regulation of cytoplasmic mRNA processing body assembly 1
                  positive regulation of cytoplasmic mRNA processing body assembly 6
                  regulation of cytoplasmic mRNA processing body assembly + 7
paths to the root