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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatoid body
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Accession:GO:0033391 term browser browse the term
Definition:A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182).



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chromatoid body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 IDA MMO:0000663 RGD PMID:27029769 RGD:11529670 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5447260|PMID:22900038)
UniProt
RGD
PMID:22900038 GO_REF:0000024 MGI:5447260 NCBI chr 1:167,331,756...167,430,235
Ensembl chr 1:167,331,633...167,430,231
JBrowse link
G Clock clock circadian regulator located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5447260|PMID:22900038)
UniProt
Ensembl
RGD
PMID:22900038 GO_REF:0000024 GO_REF:0000107 MGI:5447260 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Ddx25 DEAD-box helicase 25 located_in ISS
ISO
GO_REF:0000024
(MGI:3040720|PMID:15096601), (MGI:6453518|PMID:32665638)
UniProt
RGD
PMID:15096601 PMID:32665638 GO_REF:0000024 MGI:3040720 MGI:6453518 NCBI chr 8:33,894,224...33,910,377
Ensembl chr 8:33,894,232...33,921,764
JBrowse link
G Ddx4 DEAD-box helicase 4 located_in IDA
ISO
(MGI:1858321|PMID:10781947), (MGI:5446593|PMID:22792342)
(PMID:10781947)
RGD PMID:10781947 PMID:22792342 PMID:24141902 MGI:1858321 MGI:5446593, RGD:10755411 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
JBrowse link
G Ddx6 DEAD-box helicase 6 IDA RGD PMID:24141902 RGD:10755411 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E located_in ISO (MGI:5446593|PMID:22792342) RGD PMID:22792342 MGI:5446593 NCBI chr 2:227,066,519...227,099,261
Ensembl chr 2:227,066,673...227,098,683
JBrowse link
G Mael maelstrom spermatogenic transposon silencer located_in ISO (MGI:3655410|PMID:16787967) RGD PMID:16787967 MGI:3655410 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IDA RGD PMID:21764106 RGD:9685331 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012
JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 part_of ISO (MGI:5525987|PMID:23401851) RGD PMID:23401851 MGI:5525987 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 located_in ISO (MGI:3640041|PMID:16787948), (MGI:3663970|PMID:16938833), (MGI:5049827|PMID:21539824) RGD PMID:16787948 PMID:16938833 PMID:21539824 MGI:3640041 MGI:3663970 MGI:5049827 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (MGI:3842880|PMID:19114715), (MGI:5049827|PMID:21539824) RGD PMID:19114715 PMID:21539824 MGI:3842880 MGI:5049827 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
JBrowse link
G Slc25a54 solute carrier family 25, member 54 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:196,711,573...196,758,196
Ensembl chr 2:196,711,637...196,756,827
JBrowse link
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase located_in ISO (MGI:6453518|PMID:32665638) RGD PMID:32665638 MGI:6453518 NCBI chr 1:172,441,892...172,543,667
Ensembl chr 1:172,444,936...172,543,698
JBrowse link
G Tdrd1 tudor domain containing 1 located_in ISO (MGI:3695528|PMID:17141210) RGD PMID:17141210 MGI:3695528 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd5 tudor domain containing 5 located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:4946318|PMID:21383078)
Ensembl
UniProt
RGD
PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 located_in ISO (MGI:3847167|PMID:19345099) RGD PMID:19345099 MGI:3847167 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 located_in ISO (MGI:3695528|PMID:17141210) RGD PMID:17141210 MGI:3695528 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21257
    cellular anatomical entity 21099
      cytoplasm 12272
        cytoplasmic ribonucleoprotein granule 261
          chromatoid body 18
Path 2
Term Annotations click to browse term
  cellular_component 21257
    cellular anatomical entity 21099
      organelle 14212
        non-membrane-bounded organelle 5315
          intracellular non-membrane-bounded organelle 5313
            ribonucleoprotein granule 280
              cytoplasmic ribonucleoprotein granule 261
                chromatoid body 18
paths to the root