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ONTOLOGY REPORT - ANNOTATIONS

Term:geranylgeranyl diphosphate metabolic process
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Accession:GO:0033385 term browser browse the term
Definition:The chemical reactions and pathways involving geranylgeranyl diphosphate, a polyprenol compound involved in the biosynthesis of a variety of terpenoids including chlorophylls, carotenoids, tocopherols, plastoquinones, and the plant hormones gibberellins.
Synonyms:exact_synonym: geranylgeranyl diphosphate metabolism;   geranylgeranyldiphosphate metabolic process


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geranylgeranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr 1:50,100,840...50,118,886
Ensembl chr 1:50,100,817...50,135,095 		JBrowse link
G Fdps farnesyl diphosphate synthase involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr 2:176,795,192...176,804,816
Ensembl chr 2:176,795,192...176,807,136 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA
ISO 		GO_REF:0000041
(PMID:10101267) 		UniProt
RGD		 PMID:10101267 GO_REF:0000041 NCBI chr17:55,958,750...55,982,762
Ensembl chr17:55,958,755...55,971,709 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr 2:29,732,163...29,754,276
Ensembl chr 2:29,720,553...29,754,533 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr 2:53,379,457...53,399,807
Ensembl chr 2:53,382,643...53,399,802 		JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr17:66,539,761...66,547,524
Ensembl chr17:66,539,763...66,547,524 		JBrowse link
G Mvd mevalonate diphosphate decarboxylase involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr19:67,404,911...67,414,974
Ensembl chr19:67,404,911...67,422,366 		JBrowse link
G Mvk mevalonate kinase involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr12:47,802,002...47,819,503
Ensembl chr12:47,802,002...47,819,503 		JBrowse link
G Pmvk phosphomevalonate kinase involved_in ISO (PMID:3189812) RGD PMID:3189812 NCBI chr 2:177,174,344...177,184,076
Ensembl chr 2:177,174,335...177,184,080 		JBrowse link
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS 		(PMID:20110354)
GO_REF:0000024 		RGD
UniProt		 PMID:20110354 GO_REF:0000024 NCBI chr 1:236,092,642...236,095,494
Ensembl chr 1:236,090,364...236,101,554 		JBrowse link
G Spata6l spermatogenesis associated 6-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:236,042,960...236,096,530
Ensembl chr 1:236,033,147...236,096,730 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        primary metabolic process 10162
          lipid metabolic process 1489
            phospholipid metabolic process 379
              geranylgeranyl diphosphate metabolic process 11
                geranylgeranyl diphosphate biosynthetic process 9
                geranylgeranyl diphosphate catabolic process 2
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18484
      metabolic process 11533
        primary metabolic process 10162
          lipid metabolic process 1489
            isoprenoid metabolic process 129
              terpenoid metabolic process 113
                geranylgeranyl diphosphate metabolic process 11
                  geranylgeranyl diphosphate biosynthetic process 9
                  geranylgeranyl diphosphate catabolic process 2
paths to the root