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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular pigmentation
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Accession:GO:0033059 term browser browse the term
Definition:The deposition or aggregation of coloring matter in a cell.


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cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in IEA
ISO
GO_REF:0000107
(PMID:9620771)
Ensembl
RGD
PMID:9620771 GO_REF:0000107 NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:5607516 NCBI chr 1:91,857,048...91,958,763
Ensembl chr 1:91,857,057...91,958,763
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:41,805,252...41,860,076 JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:19,288,354...19,303,818
Ensembl chr16:19,288,355...19,303,824
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cd63 Cd63 molecule involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21962903)
Ensembl
UniProt
RGD
PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Shroom2 shroom family member 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:23,478,869...23,649,424
Ensembl chr  X:23,478,871...23,649,466
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:29940187)
GO_REF:0000024
RGD
UniProt
PMID:29940187 GO_REF:0000024 NCBI chr 9:82,373,950...82,382,228
Ensembl chr 9:82,373,946...82,382,272
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in ISO
IBA
(PMID:23084991)
PMID:21873635
RGD PMID:23084991, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
PMID:21873635
RGD PMID:23084991, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr12:50,285,239...50,315,893
Ensembl chr12:50,285,278...50,314,406
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
G Trappc6a trafficking protein particle complex subunit 6A involved_in
acts_upstream_of_or_within
ISO
IBA
MGI:3688725 (MGI:3688835|PMID:16697553)
PMID:21873635
RGD PMID:16697553, PMID:21873635, PMID:21873635 MGI:3688835, RGD:13792537, RGD:13792537 NCBI chr 1:80,417,514...80,424,429
Ensembl chr 1:80,417,310...80,424,445
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2177987|PMID:11887186), (MGI:3028456|PMID:14730011), (MGI:3614727|PMID:11886590) RGD PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin involved_in ISO (MGI:5447858|PMID:22940130) RGD PMID:22940130 MGI:5447858 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:1930900|PMID:11266470), (MGI:3028456|PMID:14730011), (MGI:85369|PMID:8962090) RGD PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO (PMID:15357836)
MGI:1856656 (MGI:1930900|PMID:11266470)
RGD PMID:11266470 PMID:15357836 MGI:1930900 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:19,288,354...19,303,818
Ensembl chr16:19,288,355...19,303,824
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO (PMID:11452004), (PMID:19841138)
(MGI:1330543|PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 MGI:1330543 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1855937 (MGI:1202196|PMID:9548375)
PMID:21873635
RGD PMID:9548375, PMID:21873635, PMID:21873635 MGI:1202196, RGD:13792537, RGD:13792537 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3522060|PMID:15265785) RGD PMID:15265785 MGI:3522060 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (MGI:1354542|PMID:11110696) RGD PMID:11110696 MGI:1354542 NCBI chr14:79,013,808...79,015,108
Ensembl chr14:79,013,807...79,015,112
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO
IBA
(PMID:19717472)
PMID:21873635
RGD PMID:19717472, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:18,151,582...18,335,027
Ensembl chr17:18,151,982...18,335,019
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (MGI:3618562|PMID:16518687), (MGI:53824|PMID:4634048) RGD PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chr17:90,323,055...90,522,091 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:29584722)
(MGI:6152906|PMID:29584722)
RGD PMID:29584722 MGI:6152906 NCBI chr 9:71,911,744...72,005,816
Ensembl chr 9:71,915,421...72,005,838
JBrowse link
G Pmel premelanosome protein involved_in ISO
IBA
(PMID:11694580)
PMID:21873635
RGD PMID:11694580, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:48,644,575...48,650,229
Ensembl chr13:48,644,604...48,650,220
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3710716|PMID:16987870)
UniProt
RGD
PMID:16987870 GO_REF:0000024 MGI:3710716 NCBI chr  X:23,478,869...23,649,424
Ensembl chr  X:23,478,871...23,649,466
JBrowse link
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1855960 (MGI:1202196|PMID:9548375)
PMID:21873635
RGD PMID:9548375, PMID:21873635, PMID:21873635 MGI:1202196, RGD:13792537, RGD:13792537 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1855937 (MGI:1202196|PMID:9548375) RGD PMID:9548375 MGI:1202196 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Dctn1 dynactin subunit 1 acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Dctn2 dynactin subunit 2 acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 7:70,555,953...70,571,433
Ensembl chr 7:70,556,019...70,572,614
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5492030|PMID:22275436)
PMID:21873635
RGD PMID:22275436, PMID:21873635, PMID:21873635 MGI:5492030, RGD:13792537, RGD:13792537 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1858077 (MGI:1202196|PMID:9548375), (MGI:3653524|PMID:11266473), (MGI:5569175|PMID:24721909), (MGI:87417|PMID:9133672) RGD PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5487521|PMID:21291502)
PMID:21873635
UniProt
RGD
PMID:21291502, PMID:21873635, PMID:21873635 GO_REF:0000024 MGI:5487521, RGD:13792537, RGD:13792537 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:5487521|PMID:21291502)
UniProt
RGD
PMID:21291502 GO_REF:0000024 MGI:5487521 NCBI chr 7:18,598,991...18,612,132
Ensembl chr 7:18,598,880...18,612,147
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) RGD PMID:22854043 MGI:5526918 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856656 (MGI:3653524|PMID:11266473)
PMID:21873635
RGD PMID:11266473, PMID:21873635, PMID:21873635 MGI:3653524, RGD:13792537, RGD:13792537 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rab27b RAB27B, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561) RGD PMID:14609561 PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) RGD PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
MGI:2158305 (MGI:81816|PMID:8758925)
Ensembl
RGD
PMID:8758925 GO_REF:0000107 MGI:81816 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (MGI:54133|PMID:1278263) RGD PMID:1278263 MGI:54133 NCBI chr17:90,323,055...90,522,091 JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:1267003|PMID:9620764), (MGI:3512820|PMID:15572405) RGD PMID:9620764 PMID:15572405 MGI:1267003 MGI:3512820 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3512820|PMID:15572405) RGD PMID:15572405 MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    pigmentation 100
      cellular pigmentation 44
        cellular pigment accumulation + 10
        pigment granule localization + 22
        pigment granule organization + 21
paths to the root