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ONTOLOGY REPORT - ANNOTATIONS

Term:response to vitamin D
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Accession:GO:0033280 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus.
Synonyms:exact_synonym: response to calciferol
 narrow_synonym: response to cholecalciferol;   response to ergocalciferol


show annotations for term's descendants           Sort by:
response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 ISO RGD PMID:20013813 RGD:2315563 NCBI chr 7:79,497,536...79,706,277
Ensembl chr 7:93,147,950...93,243,238 		JBrowse link
G ALPL alkaline phosphatase, biomineralization associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,702,509...20,772,301
Ensembl chr 1:21,667,732...21,736,688 		JBrowse link
G BGLAP bone gamma-carboxyglutamate protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:131,583,789...131,586,459
Ensembl chr 1:135,413,871...135,416,432 		JBrowse link
G BMP7 bone morphogenetic protein 7 ISO RGD PMID:17554252 RGD:2289035 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G CD4 CD4 molecule ISO RGD PMID:8759780 RGD:10058969 NCBI chr12:6,920,587...6,951,814
Ensembl chr12:6,834,011...6,864,204 		JBrowse link
G CDKN2D cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:16322758) BHF-UCL PMID:16322758 NCBI chr19:10,118,302...10,120,957 JBrowse link
G CRYM crystallin mu ISO RGD PMID:2809492 RGD:2303730 NCBI chr16:17,127,351...17,147,210
Ensembl chr16:21,290,477...21,310,446 		JBrowse link
G CXCL10 C-X-C motif chemokine ligand 10 ISO RGD PMID:15637289 RGD:2311387 NCBI chr 4:48,182,355...48,184,733
Ensembl chr 4:54,020,204...54,022,606 		JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,500,103...50,520,487
Ensembl chr20:51,721,685...51,742,716 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:3000565 GO_REF:0000107 RGD:2307325 NCBI chr12:31,158,814...31,164,462
Ensembl chr12:31,419,773...31,424,822 		JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 ISO RGD PMID:27209698 RGD:405157752 NCBI chr17:17,560,337...17,600,808
Ensembl chr17:17,777,434...17,805,862 		JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 ISO RGD PMID:27209698 RGD:405157752 NCBI chr2B:98,625,630...99,795,371
Ensembl chr2B:217,069,644...218,272,006 		JBrowse link
G GGCX gamma-glutamyl carboxylase ISO RGD PMID:3840747 RGD:11040515 NCBI chr2A:85,599,227...85,612,274
Ensembl chr2A:87,152,111...87,164,567 		JBrowse link
G IL1B interleukin 1 beta ISO RGD PMID:17621647 RGD:1626651 NCBI chr2A:89,216,313...89,223,358
Ensembl chr2A:113,846,306...113,853,424 		JBrowse link
G INSR insulin receptor ISO 1,25-dihydroxyvitamin D3, in diabetic rats RGD PMID:18638371 RGD:2307025 NCBI chr19:6,393,407...6,578,234
Ensembl chr19:7,260,246...7,414,889 		JBrowse link
G KL klotho ISO RGD PMID:20631679 RGD:10403078 NCBI chr13:14,272,463...14,321,122
Ensembl chr13:32,702,336...32,751,458 		JBrowse link
G LRP2 LDL receptor related protein 2 ISO RGD PMID:9541123 RGD:1641848 NCBI chr2B:56,407,871...56,640,471
Ensembl chr2B:173,873,767...174,103,697 		JBrowse link
G NRG1 neuregulin 1 ISO RGD PMID:27209698 RGD:405157752 NCBI chr 8:30,954,852...32,084,411
Ensembl chr 8:29,050,222...29,263,977 		JBrowse link
G PHEX phosphate regulating endopeptidase X-linked ISO RGD PMID:14693675 RGD:11556273 NCBI chr  X:14,663,847...14,859,294
Ensembl chr  X:22,017,681...22,232,501 		JBrowse link
G PLA2G4A phospholipase A2 group IVA ISO RGD PMID:15225789 RGD:1642467 NCBI chr 1:162,362,600...162,521,974
Ensembl chr 1:166,512,870...166,672,101 		JBrowse link
G PRKCB protein kinase C beta ISO RGD PMID:10206343 RGD:1625620 NCBI chr16:13,888,936...14,268,759
Ensembl chr16:24,091,289...24,466,203 		JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:18348265 RGD:2300284 NCBI chr 1:162,205,534...162,214,130
Ensembl chr 1:166,355,845...166,364,519 		JBrowse link
G PTH parathyroid hormone ISO RGD PMID:22926202 RGD:7242796 NCBI chr11:13,653,777...13,657,901
Ensembl chr11:13,347,838...13,351,802 		JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:12048211 RGD:625496 NCBI chr 9:105,424,046...105,539,241
Ensembl chr 9:134,082,865...134,144,704 		JBrowse link
G SERPINH1 serpin family H member 1 ISO RGD PMID:32585450 RGD:41410783 NCBI chr11:70,621,893...70,632,570 JBrowse link
G SLC8A2 solute carrier family 8 member A2 ISO RGD PMID:20113508 RGD:2316972 NCBI chr19:44,420,146...44,464,242
Ensembl chr19:53,077,857...53,113,830 		JBrowse link
G SPP1 secreted phosphoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,263,711...80,271,466
Ensembl chr 4:90,988,200...90,995,935 		JBrowse link
G STC1 stanniocalcin 1 ISO RGD PMID:11702003 RGD:2324701 NCBI chr 8:23,089,339...23,102,245
Ensembl chr 8:20,023,469...20,036,321 		JBrowse link
G STC2 stanniocalcin 2 ISO RGD PMID:10508929 RGD:634221 NCBI chr 5:168,668,851...168,681,274
Ensembl chr 5:175,575,419...175,587,832 		JBrowse link
G TGFB1 transforming growth factor beta 1 ISO RGD PMID:11956143 PMID:24613393 RGD:11073674 RGD:2302111 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:11956143 RGD:2302111 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TPCN2 two pore segment channel 2 ISO RGD PMID:20197420 RGD:9585651 NCBI chr11:64,139,512...64,227,913
Ensembl chr11:67,438,635...67,478,106 		JBrowse link
G TRIM25 tripartite motif containing 25 ISO RGD PMID:10425199 RGD:1300518 NCBI chr17:50,965,592...50,991,630
Ensembl chr17:55,826,458...55,852,422 		JBrowse link
G TYR tyrosinase ISO RGD PMID:6175546 RGD:8694330 NCBI chr11:84,188,557...84,306,686
Ensembl chr11:87,769,606...87,888,138 		JBrowse link
G VIM vimentin ISO RGD PMID:18687349 RGD:6480443 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642 		JBrowse link
cellular response to vitamin D term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:11108265 RGD:9681746 NCBI chr21:13,270,668...13,279,217
Ensembl chr21:26,656,370...26,665,485 		JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:11277270 RGD:2317730 NCBI chr12:87,107,900...87,229,514
Ensembl chr12:90,427,560...90,495,320 		JBrowse link
G BGLAP bone gamma-carboxyglutamate protein ISO RGD PMID:3257212 PMID:6607920 RGD:2316174 RGD:6483560 NCBI chr 1:131,583,789...131,586,459
Ensembl chr 1:135,413,871...135,416,432 		JBrowse link
G CASR calcium sensing receptor ISO 1,25-dihydroxycholecalciferol (calcitriol) RGD PMID:21940515 RGD:7205697 NCBI chr 3:119,278,071...119,383,901
Ensembl chr 3:126,252,765...126,285,268 		JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 ISO RGD PMID:28104492 RGD:151665513 NCBI chr20:50,500,103...50,520,487
Ensembl chr20:51,721,685...51,742,716 		JBrowse link
G FES FES proto-oncogene, tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,576,936...69,588,834
Ensembl chr15:88,774,965...88,786,965 		JBrowse link
G FGF23 fibroblast growth factor 23 ISO RGD PMID:23263654 RGD:10044209 NCBI chr12:4,479,116...4,488,797
Ensembl chr12:4,400,802...4,412,000 		JBrowse link
G FZD1 frizzled class receptor 1 ISO RGD PMID:1334084 RGD:61590 NCBI chr 7:83,269,906...83,277,608 JBrowse link
G FZD2 frizzled class receptor 2 ISO RGD PMID:1334084 RGD:61590 NCBI chr17:12,839,362...12,843,803 JBrowse link
G GDAP1 ganglioside induced differentiation associated protein 1 ISO RGD PMID:25449168 RGD:12738378 NCBI chr 8:70,854,665...70,900,532
Ensembl chr 8:72,528,869...72,545,346 		JBrowse link
G IL15 interleukin 15 ISO RGD PMID:15637289 RGD:2311387 NCBI chr 4:133,693,995...134,115,470
Ensembl chr 4:145,402,111...145,416,622 		JBrowse link
G ITGB1 integrin subunit beta 1 ISO calcitriol RGD PMID:20304064 RGD:2325261 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031 		JBrowse link
G KDM6A lysine demethylase 6A ISO RGD PMID:31907922 RGD:151665135 NCBI chr  X:37,313,000...37,548,630
Ensembl chr  X:45,127,382...45,362,029 		JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO RGD PMID:10025676 RGD:10412059 NCBI chr2A:32,956,937...33,409,286
Ensembl chr2A:33,667,191...34,120,602 		JBrowse link
G MMP1 matrix metallopeptidase 1 ISO RGD PMID:22064970 RGD:7207281 NCBI chr11:97,730,545...97,739,190
Ensembl chr11:101,221,393...101,230,104 		JBrowse link
G NOS2 nitric oxide synthase 2 ISO RGD PMID:18534083 RGD:4891908 NCBI chr17:28,984,295...29,021,516
Ensembl chr17:29,471,510...29,617,093 		JBrowse link
G PDIA3 protein disulfide isomerase family A member 3 ISO RGD PMID:15862831 RGD:9999173 NCBI chr15:22,706,520...22,731,672
Ensembl chr15:40,794,144...40,821,763 		JBrowse link
G PENK proenkephalin ISO RGD PMID:8584038 RGD:10003035 NCBI chr 8:52,864,388...52,870,144
Ensembl chr 8:50,234,170...50,239,949 		JBrowse link
G PHEX phosphate regulating endopeptidase X-linked ISO RGD PMID:15337762 RGD:11556251 NCBI chr  X:14,663,847...14,859,294
Ensembl chr  X:22,017,681...22,232,501 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:21153232 RGD:9831436 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:16149051) UniProt PMID:16149051 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SULT2A1 sulfotransferase family 2A member 1 ISO RGD PMID:14978251 RGD:2317006 NCBI chr19:44,864,747...44,880,688
Ensembl chr19:53,517,248...53,532,573 		JBrowse link
G TNC tenascin C ISO RGD PMID:10502285 RGD:4889620 NCBI chr 9:86,125,672...86,222,804
Ensembl chr 9:114,486,778...114,584,299 		JBrowse link
G TREM1 triggering receptor expressed on myeloid cells 1 ISO RGD PMID:29331667 RGD:127284861 NCBI chr 6:40,861,283...40,874,446
Ensembl chr 6:42,163,337...42,183,091 		JBrowse link
G VDR vitamin D receptor ISO RGD PMID:9753201 RGD:8158092 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192 		JBrowse link
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KANK2 KN motif and ankyrin repeat domains 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:10,713,582...10,746,371
Ensembl chr19:11,426,149...11,457,359 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:45,341,857...45,345,544
Ensembl chr 8:42,723,971...42,730,904 		JBrowse link
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,158,814...31,164,462
Ensembl chr12:31,419,773...31,424,822 		JBrowse link
G MN1 MN1 proto-oncogene, transcriptional regulator involved_in ISO (PMID:15890672) UniProt PMID:15890672 NCBI chr22:8,799,832...8,854,695 JBrowse link
G RXRA retinoid X receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:105,424,046...105,539,241
Ensembl chr 9:134,082,865...134,144,704 		JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:11514567), (PMID:9632709) UniProt PMID:9632709 PMID:11514567 NCBI chr14:58,271,830...58,315,773
Ensembl chr14:77,472,387...77,517,315 		JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192 		JBrowse link
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MED1 mediator complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16324150) Ensembl
MGI		 PMID:16324150 GO_REF:0000107 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118 		JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:14985122) UniProt PMID:14985122 NCBI chr14:58,271,830...58,315,773
Ensembl chr14:77,472,387...77,517,315 		JBrowse link
G TRIM24 tripartite motif containing 24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287084) Ensembl
MGI		 PMID:18287084 GO_REF:0000107 NCBI chr 7:130,420,334...130,547,489
Ensembl chr 7:142,909,009...143,036,526 		JBrowse link
vitamin D receptor signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIM1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22720752) CACAO PMID:22720752 NCBI chr 6:36,730,669...36,735,954 JBrowse link
G VDR vitamin D receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    response to stimulus 8500
      response to chemical 4402
        response to oxygen-containing compound 2192
          response to vitamin D 64
            cellular response to vitamin D + 34
Path 2
Term Annotations click to browse term
  biological_process 16440
    response to stimulus 8500
      response to chemical 4402
        response to organic substance 3231
          response to organic cyclic compound 1393
            response to vitamin D 64
              cellular response to vitamin D + 34
paths to the root