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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside bisphosphate metabolic process
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Accession:GO:0033865 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: nucleoside bisphosphate metabolism


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2448448|PMID:12414806) MGI
Ensembl
TreeGrafter
PMID:12414806 GO_REF:0000107 GO_REF:0000118 MGI:2448448 NCBI chrNW_004624830:1,582,240...1,636,349
Ensembl chrNW_004624830:1,577,681...1,636,476
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624791:13,789,539...13,866,551
Ensembl chrNW_004624791:13,789,584...13,866,543
JBrowse link
3'-phosphoadenosine 5'-phosphosulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bpnt1 3'(2'), 5'-bisphosphate nucleotidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624835:3,704,455...3,722,825
Ensembl chrNW_004624835:3,704,664...3,718,129
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:7830796) BHF-UCL PMID:7830796 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308
JBrowse link
G LOC101697399 sulfotransferase 1A1 involved_in ISO (PMID:12471039), (PMID:23207770) CAFA PMID:12471039 PMID:23207770 NCBI chrNW_004624782:13,079,596...13,094,149 JBrowse link
G LOC101724165 sulfotransferase 1C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:11,594,485...11,615,324
Ensembl chrNW_004624749:11,594,446...11,615,591
JBrowse link
G Sult2b1 sulfotransferase family 2B member 1 involved_in ISO (PMID:12923182) CAFA PMID:12923182 NCBI chrNW_004624832:5,268,000...5,290,888
Ensembl chrNW_004624832:5,267,900...5,290,991
JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
G Acly ATP citrate lyase involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624795:1,872,413...1,910,495
Ensembl chrNW_004624795:1,872,454...1,911,004
JBrowse link
G Acss1 acyl-CoA synthetase short chain family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151932|PMID:11150295) MGI
TreeGrafter
PMID:11150295 GO_REF:0000118 MGI:2151932 NCBI chrNW_004624939:384,003...431,485
Ensembl chrNW_004624939:394,884...435,098
JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151932|PMID:11150295) MGI
TreeGrafter
PMID:11150295 GO_REF:0000118 MGI:2151932 NCBI chrNW_004624842:4,470,551...4,523,174
Ensembl chrNW_004624842:4,471,360...4,522,849
JBrowse link
G Dip2a disco interacting protein 2 homolog A involved_in ISO (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chrNW_004624745:31,528,577...31,642,469
Ensembl chrNW_004624745:31,528,642...31,640,306
JBrowse link
G Mlycd malonyl-CoA decarboxylase involved_in ISO (PMID:10417274), (PMID:10455107), (PMID:9869665) UniProt
RGD
PMID:9869665 PMID:10417274 PMID:10455107 PMID:17316539 RGD:1600790 NCBI chrNW_004624746:3,604,773...3,619,790
Ensembl chrNW_004624746:3,604,773...3,619,775
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in ISO (PMID:29754768) UniProt PMID:29754768 NCBI chrNW_004624892:1,791,254...1,794,866
Ensembl chrNW_004624892:1,791,255...1,795,250
JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short chain family member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624939:384,003...431,485
Ensembl chrNW_004624939:394,884...435,098
JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase involved_in ISO
IEA
RGD
InterPro
Ensembl
TreeGrafter
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chrNW_004624784:7,181,550...7,216,779
Ensembl chrNW_004624784:7,181,671...7,214,751
JBrowse link
G Dld dihydrolipoamide dehydrogenase involved_in ISO
IEA
RGD
Ensembl
PMID:7487891 GO_REF:0000107 RGD:1599112 NCBI chrNW_004624739:21,842,897...21,873,334
Ensembl chrNW_004624739:21,846,733...21,873,700
JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5428352|PMID:22628558) MGI PMID:22628558 MGI:5428352 NCBI chrNW_004624785:12,876,942...12,892,417
Ensembl chrNW_004624785:12,877,077...12,891,914
JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 involved_in
acts_upstream_of_or_within
ISO (MGI:5428352|PMID:22628558)
(MGI:5576400|PMID:24910426)
MGI PMID:22628558 PMID:24910426 MGI:5428352 MGI:5576400 NCBI chrNW_004624826:5,919,317...5,936,785
Ensembl chrNW_004624826:5,915,490...5,936,779
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3817854|PMID:18586888) RGD
InterPro
MGI
Ensembl
TreeGrafter
PMID:7487891 PMID:18586888 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:3817854 RGD:1599112 NCBI chrNW_004624829:4,154,143...4,170,726
Ensembl chrNW_004624829:4,154,066...4,169,670
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 involved_in ISO
IEA
RGD
InterPro
TreeGrafter
PMID:7487891 GO_REF:0000002 GO_REF:0000118 RGD:1599112 NCBI chrNW_004624757:23,806,964...23,808,605 JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta involved_in ISO
IEA
RGD
InterPro
Ensembl
TreeGrafter
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chrNW_004624822:5,482,177...5,488,218
Ensembl chrNW_004624822:5,482,173...5,488,287
JBrowse link
G Pdhx pyruvate dehydrogenase complex component X involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624767:12,178,505...12,257,457 JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
G Nudt7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2137102|PMID:11415433) MGI
Ensembl
PMID:11415433 GO_REF:0000107 MGI:2137102 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
acetyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 ISO RGD PMID:16476568 RGD:2317620 NCBI chrNW_004624778:13,307,236...13,336,347
Ensembl chrNW_004624778:13,307,094...13,336,120
JBrowse link
G Acaca acetyl-CoA carboxylase alpha involved_in ISO (MGI:4840155|PMID:20952656) UniProt PMID:20952656 MGI:4840155 NCBI chrNW_004624871:4,103,014...4,364,690
Ensembl chrNW_004624871:4,105,067...4,412,325
JBrowse link
G Acacb acetyl-CoA carboxylase beta involved_in ISO (PMID:20952656) UniProt PMID:20952656 NCBI chrNW_004624747:12,287,817...12,426,340
Ensembl chrNW_004624747:12,307,541...12,424,897
JBrowse link
G Acly ATP citrate lyase ISO RGD PMID:18062843 RGD:2317315 NCBI chrNW_004624795:1,872,413...1,910,495
Ensembl chrNW_004624795:1,872,454...1,911,004
JBrowse link
G Acot12 acyl-CoA thioesterase 12 acts_upstream_of_or_within ISO (MGI:2450440|PMID:12545200) MGI PMID:12545200 MGI:2450440 NCBI chrNW_004624743:1,849,498...1,883,250
Ensembl chrNW_004624743:1,851,068...1,883,255
JBrowse link
G Fasn fatty acid synthase ISO RGD PMID:18062843 RGD:2317315 NCBI chrNW_004624801:10,910,022...10,926,505
Ensembl chrNW_004624801:10,909,647...10,927,547
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:11,826,793...11,847,111
Ensembl chrNW_004624759:11,826,876...11,847,111
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:15,432,612...15,464,343
Ensembl chrNW_004624772:15,432,198...15,467,797
JBrowse link
acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase short/branched chain acts_upstream_of_or_within ISO PMID:8660691 MGI PMID:8660691 RGD:631739 NCBI chrNW_004624737:23,949,008...23,999,544
Ensembl chrNW_004624737:23,951,463...23,999,500
JBrowse link
G Acot11 acyl-CoA thioesterase 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624934:14,853...75,883
Ensembl chrNW_004624934:14,896...55,276
JBrowse link
G Acot12 acyl-CoA thioesterase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:1,849,498...1,883,250
Ensembl chrNW_004624743:1,851,068...1,883,255
JBrowse link
G Acot6 acyl-CoA thioesterase 6 involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624734:27,901,129...27,908,976 JBrowse link
G Acot9 acyl-CoA thioesterase 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624897:125,348...155,557
Ensembl chrNW_004624897:125,348...155,621
JBrowse link
G Acsm1 acyl-CoA synthetase medium chain family member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:3,804,627...3,846,949
Ensembl chrNW_004624782:3,809,421...3,849,777
JBrowse link
G Acsm3 acyl-CoA synthetase medium chain family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:6,930,461...6,958,867
Ensembl chrNW_004624782:6,930,505...6,959,069
JBrowse link
G Acsm4 acyl-CoA synthetase medium chain family member 4 involved_in ISO
IEA
RGD
TreeGrafter
PMID:12709059 GO_REF:0000118 RGD:1299602 NCBI chrNW_004624782:6,862,210...6,885,556
Ensembl chrNW_004624782:6,862,648...6,885,450
JBrowse link
G Acsm5 acyl-CoA synthetase medium chain family member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:3,708,941...3,729,359
Ensembl chrNW_004624782:3,709,020...3,731,601
JBrowse link
G Gcdh glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chrNW_004624901:474,836...479,674
Ensembl chrNW_004624901:475,073...479,292
JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619815|PMID:15878874) MGI
Ensembl
PMID:15878874 GO_REF:0000107 MGI:3619815 NCBI chrNW_004624737:34,198,773...34,268,815
Ensembl chrNW_004624737:34,198,518...34,265,192
JBrowse link
G Gpat4 glycerol-3-phosphate acyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:1,643,030...1,691,517
Ensembl chrNW_004624780:1,643,030...1,691,496
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO RGD PMID:2573547 RGD:1599519 NCBI chrNW_004624764:8,349,288...8,363,178
Ensembl chrNW_004624764:8,348,724...8,363,220
JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO RGD PMID:15870076 RGD:1625002 NCBI chrNW_004624790:10,039,344...10,065,167
Ensembl chrNW_004624790:10,038,999...10,100,649
JBrowse link
G LOC101712192 acyl-coenzyme A synthetase ACSM2A, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:3,736,644...3,767,028
Ensembl chrNW_004624782:3,736,246...3,769,174
JBrowse link
G LOC101716142 bile acid-CoA:amino acid N-acyltransferase involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624758:10,035,428...10,050,486
Ensembl chrNW_004624758:10,035,444...10,050,939
JBrowse link
G LOC101723404 troponin C, skeletal muscle involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624790:8,720,494...8,751,730
Ensembl chrNW_004624790:8,720,508...8,751,721
JBrowse link
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial involved_in ISO (PMID:15668256) HGNC-UCL PMID:15668256 NCBI chrNW_004624788:3,701,751...3,721,743
Ensembl chrNW_004624788:3,714,360...3,718,678
JBrowse link
benzoyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101711412 glycine N-acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624864:1,578,670...1,593,898
Ensembl chrNW_004624864:1,583,266...1,592,089
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004624818:5,048,410...5,142,135
Ensembl chrNW_004624818:5,065,995...5,142,558
JBrowse link
G Coasy Coenzyme A synthase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2181228|PMID:11980892) Ensembl
InterPro
TreeGrafter
MGI
PMID:11980892 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:2181228 NCBI chrNW_004624795:1,543,383...1,547,002
Ensembl chrNW_004624795:1,543,383...1,547,627
JBrowse link
G Dcakd dephospho-CoA kinase domain containing involved_in IEA TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624795:311,520...333,734
Ensembl chrNW_004624795:311,394...336,627
JBrowse link
G Pank1 pantothenate kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)
MGI
InterPro
TreeGrafter
PMID:16040613 PMID:20559429 PMID:22815849 GO_REF:0000002 GO_REF:0000118 MGI:3607004 MGI:4461354 MGI:5446555 NCBI chrNW_004624737:474,996...544,766
Ensembl chrNW_004624737:471,485...544,545
JBrowse link
G Pank2 pantothenate kinase 2 involved_in
acts_upstream_of_or_within
ISO (MGI:5446555|PMID:22815849)
(MGI:6367849|PMID:24316510)
MGI PMID:22815849 PMID:24316510 MGI:5446555 MGI:6367849 NCBI chrNW_004624741:4,966,136...5,025,465
Ensembl chrNW_004624741:4,966,260...5,007,207
JBrowse link
G Pank3 pantothenate kinase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607004|PMID:16040613) MGI
InterPro
TreeGrafter
PMID:16040613 GO_REF:0000002 GO_REF:0000118 MGI:3607004 NCBI chrNW_004624733:21,382,404...21,401,815
Ensembl chrNW_004624733:21,382,414...21,400,396
JBrowse link
G Pank4 pantothenate kinase 4 (inactive) involved_in IEA TreeGrafter
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624818:7,519,347...7,532,116
Ensembl chrNW_004624818:7,519,382...7,532,108
JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase involved_in IEA TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624894:174,867...187,667
Ensembl chrNW_004624894:174,870...187,884
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase involved_in IEA TreeGrafter
UniProt
GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004624892:1,791,254...1,794,866
Ensembl chrNW_004624892:1,791,255...1,795,250
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:4,844,472...4,889,006
Ensembl chrNW_004624754:4,844,552...4,886,709
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2137102|PMID:11415433) MGI
Ensembl
TreeGrafter
PMID:11415433 GO_REF:0000107 GO_REF:0000118 MGI:2137102 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
G Vnn1 vanin 1 involved_in ISO (MGI:1926589|PMID:11042271) MGI PMID:11042271 MGI:1926589 NCBI chrNW_004624753:6,869,269...6,892,217
Ensembl chrNW_004624753:6,867,953...6,892,186
JBrowse link
coenzyme A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
G Crot carnitine O-octanoyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:34,696,516...34,738,143
Ensembl chrNW_004624739:34,696,511...34,730,419
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624951:681,559...711,476
Ensembl chrNW_004624951:682,178...711,474
JBrowse link
G Mccc2 methylcrotonyl-CoA carboxylase subunit 2 ISO RGD PMID:3995077 RGD:2316862 NCBI chrNW_004624905:645,782...709,611
Ensembl chrNW_004624905:645,715...712,364
JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-CoA dehydrogenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:6895440 GO_REF:0000118 RGD:1598697 NCBI chrNW_004624901:474,836...479,674
Ensembl chrNW_004624901:475,073...479,292
JBrowse link
fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fitm2 fat storage inducing transmembrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:10,150,070...10,156,194
Ensembl chrNW_004624790:10,149,601...10,153,411
JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate diphosphate decarboxylase involved_in ISO
IEA
RGD
UniProt
InterPro
TreeGrafter
PMID:197206 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2316852 NCBI chrNW_004624746:905,919...911,591
Ensembl chrNW_004624746:905,757...911,591
JBrowse link
G Mvk mevalonate kinase involved_in ISO
IEA
RGD
UniProt
TreeGrafter
PMID:197206 GO_REF:0000041 GO_REF:0000118 RGD:2316852 NCBI chrNW_004624747:10,837,743...10,858,758
Ensembl chrNW_004624747:10,834,306...10,857,595
JBrowse link
G Pmvk phosphomevalonate kinase involved_in ISO
IEA
RGD
UniProt
TreeGrafter
PMID:197206 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2316852 NCBI chrNW_004624885:2,544,136...2,552,591
Ensembl chrNW_004624885:2,543,862...2,553,237
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:1,594,988...1,615,210
Ensembl chrNW_004624786:1,600,395...1,616,290
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624734:26,802,902...26,824,632
Ensembl chrNW_004624734:26,803,344...26,825,272
JBrowse link
L-methylmalonyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcee methylmalonyl-CoA epimerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:1,973,167...1,989,269
Ensembl chrNW_004624768:1,972,545...1,989,269
JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004624769:15,503,757...15,584,741
Ensembl chrNW_004624769:15,503,757...15,584,777
JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004624803:6,272,954...6,372,815
Ensembl chrNW_004624803:6,336,964...6,372,815
JBrowse link
G Acsl5 acyl-CoA synthetase long chain family member 5 involved_in ISO
IEA
RGD
TreeGrafter
PMID:16466685 GO_REF:0000118 RGD:2312800 NCBI chrNW_004624737:34,038,610...34,091,579
Ensembl chrNW_004624737:34,038,518...34,091,661
JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chrNW_004624733:40,105,795...40,157,108
Ensembl chrNW_004624733:40,105,806...40,160,221
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624892:2,679,872...2,684,499
Ensembl chrNW_004624892:2,675,421...2,684,622
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624831:1,646,319...1,649,435
Ensembl chrNW_004624831:1,646,240...1,649,740
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624819:6,572,263...6,601,991
Ensembl chrNW_004624819:6,572,161...6,602,072
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624850:523,059...598,135
Ensembl chrNW_004624850:522,018...597,469
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624838:4,469,321...4,593,919
Ensembl chrNW_004624838:4,468,192...4,593,556
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624815:9,154,070...9,247,251
Ensembl chrNW_004624815:9,190,454...9,247,746
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004624818:5,048,410...5,142,135
Ensembl chrNW_004624818:5,065,995...5,142,558
JBrowse link
long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long chain family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:2,323,939...2,387,213
Ensembl chrNW_004624823:2,324,345...2,381,420
JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:6,272,954...6,372,815
Ensembl chrNW_004624803:6,336,964...6,372,815
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in ISO (MGI:2151970|PMID:11481335) BHF-UCL PMID:11481335 MGI:2151970 NCBI chrNW_004624735:12,525,120...12,535,436
Ensembl chrNW_004624735:12,525,284...12,535,193
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 involved_in ISO (PMID:11481335)
(MGI:2151970|PMID:11481335)
BHF-UCL PMID:11481335 MGI:2151970 NCBI chrNW_004624817:1,386,876...1,418,129
Ensembl chrNW_004624817:1,386,764...1,418,300
JBrowse link
G Far1 fatty acyl-CoA reductase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:5,622,194...5,684,076
Ensembl chrNW_004624766:5,623,625...5,682,464
JBrowse link
G Far2 fatty acyl-CoA reductase 2 involved_in IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624778:6,456,396...6,642,551
Ensembl chrNW_004624778:6,456,008...6,493,697
JBrowse link
G LOC101705063 acyl-coenzyme A thioesterase THEM4-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:1,609,416...1,619,076 JBrowse link
G Them5 thioesterase superfamily member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:19,523,721...19,530,019
Ensembl chrNW_004624772:19,523,526...19,530,041
JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acacb acetyl-CoA carboxylase beta involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004624747:12,287,817...12,426,340
Ensembl chrNW_004624747:12,307,541...12,424,897
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase involved_in ISO (PMID:10417274), (PMID:10455107), (PMID:15003260)
(MGI:5501374|PMID:23746352)
UniProt PMID:10417274 PMID:10455107 PMID:15003260 PMID:23746352 MGI:5501374 NCBI chrNW_004624746:3,604,773...3,619,790
Ensembl chrNW_004624746:3,604,773...3,619,775
JBrowse link
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004624818:5,048,410...5,142,135
Ensembl chrNW_004624818:5,065,995...5,142,558
JBrowse link
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
medium-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:2,126,124...2,204,966
Ensembl chrNW_004624733:2,124,825...2,205,378
JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
propionyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
purine nucleoside bisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coasy Coenzyme A synthase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624795:1,543,383...1,547,002
Ensembl chrNW_004624795:1,543,383...1,547,627
JBrowse link
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624830:1,582,240...1,636,349
Ensembl chrNW_004624830:1,577,681...1,636,476
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624791:13,789,539...13,866,551
Ensembl chrNW_004624791:13,789,584...13,866,543
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 involved_in ISO (MGI:5487511|PMID:22195962) UniProt PMID:22195962 MGI:5487511 NCBI chrNW_004624787:9,917,366...9,956,393
Ensembl chrNW_004624787:9,917,309...9,959,875
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 involved_in ISO (MGI:5428826|PMID:22360721) UniProt PMID:22360721 MGI:5428826 NCBI chrNW_004624795:6,096,164...6,107,271
Ensembl chrNW_004624795:6,095,948...6,107,271
JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 involved_in ISO (PMID:22865452) UniProt PMID:22865452 NCBI chrNW_004624897:759,367...833,947 JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:2,258,279...2,270,540
Ensembl chrNW_004624813:2,258,279...2,270,824
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha acts_upstream_of_or_within ISO (MGI:3628986|PMID:16636270)
(MGI:3629421|PMID:16734431)
MGI PMID:16636270 PMID:16734431 MGI:3628986 MGI:3629421 NCBI chrNW_004624757:17,393,046...17,528,783
Ensembl chrNW_004624757:17,392,998...17,528,320
JBrowse link
ribonucleoside bisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coasy Coenzyme A synthase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624795:1,543,383...1,547,002
Ensembl chrNW_004624795:1,543,383...1,547,627
JBrowse link
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624830:1,582,240...1,636,349
Ensembl chrNW_004624830:1,577,681...1,636,476
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624791:13,789,539...13,866,551
Ensembl chrNW_004624791:13,789,584...13,866,543
JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmut methylmalonyl-CoA mutase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624799:14,404,873...14,433,803
Ensembl chrNW_004624799:14,404,662...14,433,632
JBrowse link
succinyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chrNW_004624794:7,624,932...7,637,070
Ensembl chrNW_004624794:7,625,032...7,637,185
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830
JBrowse link
succinyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlst dihydrolipoamide S-succinyltransferase involved_in ISO (PMID:10806400) UniProt PMID:10806400 NCBI chrNW_004624734:26,802,902...26,824,632
Ensembl chrNW_004624734:26,803,344...26,825,272
JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (PMID:24495017), (PMID:29211711) RGD
UniProt
PMID:9712727 PMID:24495017 PMID:29211711 RGD:2306877 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417
JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta involved_in ISO
IEA
RGD
TreeGrafter
PMID:17403370 GO_REF:0000118 RGD:2306915 NCBI chrNW_004624748:6,848,785...6,923,831
Ensembl chrNW_004624748:6,848,804...6,923,478
JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO RGD PMID:7430155 PMID:17403370 RGD:2306879 RGD:2306915 NCBI chrNW_004624749:18,552,154...18,580,676
Ensembl chrNW_004624749:18,551,188...18,583,183
JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta involved_in ISO
IEA
RGD
InterPro
TreeGrafter
PMID:7430155 PMID:17403370 GO_REF:0000002 GO_REF:0000118 RGD:2306879 RGD:2306915 NCBI chrNW_004624773:1,816,924...2,087,384
Ensembl chrNW_004624773:1,818,374...2,087,331
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7236232 GO_REF:0000118 RGD:2303721 NCBI chrNW_004624848:2,380,827...2,395,807
Ensembl chrNW_004624848:2,380,670...2,396,314
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in ISO (PMID:23671276) UniProt PMID:23671276 NCBI chrNW_004624946:421,113...439,961
Ensembl chrNW_004624946:421,132...440,075
JBrowse link
very long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:2,126,124...2,204,966
Ensembl chrNW_004624733:2,124,825...2,205,378
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15060
    metabolic process 9240
      organic substance metabolic process 8573
        organophosphate metabolic process 876
          nucleoside phosphate metabolic process 492
            nucleoside bisphosphate metabolic process 101
              nucleoside bisphosphate biosynthetic process + 44
              nucleoside bisphosphate catabolic process + 8
              purine nucleoside bisphosphate metabolic process + 101
              ribonucleoside bisphosphate metabolic process + 101
Path 2
Term Annotations click to browse term
  biological_process 15060
    metabolic process 9240
      nitrogen compound metabolic process 7406
        cellular nitrogen compound metabolic process 4955
          nucleobase-containing compound metabolic process 4387
            nucleobase-containing small molecule metabolic process 545
              nucleoside phosphate metabolic process 492
                nucleoside bisphosphate metabolic process 101
                  nucleoside bisphosphate biosynthetic process + 44
                  nucleoside bisphosphate catabolic process + 8
                  purine nucleoside bisphosphate metabolic process + 101
                  ribonucleoside bisphosphate metabolic process + 101
paths to the root