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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear DNA replication
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Accession:GO:0033260 term browser browse the term
Definition:The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle.
Synonyms:exact_synonym: DNA replication involved in S phase;   nuclear cell cycle DNA replication
 related_synonym: DNA replication during S phase
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


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nuclear DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family AAA domain containing 5 involved_in ISO (MGI:5763555|PMID:25404367) MGI PMID:25404367 MGI:5763555 NCBI chrNW_004955481:6,986,128...7,031,113
Ensembl chrNW_004955481:6,986,502...7,030,742
JBrowse link
G Rpa4 replication protein A4 NOT|involved_in ISO (PMID:19116208), (PMID:19942684) UniProt PMID:19116208 PMID:19942684 NCBI chrNW_004955503:2,514,460...2,516,973 JBrowse link
G Znf830 zinc finger protein 830 acts_upstream_of_or_within ISO (MGI:4950701|PMID:21191184) MGI PMID:21191184 MGI:4950701 NCBI chrNW_004955481:9,661,791...9,663,326
Ensembl chrNW_004955481:9,661,830...9,662,918
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:11125146) CAFA PMID:11125146 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102
JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in ISO (PMID:11125146) CAFA PMID:11125146 NCBI chrNW_004955483:2,283,518...2,344,982
Ensembl chrNW_004955483:2,282,485...2,293,924
JBrowse link
DNA synthesis involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tk1 thymidine kinase 1 involved_in ISO (PMID:14697231) UniProt PMID:14697231 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713
JBrowse link
mitotic DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Recql5 RecQ like helicase 5 involved_in ISO (PMID:28575661) UniProt PMID:28575661 NCBI chrNW_004955506:6,574,802...6,612,763
Ensembl chrNW_004955506:6,575,408...6,612,186
JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated involved_in ISO (PMID:21076401) BHF-UCL PMID:21076401 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO (MGI:5499273|PMID:23604072) BHF-UCL PMID:23604072 MGI:5499273 NCBI chrNW_004955425:20,664,412...20,705,070
Ensembl chrNW_004955425:20,661,727...20,702,754
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in ISO (MGI:5522574|PMID:24115439) BHF-UCL PMID:24115439 MGI:5522574 NCBI chrNW_004955528:531,680...578,003
Ensembl chrNW_004955528:532,385...572,398
JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:79015|PMID:2161540) MGI PMID:2161540 MGI:79015 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111
JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler involved_in ISO (MGI:5568153|PMID:24651726) UniProt PMID:24651726 MGI:5568153 NCBI chrNW_004955557:947,368...1,252,701
Ensembl chrNW_004955557:947,167...1,252,724
JBrowse link
G Cdc7 cell division cycle 7 involved_in ISO (PMID:15668232) UniProt PMID:15668232 NCBI chrNW_004955423:2,902,352...2,923,743
Ensembl chrNW_004955423:2,902,048...2,924,573
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20237820) UniProt PMID:20237820 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812
JBrowse link
G Wiz WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chrNW_004955495:7,810,145...7,834,908
Ensembl chrNW_004955495:7,811,804...7,833,918
JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO (MGI:3583382|PMID:15980864) MGI PMID:15980864 MGI:3583382 NCBI chrNW_004955537:82,724...134,609
Ensembl chrNW_004955537:81,920...134,609
JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within ISO (MGI:2159541|PMID:11850834) MGI PMID:11850834 MGI:2159541 NCBI chrNW_004955541:2,683,030...2,687,883
Ensembl chrNW_004955541:2,683,408...2,687,102
JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in ISO (MGI:5619482|PMID:16980615) CACAO PMID:16980615 MGI:5619482 NCBI chrNW_004955404:34,739,780...35,118,037
Ensembl chrNW_004955404:34,740,026...35,137,490
JBrowse link
G Ilkap ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chrNW_004955542:2,391,432...2,407,559
Ensembl chrNW_004955542:2,391,431...2,408,732
JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in ISO (PMID:19734146) UniProt PMID:19734146 NCBI chrNW_004955403:50,507,971...50,558,881
Ensembl chrNW_004955403:50,507,116...50,558,826
JBrowse link
telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:21829167) BHF-UCL PMID:21829167 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12307
    cellular process 11488
      cell cycle process 1053
        cell cycle DNA replication 26
          nuclear DNA replication 21
            DNA replication preinitiation complex assembly + 2
            DNA strand elongation involved in nuclear cell cycle DNA replication + 0
            mitotic DNA replication + 5
            negative regulation of nuclear cell cycle DNA replication + 0
            nuclear DNA replication DNA duplex unwinding + 0
            nuclear DNA replication DNA ligation + 0
            nuclear DNA replication termination + 0
            nuclear cell cycle DNA replication initiation + 0
            positive regulation of nuclear cell cycle DNA replication + 5
            pre-replicative complex assembly involved in nuclear cell cycle DNA replication + 0
            premeiotic DNA replication + 0
            regulation of nuclear cell cycle DNA replication + 10
            synthesis of RNA primer involved in nuclear cell cycle DNA replication + 0
            telomere maintenance via semi-conservative replication + 4
Path 2
Term Annotations click to browse term
  biological_process 12307
    metabolic process 7442
      cellular metabolic process 6653
        cellular aromatic compound metabolic process 3928
          nucleobase-containing compound metabolic process 3736
            nucleic acid metabolic process 3370
              DNA metabolic process 759
                DNA replication 223
                  DNA-templated DNA replication 130
                    cell cycle DNA replication 26
                      nuclear DNA replication 21
                        DNA replication preinitiation complex assembly + 2
                        DNA strand elongation involved in nuclear cell cycle DNA replication + 0
                        mitotic DNA replication + 5
                        negative regulation of nuclear cell cycle DNA replication + 0
                        nuclear DNA replication DNA duplex unwinding + 0
                        nuclear DNA replication DNA ligation + 0
                        nuclear DNA replication termination + 0
                        nuclear cell cycle DNA replication initiation + 0
                        positive regulation of nuclear cell cycle DNA replication + 5
                        pre-replicative complex assembly involved in nuclear cell cycle DNA replication + 0
                        premeiotic DNA replication + 0
                        regulation of nuclear cell cycle DNA replication + 10
                        synthesis of RNA primer involved in nuclear cell cycle DNA replication + 0
                        telomere maintenance via semi-conservative replication + 4
paths to the root