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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside bisphosphate metabolic process
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Accession:GO:0033865 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: nucleoside bisphosphate metabolism



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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2448448|PMID:12414806) MGI
TreeGrafter
Ensembl
PMID:12414806 GO_REF:0000107 GO_REF:0000118 MGI:2448448 NCBI chr 4:100,119,540...100,225,575
Ensembl chr 4:110,692,601...110,798,619
JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr10:84,383,936...84,471,745
Ensembl chr10:87,890,631...87,977,839
JBrowse link
3'-phosphoadenosine 5'-phosphosulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:195,629,262...195,663,144
Ensembl chr 1:200,667,016...200,699,790
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644
JBrowse link
G LOC100973465 sulfotransferase 1B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:54,478,985...54,513,877
Ensembl chr 4:60,815,445...60,849,516
JBrowse link
G LOC100979196 sulfotransferase 1A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:12,698,447...12,703,949 JBrowse link
G LOC100987365 sulfotransferase 1C3-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:94,283,070...94,322,249
Ensembl chr2A:109,407,992...109,549,194
JBrowse link
G LOC100992144 sulfotransferase 1A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:29,068,659...29,077,360 JBrowse link
G LOC117974341 sulfotransferase 1A1-like involved_in IEA Ensembl GO_REF:0000107
G SULT1A1 sulfotransferase family 1A member 1 involved_in IEA Ensembl GO_REF:0000107
G SULT1A3 sulfotransferase family 1A member 3 involved_in IEA Ensembl GO_REF:0000107
G SULT1C4 sulfotransferase family 1C member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:94,508,492...94,519,963
Ensembl chr2A:109,572,466...109,622,211
JBrowse link
G SULT1E1 sulfotransferase family 1E member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:54,377,681...54,396,619
Ensembl chr 4:60,713,392...60,733,229
JBrowse link
G SULT2A1 sulfotransferase family 2A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,864,747...44,880,688
Ensembl chr19:53,517,248...53,532,573
JBrowse link
G SULT2B1 sulfotransferase family 2B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,576,770...45,601,839
Ensembl chr19:54,146,574...54,192,407
JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G ACLY ATP citrate lyase involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:15,385,335...15,447,269
Ensembl chr17:15,615,994...15,664,800
JBrowse link
G ACSS1 acyl-CoA synthetase short chain family member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151932|PMID:11150295) MGI
TreeGrafter
Ensembl
PMID:11150295 GO_REF:0000107 GO_REF:0000118 MGI:2151932 NCBI chr20:24,946,629...25,001,311
Ensembl chr20:25,293,511...25,349,017
JBrowse link
G ACSS2 acyl-CoA synthetase short chain family member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151932|PMID:11150295) MGI
TreeGrafter
PMID:11150295 GO_REF:0000118 MGI:2151932 NCBI chr20:31,205,104...31,256,263
Ensembl chr20:32,329,721...32,380,526
JBrowse link
G DIP2A disco interacting protein 2 homolog A involved_in ISO (MGI:6478983|PMID:30672040) UniProt PMID:30672040 MGI:6478983 NCBI chr21:32,921,019...33,034,988
Ensembl chr21:46,060,713...46,168,885
JBrowse link
G MLYCD malonyl-CoA decarboxylase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:17316539 GO_REF:0000107 GO_REF:0000118 RGD:1600790 NCBI chr16:64,520,860...64,537,955
Ensembl chr16:83,912,793...83,929,162
JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,756,403...41,773,430
Ensembl chr 1:43,136,720...43,140,620
JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSS1 acyl-CoA synthetase short chain family member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:24,946,629...25,001,311
Ensembl chr20:25,293,511...25,349,017
JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLAT dihydrolipoamide S-acetyltransferase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chr11:106,910,857...106,950,851
Ensembl chr11:110,756,001...110,792,795
JBrowse link
G DLD dihydrolipoamide dehydrogenase involved_in ISO
IEA
RGD
Ensembl
PMID:7487891 GO_REF:0000107 RGD:1599112 NCBI chr 7:99,872,020...99,901,884
Ensembl chr 7:112,593,934...112,623,629
JBrowse link
G MPC1 mitochondrial pyruvate carrier 1 involved_in
acts_upstream_of_or_within
ISO (MGI:5428352|PMID:22628558) MGI PMID:22628558 MGI:5428352 NCBI chr 6:164,331,604...164,349,747 JBrowse link
G MPC2 mitochondrial pyruvate carrier 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5576400|PMID:24910426)
(MGI:5428352|PMID:22628558)
MGI
Ensembl
PMID:22628558 PMID:24910426 GO_REF:0000107 MGI:5428352 MGI:5576400 NCBI chr 1:143,406,611...143,424,508
Ensembl chr 1:147,132,213...147,151,648
JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3817854|PMID:18586888) RGD
TreeGrafter
Ensembl
MGI
InterPro
PMID:7487891 PMID:18586888 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:3817854 RGD:1599112 NCBI chr  X:11,967,944...11,985,837
Ensembl chr  X:19,330,508...19,348,443
JBrowse link
G PDHA2 pyruvate dehydrogenase E1 subunit alpha 2 involved_in ISO
IEA
RGD
TreeGrafter
GOC
PMID:7487891 GO_REF:0000108 GO_REF:0000118 RGD:1599112 NCBI chr 4:88,213,492...88,216,451
Ensembl chr 4:98,883,109...98,884,853
JBrowse link
G PDHB pyruvate dehydrogenase E1 subunit beta involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
InterPro
PMID:7487891 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599112 NCBI chr 3:58,359,753...58,366,094
Ensembl chr 3:59,776,618...59,782,411
JBrowse link
G PDHX pyruvate dehydrogenase complex component X involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr11:34,889,242...34,968,886
Ensembl chr11:34,764,450...34,844,166
JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G NUDT7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO (MGI:2137102|PMID:11415433)
(MGI:6157214|PMID:29378847), (MGI:6450264|PMID:18799520)
MGI
UniProt
PMID:11415433 PMID:18799520 PMID:29378847 MGI:2137102 MGI:6157214 MGI:6450264 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
acetyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAA2 acetyl-CoA acyltransferase 2 ISO RGD PMID:16476568 RGD:2317620 NCBI chr18:43,164,504...43,195,038
Ensembl chr18:46,512,374...46,542,737
JBrowse link
G ACACA acetyl-CoA carboxylase alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:19,670,114...19,998,903
Ensembl chr17:19,969,205...20,297,651
JBrowse link
G ACACB acetyl-CoA carboxylase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,692,668...106,845,490
Ensembl chr12:110,086,374...110,239,847
JBrowse link
G ACLY ATP citrate lyase ISO RGD PMID:18062843 RGD:2317315 NCBI chr17:15,385,335...15,447,269
Ensembl chr17:15,615,994...15,664,800
JBrowse link
G ACOT12 acyl-CoA thioesterase 12 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450440|PMID:12545200) MGI
Ensembl
PMID:12545200 GO_REF:0000107 MGI:2450440 NCBI chr 5:33,885,302...33,950,075
Ensembl chr 5:34,196,504...34,260,254
JBrowse link
G CS citrate synthase ISO RGD PMID:818082 PMID:938457 PMID:5820645 RGD:2306824 RGD:2306825 RGD:2306828 NCBI chr12:32,614,982...32,643,719
Ensembl chr12:32,867,225...32,895,854
JBrowse link
G FASN fatty acid synthase ISO RGD PMID:18062843 RGD:2317315 NCBI chr17:76,483,108...76,503,148
Ensembl chr17:82,187,516...82,205,647
JBrowse link
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr 5:67,067,001...67,091,786
Ensembl chr 5:72,116,228...72,141,050
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:82,778,489...82,798,987
Ensembl chr 1:117,775,770...117,796,679
JBrowse link
acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADSB acyl-CoA dehydrogenase short/branched chain acts_upstream_of_or_within ISO PMID:8660691 MGI PMID:8660691 RGD:631739 NCBI chr10:119,565,913...119,612,092
Ensembl chr10:123,839,570...123,886,759
JBrowse link
G ACOT11 acyl-CoA thioesterase 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:53,823,059...53,884,249
Ensembl chr 1:55,411,806...55,496,661
JBrowse link
G ACOT12 acyl-CoA thioesterase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:33,885,302...33,950,075
Ensembl chr 5:34,196,504...34,260,254
JBrowse link
G ACOT2 acyl-CoA thioesterase 2 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:54,128,445...54,135,067 JBrowse link
G ACOT4 acyl-CoA thioesterase 4 involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:54,150,843...54,155,119
Ensembl chr14:73,008,909...73,012,561
JBrowse link
G ACOT6 acyl-CoA thioesterase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:54,171,652...54,179,322
Ensembl chr14:73,034,520...73,037,170
JBrowse link
G ACOT7 acyl-CoA thioesterase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:5,030,488...5,154,800 JBrowse link
G ACOT8 acyl-CoA thioesterase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2156286|PMID:11673457) MGI
TreeGrafter
InterPro
Ensembl
PMID:11673457 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:2156286 NCBI chr20:42,180,734...42,196,466
Ensembl chr20:43,268,264...43,283,989
JBrowse link
G ACOT9 acyl-CoA thioesterase 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:16,300,116...16,365,713
Ensembl chr  X:23,676,669...23,717,092
JBrowse link
G ACSM3 acyl-CoA synthetase medium chain family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:17,611,715...17,644,587
Ensembl chr16:20,796,425...20,829,315
JBrowse link
G ACSM4 acyl-CoA synthetase medium chain family member 4 involved_in ISO
IEA
RGD
TreeGrafter
PMID:12709059 GO_REF:0000118 RGD:1299602 NCBI chr12:7,448,372...7,474,634
Ensembl chr12:7,613,474...7,637,536
JBrowse link
G ACSM6 acyl-CoA synthetase medium chain family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:91,800,561...91,834,123
Ensembl chr10:95,309,060...95,341,767
JBrowse link
G BAAT bile acid-CoA:amino acid N-acyltransferase involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:72,568,002...72,593,179
Ensembl chr 9:100,563,040...100,586,189
JBrowse link
G GCDH glutaryl-CoA dehydrogenase ISO RGD PMID:6895440 RGD:1598697 NCBI chr19:12,452,779...12,461,757
Ensembl chr19:13,195,241...13,204,223
JBrowse link
G GPAM glycerol-3-phosphate acyltransferase, mitochondrial acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3619815|PMID:15878874) MGI
Ensembl
PMID:15878874 GO_REF:0000107 MGI:3619815 NCBI chr10:108,747,370...108,781,270
Ensembl chr10:112,186,744...112,246,549
JBrowse link
G GPAT4 glycerol-3-phosphate acyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:40,822,736...40,869,744
Ensembl chr 8:38,271,808...38,318,587
JBrowse link
G HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase ISO RGD PMID:2573547 RGD:1599519 NCBI chr 1:22,993,489...23,017,307
Ensembl chr 1:23,977,723...24,001,150
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha ISO RGD PMID:15870076 RGD:1625002 NCBI chr20:40,684,450...40,763,824
Ensembl chr20:41,779,034...41,856,536
JBrowse link
G LOC100978366 putative cytosolic acyl coenzyme A thioester hydrolase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:34,368,657...34,369,721 JBrowse link
G LOC100994985 acyl-coenzyme A synthetase ACSM2B, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:17,765,533...17,805,773 JBrowse link
G OXSM 3-oxoacyl-ACP synthase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:25,683,801...25,697,227
Ensembl chr 3:26,021,806...26,026,222
JBrowse link
benzoyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLYAT glycine-N-acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:53,963,676...53,985,965
Ensembl chr11:57,423,438...57,438,213
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6157214|PMID:29378847), (MGI:6450264|PMID:18799520) UniProt PMID:18799520 PMID:29378847 MGI:6157214 MGI:6450264 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G ACOT7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:5,030,488...5,154,800 JBrowse link
G COASY Coenzyme A synthase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2181228|PMID:11980892) MGI
TreeGrafter
InterPro
Ensembl
PMID:11980892 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:2181228 NCBI chr17:14,750,246...14,754,417
Ensembl chr17:14,973,662...14,977,797
JBrowse link
G DCAKD dephospho-CoA kinase domain containing involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr17:12,266,199...12,299,502
Ensembl chr17:12,440,194...12,473,099
JBrowse link
G PANK1 pantothenate kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607004|PMID:16040613)
(MGI:4461354|PMID:20559429), (MGI:5446555|PMID:22815849)
MGI
TreeGrafter
InterPro
PMID:16040613 PMID:20559429 PMID:22815849 GO_REF:0000002 GO_REF:0000118 MGI:3607004 MGI:4461354 MGI:5446555 NCBI chr10:86,302,702...86,428,635
Ensembl chr10:89,847,888...89,912,765
JBrowse link
G PANK2 pantothenate kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5446555|PMID:22815849) InterPro
TreeGrafter
MGI
Ensembl
PMID:22815849 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:5446555 NCBI chr20:3,924,054...3,959,393
Ensembl chr20:3,723,211...3,757,748
JBrowse link
G PANK3 pantothenate kinase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607004|PMID:16040613) MGI
TreeGrafter
Ensembl
InterPro
PMID:16040613 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:3607004 NCBI chr 5:163,913,842...163,944,939
Ensembl chr 5:170,685,413...170,709,211
JBrowse link
G PANK4 pantothenate kinase 4 (inactive) involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chr 1:1,238,821...1,259,139
Ensembl chr 1:2,378,116...2,395,738
JBrowse link
G PPCDC phosphopantothenoylcysteine decarboxylase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr15:53,963,001...54,001,550
Ensembl chr15:73,579,583...73,606,834
JBrowse link
G PPCS phosphopantothenoylcysteine synthetase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr 1:41,756,403...41,773,430
Ensembl chr 1:43,136,720...43,140,620
JBrowse link
G SGPL1 sphingosine-1-phosphate lyase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:67,286,349...67,351,574
Ensembl chr10:69,812,092...69,876,438
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100978332 pantetheinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:130,459,268...130,491,167
Ensembl chr 6:134,566,117...134,598,784
JBrowse link
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2137102|PMID:11415433) MGI
TreeGrafter
PMID:11415433 GO_REF:0000118 MGI:2137102 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
coenzyme A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G CROT carnitine O-octanoyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:79,339,498...79,393,676
Ensembl chr 7:92,989,868...93,043,832
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:39,936,630...39,961,519
Ensembl chr 5:40,548,919...40,573,785
JBrowse link
G MCCC2 methylcrotonyl-CoA carboxylase subunit 2 ISO RGD PMID:3995077 RGD:2316862 NCBI chr 5:43,650,993...43,724,877
Ensembl chr 5:44,298,650...44,369,106
JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCDH glutaryl-CoA dehydrogenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:6895440 GO_REF:0000118 RGD:1598697 NCBI chr19:12,452,779...12,461,757
Ensembl chr19:13,195,241...13,204,223
JBrowse link
fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FITM2 fat storage inducing transmembrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:40,633,898...40,642,300
Ensembl chr20:41,730,346...41,735,389
JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MVD mevalonate diphosphate decarboxylase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
InterPro
PMID:197206 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2316852 NCBI chr16:69,365,070...69,376,149
Ensembl chr16:89,025,572...89,036,964
JBrowse link
G MVK mevalonate kinase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:197206 GO_REF:0000041 GO_REF:0000118 RGD:2316852 NCBI chr12:107,150,477...107,173,978
Ensembl chr12:110,544,991...110,568,524
JBrowse link
G PMVK phosphomevalonate kinase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
PMID:197206 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2316852 NCBI chr 1:130,273,246...130,286,614
Ensembl chr 1:133,882,840...133,894,818
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr17:27,717,083...27,820,776
Ensembl chr17:28,225,831...28,240,210
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:114,084,792...114,155,558
Ensembl chr 7:126,769,655...126,840,346
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr14:55,433,358...55,455,876
Ensembl chr14:74,278,128...74,300,133
JBrowse link
L-methylmalonyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCEE methylmalonyl-CoA epimerase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr2A:71,154,176...71,176,679
Ensembl chr2A:72,656,860...72,677,401
JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL1 acyl-CoA synthetase long chain family member 1 ISO RGD PMID:16466685 RGD:2312800 NCBI chr 4:176,920,811...176,991,495
Ensembl chr 4:189,145,403...189,198,646
JBrowse link
G ACSL4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:16466685 RGD:2312800 NCBI chr  X:98,731,109...98,841,067
Ensembl chr  X:109,206,964...109,310,914
JBrowse link
G ACSL5 acyl-CoA synthetase long chain family member 5 involved_in ISO
IEA
RGD
TreeGrafter
PMID:16466685 GO_REF:0000118 RGD:2312800 NCBI chr10:108,965,559...109,019,240
Ensembl chr10:112,407,161...112,457,892
JBrowse link
G ACSL6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:16466685 RGD:2312800 NCBI chr 5:127,373,306...127,434,954
Ensembl chr 5:133,537,292...133,586,711
JBrowse link
G ELOVL1 ELOVL fatty acid elongase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:42,664,818...42,686,475
Ensembl chr 1:44,044,693...44,048,769
JBrowse link
G ELOVL3 ELOVL fatty acid elongase 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr10:98,788,505...98,833,146
Ensembl chr10:102,297,291...102,300,594
JBrowse link
G ELOVL4 ELOVL fatty acid elongase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:77,798,058...77,830,840
Ensembl chr 6:81,068,882...81,102,050
JBrowse link
G ELOVL5 ELOVL fatty acid elongase 5 involved_in IEA UniProt GO_REF:0000104 NCBI chr 6:52,822,038...52,902,122
Ensembl chr 6:54,451,887...54,485,878
JBrowse link
G ELOVL6 ELOVL fatty acid elongase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chr 4:102,545,815...102,695,536
Ensembl chr 4:113,110,466...113,260,444
JBrowse link
G ELOVL7 ELOVL fatty acid elongase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:53,156,518...53,248,839
Ensembl chr 5:54,853,330...54,888,930
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT2 acyl-CoA thioesterase 2 ISO RGD PMID:7744868 RGD:2315867 NCBI chr14:54,128,445...54,135,067 JBrowse link
G ACOT7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:5,030,488...5,154,800 JBrowse link
long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL3 acyl-CoA synthetase long chain family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:110,100,210...110,181,277
Ensembl chr2B:228,706,142...228,759,882
JBrowse link
G ACSL4 acyl-CoA synthetase long chain family member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:98,731,109...98,841,067
Ensembl chr  X:109,206,964...109,310,914
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155
JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,824,791...70,857,530
Ensembl chr11:74,126,169...74,158,854
JBrowse link
G FAR1 fatty acyl-CoA reductase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr11:13,774,530...13,838,195
Ensembl chr11:13,468,756...13,531,716
JBrowse link
G FAR2 fatty acyl-CoA reductase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr12:56,975,589...57,165,923
Ensembl chr12:59,599,063...59,676,543
JBrowse link
G THEM5 thioesterase superfamily member 5 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:127,205,721...127,212,112
Ensembl chr 1:130,849,815...130,856,523
JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACACA acetyl-CoA carboxylase alpha involved_in IEA UniProt GO_REF:0000041 NCBI chr17:19,670,114...19,998,903
Ensembl chr17:19,969,205...20,297,651
JBrowse link
G ACACB acetyl-CoA carboxylase beta involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr12:106,692,668...106,845,490
Ensembl chr12:110,086,374...110,239,847
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLYCD malonyl-CoA decarboxylase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr16:64,520,860...64,537,955
Ensembl chr16:83,912,793...83,929,162
JBrowse link
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:5,030,488...5,154,800 JBrowse link
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6157214|PMID:29378847), (MGI:6450264|PMID:18799520) UniProt PMID:18799520 PMID:29378847 MGI:6157214 MGI:6450264 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
medium-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSD17B4 hydroxysteroid 17-beta dehydrogenase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:114,842,892...114,928,559
Ensembl chr 5:120,628,605...120,713,860
JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
propionyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
purine nucleoside bisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COASY Coenzyme A synthase involved_in IEA UniProt GO_REF:0000117 NCBI chr17:14,750,246...14,754,417
Ensembl chr17:14,973,662...14,977,797
JBrowse link
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 4:100,119,540...100,225,575
Ensembl chr 4:110,692,601...110,798,619
JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr10:84,383,936...84,471,745
Ensembl chr10:87,890,631...87,977,839
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDK1 pyruvate dehydrogenase kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:59,841,840...59,958,504
Ensembl chr2B:177,297,840...177,341,113
JBrowse link
G PDK2 pyruvate dehydrogenase kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,185,463...44,202,221
Ensembl chr17:49,060,030...49,076,115
JBrowse link
G PDK3 pyruvate dehydrogenase kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:17,062,278...17,147,489
Ensembl chr  X:24,430,028...24,504,730
JBrowse link
G PDK4 pyruvate dehydrogenase kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:87,540,600...87,553,673
Ensembl chr 7:101,128,060...101,141,157
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNCA synuclein alpha acts_upstream_of_or_within ISO (MGI:3629421|PMID:16734431)
(MGI:3628986|PMID:16636270)
MGI PMID:16636270 PMID:16734431 MGI:3628986 MGI:3629421 NCBI chr 4:82,018,585...82,132,938
Ensembl chr 4:92,737,608...92,850,600
JBrowse link
ribonucleoside bisphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COASY Coenzyme A synthase involved_in IEA UniProt GO_REF:0000117 NCBI chr17:14,750,246...14,754,417
Ensembl chr17:14,973,662...14,977,797
JBrowse link
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 4:100,119,540...100,225,575
Ensembl chr 4:110,692,601...110,798,619
JBrowse link
G PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr10:84,383,936...84,471,745
Ensembl chr10:87,890,631...87,977,839
JBrowse link
succinyl-CoA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMUT methylmalonyl-CoA mutase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,007,500...49,040,470
Ensembl chr 6:50,269,644...50,302,593
JBrowse link
succinyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT19 nudix hydrolase 19 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr19:29,610,390...29,632,778 JBrowse link
G NUDT7 nudix hydrolase 7 involved_in ISO (MGI:6157214|PMID:29378847) UniProt PMID:29378847 MGI:6157214 NCBI chr16:58,312,917...58,333,256
Ensembl chr16:77,747,863...77,801,651
JBrowse link
succinyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT4 acyl-CoA thioesterase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:54,150,843...54,155,119
Ensembl chr14:73,008,909...73,012,561
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in ISO (PMID:10806400) UniProt PMID:10806400 NCBI chr14:55,433,358...55,455,876
Ensembl chr14:74,278,128...74,300,133
JBrowse link
G LOC100995634 succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr12:92,131,291...92,132,557 JBrowse link
G OGDH oxoglutarate dehydrogenase involved_in ISO
IEA
RGD
Ensembl
PMID:9712727 GO_REF:0000107 RGD:2306877 NCBI chr 7:45,321,559...45,422,515
Ensembl chr 7:45,409,148...45,491,636
JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta involved_in ISO
IEA
RGD
TreeGrafter
PMID:17403370 GO_REF:0000118 RGD:2306915 NCBI chr13:29,095,062...29,189,618
Ensembl chr13:47,797,472...47,856,138
JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO RGD PMID:7430155 PMID:17403370 RGD:2306879 RGD:2306915 NCBI chr2A:84,476,814...84,512,920
Ensembl chr2A:86,035,723...86,066,622
JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:7430155 PMID:17403370 GO_REF:0000002 GO_REF:0000118 RGD:2306879 RGD:2306915 NCBI chr 3:67,277,348...67,563,181
Ensembl chr 3:68,647,738...68,931,891
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr2B:16,792,401...16,947,766
Ensembl chr2B:146,975,995...147,132,634
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7236232 GO_REF:0000118 RGD:2303721 NCBI chr 4:148,269,097...148,285,533
Ensembl chr 4:160,085,645...160,102,266
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCD1 ATP binding cassette subfamily D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,275,165...143,295,283
Ensembl chr  X:153,162,412...153,182,424
JBrowse link
very long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSD17B4 hydroxysteroid 17-beta dehydrogenase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:114,842,892...114,928,559
Ensembl chr 5:120,628,605...120,713,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16490
    metabolic process 10280
      organic substance metabolic process 9835
        organophosphate metabolic process 951
          nucleoside phosphate metabolic process 544
            nucleoside bisphosphate metabolic process 112
              nucleoside bisphosphate biosynthetic process + 45
              nucleoside bisphosphate catabolic process + 9
              purine nucleoside bisphosphate metabolic process + 112
              ribonucleoside bisphosphate metabolic process + 112
Path 2
Term Annotations click to browse term
  biological_process 16490
    metabolic process 10280
      nitrogen compound metabolic process 8409
        cellular nitrogen compound metabolic process 5742
          nucleobase-containing compound metabolic process 5037
            nucleobase-containing small molecule metabolic process 606
              nucleoside phosphate metabolic process 544
                nucleoside bisphosphate metabolic process 112
                  nucleoside bisphosphate biosynthetic process + 45
                  nucleoside bisphosphate catabolic process + 9
                  purine nucleoside bisphosphate metabolic process + 112
                  ribonucleoside bisphosphate metabolic process + 112
paths to the root