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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-excision repair, DNA incision
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Accession:GO:0033683 term browser browse the term
Definition:A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound.
Synonyms:exact_synonym: DNA incision involved in nucleotide-excision repair;   nucleic acid cleavage involved in nucleotide-excision repair



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nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA
ISO
PMID:21873635
(PMID:8692841)
RGD PMID:8692841 PMID:21873635 RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO
IBA
(PMID:17466626), (PMID:8692841)
PMID:21873635
RGD PMID:8692841 PMID:17466626 PMID:21873635 RGD:13792537 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:10413517) RGD PMID:10413517 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603015), (PMID:20603016), (PMID:25430771) RGD PMID:20603015 PMID:20603016 PMID:25430771 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) RGD PMID:19506022 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA
ISO
PMID:21873635
(PMID:21148310)
RGD PMID:21148310 PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:7657672) RGD PMID:7657672 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:11790111) RGD PMID:11790111 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in IBA
ISO
PMID:21873635
(PMID:32522879), (PMID:32821917), (PMID:7657672), (PMID:8090225)
RGD PMID:7657672 PMID:8090225 PMID:32522879 PMID:32821917 PMID:21873635 RGD:13792537 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC117889.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO
IBA
(PMID:7657672)
PMID:21873635
RGD PMID:7657672 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO
IBA
(PMID:11790111), (PMID:14728600)
PMID:21873635
RGD PMID:11790111 PMID:14728600 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(MGI:1289919|PMID:9743625)
(PMID:8990169)
RGD PMID:8990169 PMID:9743625 PMID:21873635 MGI:1289919, RGD:13792537 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      primary metabolic process 10467
        nucleobase-containing compound metabolic process 5360
          nucleic acid metabolic process 4874
            nucleic acid phosphodiester bond hydrolysis 251
              nucleotide-excision repair, DNA incision 10
                nucleotide-excision repair, DNA incision, 3'-to lesion 3
                nucleotide-excision repair, DNA incision, 5'-to lesion 4
Path 2
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      organic substance metabolic process 11278
        organic cyclic compound metabolic process 5819
          nucleobase-containing compound metabolic process 5360
            nucleic acid metabolic process 4874
              DNA metabolic process 878
                DNA repair 485
                  nucleotide-excision repair 57
                    nucleotide-excision repair, DNA incision 10
                      nucleotide-excision repair, DNA incision, 3'-to lesion 3
                      nucleotide-excision repair, DNA incision, 5'-to lesion 4
paths to the root