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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside bisphosphate biosynthetic process
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Accession:GO:0033866 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: nucleoside bisphosphate anabolism;   nucleoside bisphosphate biosynthesis;   nucleoside bisphosphate formation;   nucleoside bisphosphatehate synthesis


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IDA
IBA		 (MGI:1202528|PMID:9545271), (MGI:77543|PMID:7493984)
(MGI:2448448|PMID:12414806)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:7493984 PMID:9545271 PMID:12414806 PMID:21873635 GO_REF:0000096 MGI:1202528 MGI:2448448 MGI:4834177 MGI:6201960 MGI:77543 NCBI chr 3:131,270,626...131,349,432
Ensembl chr 3:131,270,529...131,349,432 		JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IBA
IMP
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:1277343|PMID:9671738)
(MGI:1347713|PMID:10559207)		 GO_Central
MGI
UniProt		 PMID:9671738 PMID:10559207 PMID:21873635 GO_REF:0000096 MGI:1277343 MGI:1347713 MGI:4834177 MGI:6201960 NCBI chr19:32,573,072...32,644,587
Ensembl chr19:32,573,190...32,644,587 		JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
G Acly ATP citrate lyase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:100,367,178...100,418,826
Ensembl chr11:100,367,179...100,418,826 		JBrowse link
G Acss1 acyl-CoA synthetase short-chain family member 1 acts_upstream_of_or_within
involved_in		 IDA
IBA
ISO		 (MGI:2151932|PMID:11150295)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11150295 PMID:21873635 GO_REF:0000096 MGI:2151932 MGI:4834177 MGI:6201960 NCBI chr 2:150,460,031...150,510,160
Ensembl chr 2:150,460,025...150,510,420 		JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (MGI:2151932|PMID:11150295)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11150295 PMID:21873635 MGI:2151932 MGI:6201960 NCBI chr 2:155,359,963...155,404,663
Ensembl chr 2:155,359,868...155,427,644 		JBrowse link
G Dip2a disco interacting protein 2 homolog A involved_in IDA (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chr10:76,098,581...76,181,194
Ensembl chr10:76,095,263...76,181,125 		JBrowse link
G Mlycd malonyl-CoA decarboxylase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
RGD
GO_Central		 PMID:17316539 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 RGD:1600790 NCBI chr 8:120,121,591...120,148,577
Ensembl chr 8:120,121,617...120,137,841 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:119,275,724...119,279,673
Ensembl chr 4:119,275,727...119,279,617 		JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:150,460,031...150,510,160
Ensembl chr 2:150,460,025...150,510,420 		JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP
IC		 (MGI:6201960|PMID:21873635)
(MGI:5819147|PMID:27621431)
(MGI:3719938|PMID:17314311)
(MGI:2388500|PMID:12108679)		 RGD
GO_Central
MGI		 PMID:7487891 PMID:12108679 PMID:17314311 PMID:21873635 PMID:27621431 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:2388500 MGI:3719938 MGI:4417868 MGI:4834177 MGI:5819147 MGI:6201960 RGD:1599112 NCBI chr 9:50,545,933...50,571,080
Ensembl chr 9:50,545,933...50,571,080 		JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within
involved_in		 ISO
IC
IMP		 (MGI:1101694|PMID:9405644)
(MGI:3719938|PMID:17314311)
(MGI:5819147|PMID:27621431)		 RGD
MGI		 PMID:7487891 PMID:9405644 PMID:17314311 PMID:27621431 GO_REF:0000008 GO_REF:0000096 MGI:1101694 MGI:2154458 MGI:3719938 MGI:4417868 MGI:5819147 RGD:1599112 NCBI chr12:31,381,561...31,401,470
Ensembl chr12:31,381,276...31,401,452 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 acts_upstream_of_or_within
involved_in		 IMP
IC		 (MGI:5428352|PMID:22628558)
(MGI:5428353|PMID:22628554)		 MGI PMID:22628554 PMID:22628558 MGI:5428352 MGI:5428353 NCBI chr17:8,502,590...8,516,499
Ensembl chr17:8,501,736...8,516,493 		JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 acts_upstream_of_or_within
involved_in		 IMP (MGI:5428352|PMID:22628558)
(MGI:5576400|PMID:24910426)		 MGI PMID:22628558 PMID:24910426 MGI:5428352 MGI:5576400 NCBI chr 1:165,288,829...165,308,787
Ensembl chr 1:165,288,206...165,308,783 		JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:3817854|PMID:18586888)		 MGI
GO_Central
RGD		 PMID:7487891 PMID:18586888 PMID:21873635 GO_REF:0000096 MGI:3817854 MGI:4834177 MGI:6201960 RGD:1599112 NCBI chr  X:158,905,215...158,921,426
Ensembl chr  X:158,905,205...158,921,409 		JBrowse link
G Pdha2 pyruvate dehydrogenase E1 alpha 2 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:6201960|PMID:21873635) RGD
GO_Central
MGI		 PMID:7487891 PMID:21873635 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:4417868 MGI:6201960 RGD:1599112 NCBI chr 3:140,915,765...140,918,116
Ensembl chr 3:140,915,765...140,918,116 		JBrowse link
G Pdhb pyruvate dehydrogenase (lipoamide) beta involved_in
acts_upstream_of_or_within		 IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:7487891 PMID:21873635 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:4417868 MGI:6201960 RGD:1599112 NCBI chr14:14,296,470...14,303,782
Ensembl chr14:14,296,748...14,303,777 		JBrowse link
G Pdhx pyruvate dehydrogenase complex, component X acts_upstream_of_or_within
involved_in		 ISO (PMID:24534072) MGI
ComplexPortal		 PMID:24534072 GO_REF:0000008 MGI:2154458 NCBI chr 2:102,851,400...102,903,858
Ensembl chr 2:102,851,420...102,903,858 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO (MGI:7367108|PMID:8726225) MGI PMID:8726225 MGI:7367108 NCBI chr11:52,251,905...52,280,224
Ensembl chr11:52,251,687...52,280,224 		JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
G Acot7 acyl-CoA thioesterase 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:152,258,872...152,356,312
Ensembl chr 4:152,262,591...152,356,312 		JBrowse link
G Coasy Coenzyme A synthase acts_upstream_of_or_within
involved_in		 ISO
IDA
IBA		 (MGI:3029834|PMID:11994049)
(MGI:2181228|PMID:11980892)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:11980892 PMID:11994049 PMID:21873635 GO_REF:0000096 MGI:2181228 MGI:3029834 MGI:4834177 MGI:6201960 NCBI chr11:100,973,391...100,977,445
Ensembl chr11:100,973,391...100,977,445 		JBrowse link
G Dcakd dephospho-CoA kinase domain containing involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:102,884,873...102,919,107
Ensembl chr11:102,884,873...102,919,159 		JBrowse link
G Pank1 pantothenate kinase 1 acts_upstream_of_or_within
involved_in		 IDA
IMP
TAS
IBA		 (MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)
(MGI:2182911|PMID:12095680)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:12095680 PMID:16040613 PMID:20559429 PMID:21873635 PMID:22815849 MGI:2182911 MGI:3607004 MGI:4461354 MGI:5446555 MGI:6201960 NCBI chr19:34,784,335...34,862,420
Ensembl chr19:34,784,340...34,856,855 		JBrowse link
G Pank2 pantothenate kinase 2 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5446555|PMID:22815849)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:22815849 MGI:5446555 MGI:6201960 NCBI chr 2:131,103,928...131,141,108
Ensembl chr 2:131,104,415...131,141,108 		JBrowse link
G Pank3 pantothenate kinase 3 acts_upstream_of_or_within
involved_in		 IDA
IBA
ISO		 (MGI:3607004|PMID:16040613)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16040613 PMID:21873635 GO_REF:0000096 MGI:3607004 MGI:4834177 MGI:6201960 NCBI chr11:35,660,322...35,682,112
Ensembl chr11:35,660,311...35,682,112 		JBrowse link
G Pank4 pantothenate kinase 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:155,048,580...155,065,395
Ensembl chr 4:155,048,580...155,065,395 		JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:57,292,378...57,347,440
Ensembl chr 9:57,292,378...57,347,407 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:119,275,724...119,279,673
Ensembl chr 4:119,275,727...119,279,617 		JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-Coenzyme A dehydrogenase involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:6895440 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:1598697 NCBI chr 8:85,613,016...85,629,378
Ensembl chr 8:85,613,022...85,620,550 		JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long-chain family member 1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr 8:46,924,074...46,989,088
Ensembl chr 8:46,924,074...46,989,088 		JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 involved_in ISO RGD
MGI		 PMID:16466685 GO_REF:0000096 MGI:4417868 RGD:2312800 NCBI chr  X:141,100,989...141,173,792
Ensembl chr  X:141,100,989...141,173,531 		JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) RGD
GO_Central
MGI		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr19:55,240,298...55,285,060
Ensembl chr19:55,240,370...55,286,152 		JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:16466685 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2312800 NCBI chr11:54,194,580...54,255,582
Ensembl chr11:54,194,624...54,255,582 		JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acacb acetyl-Coenzyme A carboxylase beta involved_in IMP (MGI:3804564|PMID:18487439) UniProt PMID:18487439 MGI:3804564 NCBI chr 5:114,284,748...114,388,822
Ensembl chr 5:114,284,596...114,388,822 		JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:53,491,822...53,521,650
Ensembl chr 9:53,491,822...53,521,682 		JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase, isoenzyme 1 involved_in IMP (MGI:5487511|PMID:22195962) UniProt PMID:22195962 MGI:5487511 NCBI chr 2:71,703,398...71,734,202
Ensembl chr 2:71,703,568...71,734,202 		JBrowse link
G Pdk2 pyruvate dehydrogenase kinase, isoenzyme 2 involved_in IMP (MGI:5428826|PMID:22360721) UniProt PMID:22360721 MGI:5428826 NCBI chr11:94,917,084...94,932,197
Ensembl chr11:94,917,084...94,932,180 		JBrowse link
G Pdk3 pyruvate dehydrogenase kinase, isoenzyme 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:92,798,923...92,875,756
Ensembl chr  X:92,808,213...92,875,807 		JBrowse link
G Pdk4 pyruvate dehydrogenase kinase, isoenzyme 4 involved_in
acts_upstream_of_or_within		 IMP
ISO
TAS		 (MGI:3692363|PMID:16606348)
(MGI:1349328|PMID:10548532)		 UniProt
MGI		 PMID:10548532 PMID:16606348 GO_REF:0000096 MGI:1349328 MGI:3692363 MGI:4834177 NCBI chr 6:5,483,351...5,496,278
Ensembl chr 6:5,483,351...5,496,309 		JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein, alpha acts_upstream_of_or_within IMP
IDA		 (MGI:3628986|PMID:16636270)
(MGI:3629421|PMID:16734431)		 MGI PMID:16636270 PMID:16734431 MGI:3628986 MGI:3629421 NCBI chr 6:60,708,557...60,806,839
Ensembl chr 6:60,708,559...60,806,839 		JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-Coenzyme A mutase involved_in IDA (MGI:64406|PMID:7904153) MGI PMID:7904153 MGI:64406 NCBI chr17:41,245,576...41,272,880
Ensembl chr17:41,245,576...41,272,879 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      small molecule metabolic process 1899
        nucleobase-containing small molecule metabolic process 581
          nucleoside phosphate metabolic process 520
            nucleoside bisphosphate metabolic process 115
              nucleoside bisphosphate biosynthetic process 38
                purine nucleoside bisphosphate biosynthetic process + 38
                ribonucleoside bisphosphate biosynthetic process + 38
Path 2
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      cellular metabolic process 7070
        cellular nitrogen compound metabolic process 3668
          nucleobase-containing compound metabolic process 2805
            nucleobase-containing small molecule metabolic process 581
              nucleoside phosphate metabolic process 520
                nucleoside phosphate biosynthetic process 280
                  nucleoside bisphosphate biosynthetic process 38
                    purine nucleoside bisphosphate biosynthetic process + 38
                    ribonucleoside bisphosphate biosynthetic process + 38
paths to the root